Wall clock time and date at job start Wed Apr 1 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47586 * 2 1 4 4 C 1.37589 * 119.80080 * 269.98032 * 3 2 1 5 5 N 1.37489 * 120.39358 * 0.02562 * 4 3 2 6 6 C 1.37989 * 119.21336 * 179.97438 * 4 3 2 7 7 N 1.41121 * 120.56752 * 180.02562 * 6 4 3 8 8 C 1.38632 * 119.99719 * 180.32878 * 7 6 4 9 9 C 1.39866 * 119.59235 * 111.50112 * 8 7 6 10 10 C 1.38576 * 119.48907 * 179.97438 * 9 8 7 11 11 C 1.38407 * 118.69264 * 0.02562 * 10 9 8 12 12 C 1.40588 * 119.16357 * 359.97438 * 11 10 9 13 13 C 1.41278 * 119.78689 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99635 * 0.02562 * 13 12 11 15 15 C 1.39968 * 120.00503 * 180.02562 * 13 12 11 16 16 N 1.30774 * 119.99952 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00032 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47252 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47374 * 119.99927 * 17 15 13 20 20 H 1.48504 * 109.46942 * 239.99404 * 17 15 13 21 21 N 1.32058 * 119.58801 * 291.23333 * 8 7 6 22 22 C 1.40760 * 118.86202 * 359.73253 * 6 4 3 23 23 O 1.21949 * 120.22699 * 180.29248 * 22 6 4 24 24 N 1.34746 * 119.55623 * 0.53766 * 22 6 4 25 25 C 1.46506 * 119.62003 * 179.75845 * 24 22 6 26 26 C 1.52999 * 109.46972 * 269.72166 * 25 24 22 27 27 C 1.34477 * 120.75874 * 359.47243 * 24 22 6 28 28 O 1.21611 * 119.39425 * 180.25796 * 27 24 22 29 29 H 1.08999 * 109.46922 * 59.99952 * 1 2 3 30 30 H 1.09002 * 109.47428 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47269 * 300.00078 * 1 2 3 32 32 H 1.09006 * 109.47205 * 239.99860 * 2 1 3 33 33 H 1.08999 * 109.46922 * 120.00048 * 2 1 3 34 34 H 0.97001 * 119.99865 * 359.97438 * 5 4 3 35 35 H 0.97001 * 120.00208 * 180.02562 * 5 4 3 36 36 H 0.96998 * 120.00119 * 0.31885 * 7 6 4 37 37 H 1.07995 * 120.25646 * 359.97438 * 9 8 7 38 38 H 1.07993 * 120.65426 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.42046 * 179.97438 * 11 10 9 40 40 H 0.97004 * 119.99903 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47027 * 149.72085 * 25 24 22 42 42 H 1.09003 * 109.47190 * 29.72127 * 25 24 22 43 43 H 1.08992 * 109.47124 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46894 * 59.99974 * 26 25 24 45 45 H 1.08994 * 109.47098 * 300.00292 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2468 2.0257 -1.1939 5 7 2.0188 1.3815 -2.3870 6 6 2.7063 3.3268 -1.1798 7 7 2.9496 4.0151 -2.3875 8 6 3.4177 5.3197 -2.3595 9 6 4.7179 5.5965 -2.7944 10 6 5.1834 6.9014 -2.7660 11 6 4.3409 7.8976 -2.3040 12 6 3.0445 7.5566 -1.8803 13 6 2.1733 8.5630 -1.4069 14 1 2.5039 9.5905 -1.3717 15 6 0.8819 8.2284 -0.9834 16 7 0.4814 6.9843 -1.0264 17 14 -0.2701 9.5594 -0.3581 18 1 0.4179 10.8743 -0.4103 19 1 -1.4858 9.6022 -1.2098 20 1 -0.6582 9.2596 1.0437 21 7 2.6286 6.2865 -1.9274 22 6 2.9223 3.9576 0.0598 23 8 3.3230 5.1087 0.1014 24 7 2.6881 3.2795 1.2005 25 6 2.9175 3.9330 2.4915 26 6 4.3577 3.6806 2.9421 27 6 2.2408 2.0118 1.1674 28 8 2.0332 1.4247 2.2120 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6954 0.4670 -2.3902 35 1 2.1821 1.8411 -3.2254 36 1 2.7894 3.5754 -3.2371 37 1 5.3541 4.7995 -3.1497 38 1 6.1839 7.1365 -3.0978 39 1 4.6751 8.9240 -2.2695 40 1 -0.4138 6.7525 -0.7332 41 1 2.2285 3.5266 3.2319 42 1 2.7511 5.0055 2.3905 43 1 4.5285 4.1671 3.9023 44 1 5.0465 4.0870 2.2016 45 1 4.5241 2.6082 3.0430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164470822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:54 Heat of formation + Delta-G solvation = 43.531749 kcal Electronic energy + Delta-G solvation = -32029.744117 eV Core-core repulsion = 27856.556150 eV Total energy + Delta-G solvation = -4173.187967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.91916 -38.85086 -38.27814 -37.57525 -35.02260 -34.86665 -33.56082 -32.99134 -32.29419 -30.20078 -30.05402 -29.28393 -27.27249 -25.23523 -24.35440 -23.95844 -22.38508 -21.81564 -21.15438 -20.89978 -19.41878 -17.70252 -17.40324 -17.01922 -16.68141 -16.28396 -15.82723 -15.53564 -15.16439 -14.61345 -14.57642 -14.33821 -14.11727 -14.01352 -13.85056 -13.49916 -13.27117 -13.23276 -12.72600 -12.50102 -12.28740 -12.09605 -11.99474 -11.84269 -11.70482 -11.36683 -11.11470 -10.92444 -10.81695 -10.59520 -10.50932 -10.44951 -9.94413 -9.71352 -9.60478 -9.39827 -9.16288 -9.13445 -7.87138 -7.41315 -7.32867 -6.30710 -6.00511 -4.33052 1.83521 2.13496 2.52780 2.87234 3.16435 3.18904 3.20780 3.31899 3.34879 3.69179 4.05970 4.10167 4.21267 4.67812 4.90292 4.90852 5.03814 5.15284 5.30723 5.44704 5.47111 5.53418 5.58565 5.70277 5.87989 5.97199 6.03809 6.11291 6.13293 6.24460 6.28062 6.37340 6.48775 6.63317 6.89436 6.94421 7.13724 7.23791 7.34065 7.46466 7.73633 7.83311 7.90474 7.97692 8.07432 8.20270 8.40770 8.58787 8.72917 8.89370 9.18069 10.32119 10.49382 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.004517 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.567196 B = 6197.680582 C = 6704.523202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.531 5.531 4 C 0.334 3.666 5 N -0.853 5.853 6 C -0.013 4.013 7 N -0.662 5.662 8 C 0.389 3.611 9 C -0.314 4.314 10 C -0.053 4.053 11 C -0.285 4.285 12 C 0.278 3.722 13 C -0.434 4.434 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.708 5.708 17 Si 0.899 3.101 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.275 1.275 21 N -0.458 5.458 22 C 0.545 3.455 23 O -0.454 6.454 24 N -0.552 5.552 25 C 0.113 3.887 26 C -0.161 4.161 27 C 0.702 3.298 28 O -0.564 6.564 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.397 0.603 35 H 0.412 0.588 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.265 0.735 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -15.053 0.453 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 N -0.260 5.260 4 C 0.124 3.876 5 N -0.404 5.404 6 C -0.125 4.125 7 N -0.298 5.298 8 C 0.152 3.848 9 C -0.340 4.340 10 C -0.077 4.077 11 C -0.308 4.308 12 C 0.152 3.848 13 C -0.466 4.466 14 H 0.098 0.902 15 C -0.152 4.152 16 N -0.330 5.330 17 Si 0.724 3.276 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.201 1.201 21 N -0.173 5.173 22 C 0.339 3.661 23 O -0.323 6.323 24 N -0.298 5.298 25 C -0.008 4.008 26 C -0.219 4.219 27 C 0.405 3.595 28 O -0.440 6.440 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.227 0.773 35 H 0.244 0.756 36 H 0.231 0.769 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.775 -14.813 1.645 14.925 hybrid contribution 0.039 0.315 -0.782 0.844 sum -0.735 -14.499 0.863 14.543 Atomic orbital electron populations 1.22179 0.94610 1.02729 1.03439 1.21589 0.95374 0.79629 1.04246 1.44172 1.63857 1.14908 1.03039 1.16585 1.01376 0.89483 0.80182 1.41525 1.77242 1.17304 1.04288 1.16966 1.17313 0.89469 0.88711 1.40569 1.75694 1.11377 1.02178 1.17935 0.88121 0.84403 0.94332 1.21043 0.97000 0.96266 1.19646 1.20621 0.97034 0.92983 0.97104 1.21674 0.97580 0.97819 1.13772 1.18224 0.89167 0.89149 0.88262 1.19536 0.96492 0.94458 1.36069 0.90168 1.25988 0.98829 0.95650 0.94742 1.70217 1.16119 1.17241 1.29404 0.86415 0.80226 0.82059 0.78906 1.18505 1.20114 1.20077 1.68338 1.33287 0.98987 1.16734 1.16254 0.80238 0.86860 0.82764 1.91106 1.41330 1.14499 1.85407 1.46332 1.61145 1.12099 1.10267 1.21553 0.97878 0.99310 0.82080 1.22033 0.96245 1.01870 1.01761 1.15538 0.79003 0.81699 0.83237 1.90934 1.58122 1.65296 1.29623 0.91980 0.90844 0.91499 0.89776 0.88155 0.77328 0.75626 0.76931 0.89400 0.88980 0.88756 0.92431 0.89195 0.88269 0.91103 0.91977 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.11 1.08 5.63 -4.04 -0.02 1.05 16 3 N -0.53 -7.35 2.63 -120.34 -0.32 -7.66 16 4 C 0.33 4.81 7.54 -152.25 -1.15 3.66 16 5 N -0.85 -8.18 8.85 31.55 0.28 -7.90 16 6 C -0.01 -0.25 6.70 -82.71 -0.55 -0.81 16 7 N -0.66 -13.17 5.48 -9.41 -0.05 -13.22 16 8 C 0.39 9.54 5.11 -155.40 -0.79 8.75 16 9 C -0.31 -7.36 10.04 -38.85 -0.39 -7.75 16 10 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16 11 C -0.29 -7.38 9.83 -38.63 -0.38 -7.76 16 12 C 0.28 7.91 6.55 -85.00 -0.56 7.36 16 13 C -0.43 -12.12 9.13 -37.78 -0.34 -12.47 16 14 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 15 C 0.07 1.93 5.49 -17.35 -0.10 1.84 16 16 N -0.71 -19.52 11.45 55.55 0.64 -18.88 16 17 Si 0.90 19.52 29.56 -169.99 -5.02 14.49 16 18 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 N -0.46 -12.74 6.15 -10.34 -0.06 -12.80 16 22 C 0.55 11.85 7.36 -15.32 -0.11 11.74 16 23 O -0.45 -11.80 12.67 4.96 0.06 -11.73 16 24 N -0.55 -10.32 2.55 -124.31 -0.32 -10.64 16 25 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 26 C -0.16 -2.37 10.24 37.16 0.38 -1.99 16 27 C 0.70 11.92 8.11 -87.40 -0.71 11.21 16 28 O -0.56 -9.96 15.31 5.27 0.08 -9.88 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.53 6.43 -51.93 -0.33 0.20 16 33 H 0.10 0.98 7.38 -51.93 -0.38 0.60 16 34 H 0.40 2.61 6.74 -40.82 -0.28 2.33 16 35 H 0.41 3.64 7.01 -40.82 -0.29 3.35 16 36 H 0.39 6.35 7.05 -40.82 -0.29 6.06 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.26 6.75 8.30 -40.82 -0.34 6.41 16 41 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 42 H 0.10 1.85 7.39 -51.93 -0.38 1.47 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -35.48 372.42 -9.56 -45.04 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.68 Total: 13.63 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: -4.77 Total: 13.94 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: 0.17 Total: -71.10 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.14 Total: -21.61 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.48 -9.56 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164470822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.571 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds