Wall clock time and date at job start Wed Apr 1 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47586 * 2 1 4 4 C 1.37589 * 119.80080 * 269.98032 * 3 2 1 5 5 N 1.37489 * 120.39358 * 0.02562 * 4 3 2 6 6 C 1.37989 * 119.21336 * 179.97438 * 4 3 2 7 7 N 1.41121 * 120.56752 * 180.02562 * 6 4 3 8 8 C 1.38632 * 119.99719 * 180.32878 * 7 6 4 9 9 C 1.39866 * 119.59235 * 111.50112 * 8 7 6 10 10 C 1.38576 * 119.48907 * 179.97438 * 9 8 7 11 11 C 1.38407 * 118.69264 * 0.02562 * 10 9 8 12 12 C 1.40588 * 119.16357 * 359.97438 * 11 10 9 13 13 C 1.41278 * 119.78689 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99635 * 0.02562 * 13 12 11 15 15 C 1.39968 * 120.00503 * 180.02562 * 13 12 11 16 16 N 1.30774 * 119.99952 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00032 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47252 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47374 * 119.99927 * 17 15 13 20 20 H 1.48504 * 109.46942 * 239.99404 * 17 15 13 21 21 N 1.32058 * 119.58801 * 291.23333 * 8 7 6 22 22 C 1.40760 * 118.86202 * 359.73253 * 6 4 3 23 23 O 1.21949 * 120.22699 * 180.29248 * 22 6 4 24 24 N 1.34746 * 119.55623 * 0.53766 * 22 6 4 25 25 C 1.46506 * 119.62003 * 179.75845 * 24 22 6 26 26 C 1.52999 * 109.46972 * 269.72166 * 25 24 22 27 27 C 1.34477 * 120.75874 * 359.47243 * 24 22 6 28 28 O 1.21611 * 119.39425 * 180.25796 * 27 24 22 29 29 H 1.08999 * 109.46922 * 59.99952 * 1 2 3 30 30 H 1.09002 * 109.47428 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47269 * 300.00078 * 1 2 3 32 32 H 1.09006 * 109.47205 * 239.99860 * 2 1 3 33 33 H 1.08999 * 109.46922 * 120.00048 * 2 1 3 34 34 H 0.97001 * 119.99865 * 359.97438 * 5 4 3 35 35 H 0.97001 * 120.00208 * 180.02562 * 5 4 3 36 36 H 0.96998 * 120.00119 * 0.31885 * 7 6 4 37 37 H 1.07995 * 120.25646 * 359.97438 * 9 8 7 38 38 H 1.07993 * 120.65426 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.42046 * 179.97438 * 11 10 9 40 40 H 0.97004 * 119.99903 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47027 * 149.72085 * 25 24 22 42 42 H 1.09003 * 109.47190 * 29.72127 * 25 24 22 43 43 H 1.08992 * 109.47124 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46894 * 59.99974 * 26 25 24 45 45 H 1.08994 * 109.47098 * 300.00292 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2468 2.0257 -1.1939 5 7 2.0188 1.3815 -2.3870 6 6 2.7063 3.3268 -1.1798 7 7 2.9496 4.0151 -2.3875 8 6 3.4177 5.3197 -2.3595 9 6 4.7179 5.5965 -2.7944 10 6 5.1834 6.9014 -2.7660 11 6 4.3409 7.8976 -2.3040 12 6 3.0445 7.5566 -1.8803 13 6 2.1733 8.5630 -1.4069 14 1 2.5039 9.5905 -1.3717 15 6 0.8819 8.2284 -0.9834 16 7 0.4814 6.9843 -1.0264 17 14 -0.2701 9.5594 -0.3581 18 1 0.4179 10.8743 -0.4103 19 1 -1.4858 9.6022 -1.2098 20 1 -0.6582 9.2596 1.0437 21 7 2.6286 6.2865 -1.9274 22 6 2.9223 3.9576 0.0598 23 8 3.3230 5.1087 0.1014 24 7 2.6881 3.2795 1.2005 25 6 2.9175 3.9330 2.4915 26 6 4.3577 3.6806 2.9421 27 6 2.2408 2.0118 1.1674 28 8 2.0332 1.4247 2.2120 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6954 0.4670 -2.3902 35 1 2.1821 1.8411 -3.2254 36 1 2.7894 3.5754 -3.2371 37 1 5.3541 4.7995 -3.1497 38 1 6.1839 7.1365 -3.0978 39 1 4.6751 8.9240 -2.2695 40 1 -0.4138 6.7525 -0.7332 41 1 2.2285 3.5266 3.2319 42 1 2.7511 5.0055 2.3905 43 1 4.5285 4.1671 3.9023 44 1 5.0465 4.0870 2.2016 45 1 4.5241 2.6082 3.0430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164470822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:53 Heat of formation + Delta-G solvation = 19.931953 kcal Electronic energy + Delta-G solvation = -32030.767481 eV Core-core repulsion = 27856.556150 eV Total energy + Delta-G solvation = -4174.211331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.27795 -40.41254 -39.72587 -39.15450 -36.53766 -36.28413 -35.26714 -34.39959 -33.50846 -32.10334 -31.20389 -30.96841 -28.81283 -27.13780 -25.54407 -25.21011 -23.80457 -23.07185 -23.01893 -22.51873 -20.81105 -19.26374 -18.93360 -18.43734 -17.99768 -17.55917 -17.44339 -16.95587 -16.51742 -16.32441 -16.19411 -15.94414 -15.77287 -15.31462 -14.94272 -14.80741 -14.74393 -14.61692 -14.40277 -13.84320 -13.64548 -13.58180 -13.26547 -13.15726 -12.93734 -12.83706 -12.72772 -12.56924 -12.27687 -12.16161 -12.11078 -11.84950 -11.73624 -11.32962 -11.07673 -10.94408 -10.83261 -10.47321 -9.78284 -9.31538 -9.20315 -8.16667 -7.49243 -6.37108 0.45616 0.86503 1.03822 1.13474 1.36384 1.37195 1.51970 1.54000 1.97617 2.24843 2.52653 2.69897 2.85018 2.97549 3.78113 3.92964 3.99133 4.11143 4.11883 4.16294 4.24705 4.32540 4.42257 4.48455 4.51600 4.63237 4.79443 4.82483 4.86513 4.94953 5.01097 5.03849 5.09812 5.12538 5.24896 5.26855 5.29296 5.41656 5.82050 5.99671 6.07857 6.18119 6.24575 6.29458 6.65345 6.70091 6.83683 6.86983 7.05137 7.28331 7.31306 8.41466 8.57328 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.004517 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.567196 B = 6197.680582 C = 6704.523202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.524 5.524 4 C 0.401 3.599 5 N -0.819 5.819 6 C -0.081 4.081 7 N -0.661 5.661 8 C 0.386 3.614 9 C -0.314 4.314 10 C -0.053 4.053 11 C -0.315 4.315 12 C 0.246 3.754 13 C -0.475 4.475 14 H 0.079 0.921 15 C 0.028 3.972 16 N -0.743 5.743 17 Si 0.977 3.023 18 H -0.256 1.256 19 H -0.264 1.264 20 H -0.273 1.273 21 N -0.482 5.482 22 C 0.531 3.469 23 O -0.520 6.520 24 N -0.557 5.557 25 C 0.110 3.890 26 C -0.147 4.147 27 C 0.697 3.303 28 O -0.570 6.570 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.419 0.581 35 H 0.422 0.578 36 H 0.410 0.590 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.266 0.734 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.038 0.962 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -18.509 -0.348 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 N -0.252 5.252 4 C 0.186 3.814 5 N -0.369 5.369 6 C -0.191 4.191 7 N -0.301 5.301 8 C 0.148 3.852 9 C -0.339 4.339 10 C -0.078 4.078 11 C -0.337 4.337 12 C 0.119 3.881 13 C -0.507 4.507 14 H 0.097 0.903 15 C -0.193 4.193 16 N -0.365 5.365 17 Si 0.798 3.202 18 H -0.179 1.179 19 H -0.189 1.189 20 H -0.198 1.198 21 N -0.198 5.198 22 C 0.329 3.671 23 O -0.394 6.394 24 N -0.302 5.302 25 C -0.011 4.011 26 C -0.205 4.205 27 C 0.400 3.600 28 O -0.447 6.447 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.254 0.746 35 H 0.256 0.744 36 H 0.249 0.751 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.058 0.942 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.461 -18.419 0.809 18.495 hybrid contribution 0.250 0.974 -0.553 1.148 sum -1.211 -17.445 0.256 17.489 Atomic orbital electron populations 1.22168 0.93774 1.04571 1.02024 1.22122 0.96018 0.76983 1.06642 1.44528 1.62520 1.16296 1.01883 1.16531 0.95362 0.87875 0.81678 1.41620 1.74280 1.18098 1.02944 1.16826 1.23230 0.91458 0.87583 1.40226 1.76980 1.09779 1.03150 1.18316 0.88463 0.85640 0.92751 1.21453 0.97062 0.96971 1.18463 1.21016 0.98170 0.92652 0.95926 1.21828 0.97654 0.98840 1.15425 1.18685 0.90402 0.90080 0.88968 1.19826 0.97994 0.94594 1.38268 0.90314 1.26827 0.99932 0.98082 0.94459 1.70352 1.16449 1.19187 1.30474 0.85254 0.77892 0.78909 0.78163 1.17909 1.18866 1.19838 1.68335 1.34775 0.99239 1.17478 1.16710 0.79846 0.86487 0.84065 1.91062 1.45225 1.16989 1.86159 1.46402 1.60865 1.12782 1.10127 1.21604 0.99654 0.97804 0.82082 1.21926 0.94045 1.02358 1.02186 1.15673 0.78994 0.81192 0.84168 1.90928 1.58431 1.65259 1.30057 0.91944 0.87406 0.94356 0.85411 0.87890 0.74644 0.74375 0.75137 0.86637 0.85520 0.88295 0.92341 0.87949 0.91113 0.88572 0.94244 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 71.98 0.74 -1.55 16 2 C 0.10 1.47 5.63 86.38 0.49 1.96 16 3 N -0.52 -13.07 2.63 -653.03 -1.72 -14.78 16 4 C 0.40 10.47 7.54 131.67 0.99 11.47 16 5 N -0.82 -11.87 8.85 -54.09 -0.48 -12.35 16 6 C -0.08 -3.10 6.70 38.20 0.26 -2.85 16 7 N -0.66 -26.20 5.48 -183.70 -1.01 -27.21 16 8 C 0.39 19.41 5.11 133.47 0.68 20.09 16 9 C -0.31 -14.79 10.04 22.74 0.23 -14.56 16 10 C -0.05 -2.53 10.15 22.39 0.23 -2.30 16 11 C -0.31 -17.05 9.83 22.88 0.23 -16.82 16 12 C 0.25 14.77 6.55 40.18 0.26 15.03 16 13 C -0.48 -28.14 9.13 23.44 0.21 -27.93 16 14 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 15 C 0.03 1.57 5.49 85.27 0.47 2.04 16 16 N -0.74 -42.91 11.45 21.83 0.25 -42.66 16 17 Si 0.98 41.74 29.56 68.60 2.03 43.77 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 N -0.48 -28.12 6.15 -186.62 -1.15 -29.27 16 22 C 0.53 24.02 7.36 84.86 0.62 24.64 16 23 O -0.52 -28.84 12.67 -5.15 -0.07 -28.90 16 24 N -0.56 -21.35 2.55 -783.76 -2.00 -23.35 16 25 C 0.11 3.90 5.79 86.38 0.50 4.40 16 26 C -0.15 -4.43 10.24 71.98 0.74 -3.69 16 27 C 0.70 22.96 8.11 179.22 1.45 24.41 16 28 O -0.57 -19.37 15.31 -4.07 -0.06 -19.43 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.13 0.77 6.43 -2.38 -0.02 0.75 16 33 H 0.10 1.58 7.38 -2.39 -0.02 1.57 16 34 H 0.42 2.87 6.74 -92.71 -0.62 2.25 16 35 H 0.42 5.57 7.01 -92.71 -0.65 4.92 16 36 H 0.41 12.61 7.05 -92.71 -0.65 11.96 16 37 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 39 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.27 14.20 8.30 -92.70 -0.77 13.43 16 41 H 0.10 3.28 7.36 -2.39 -0.02 3.26 16 42 H 0.07 2.90 7.39 -2.39 -0.02 2.88 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -85.50 372.42 3.04 -82.46 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.85 Total: 37.38 kcal Atomic # 6 Polarization: 26.25 SS G_CDS: 8.10 Total: 34.34 kcal Atomic # 7 Polarization: -143.51 SS G_CDS: -6.10 Total: -149.62 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.13 Total: -48.34 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -85.50 3.04 -82.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164470822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.396 kcal (2) G-P(sol) polarization free energy of solvation -85.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds