Wall clock time and date at job start Wed Apr 1 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 120.00300 * 2 1 4 4 N 1.34779 * 119.99962 * 179.97438 * 2 1 3 5 5 C 1.47164 * 121.30953 * 333.98416 * 4 2 1 6 6 C 1.50403 * 109.01471 * 221.69580 * 5 4 2 7 7 O 1.21287 * 118.32487 * 166.71119 * 6 5 4 8 8 N 1.33520 * 123.21823 * 346.84497 * 6 5 4 9 9 C 1.45794 * 124.53524 * 4.63846 * 8 6 5 10 10 C 1.46555 * 121.30846 * 153.95946 * 4 2 1 11 11 C 1.53681 * 110.22095 * 358.29128 * 10 4 2 12 12 C 1.54529 * 104.84888 * 240.89046 * 11 10 4 13 13 N 1.48604 * 104.61550 * 23.75670 * 12 11 10 14 14 C 1.38823 * 111.00205 * 201.26301 * 13 12 11 15 15 C 1.39960 * 119.97032 * 119.85471 * 14 13 12 16 16 N 1.32127 * 120.31970 * 179.70745 * 15 14 13 17 17 C 1.31928 * 120.27306 * 0.57271 * 16 15 14 18 18 C 1.40691 * 119.93133 * 359.70328 * 17 16 15 19 19 C 1.41264 * 120.15530 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00536 * 7.02667 * 19 18 17 21 21 C 1.40061 * 119.99776 * 187.02361 * 19 18 17 22 22 N 1.30728 * 120.00211 * 7.06017 * 21 19 18 23 23 Si 1.86804 * 119.99923 * 187.05441 * 21 19 18 24 24 H 1.48503 * 109.46872 * 60.00272 * 23 21 19 25 25 H 1.48496 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47240 * 300.00443 * 23 21 19 27 27 N 1.32237 * 119.97113 * 300.12831 * 14 13 12 28 28 C 1.48693 * 104.31292 * 320.87775 * 13 12 11 29 29 H 1.09000 * 109.47140 * 175.29159 * 1 2 3 30 30 H 1.09005 * 109.46948 * 295.28924 * 1 2 3 31 31 H 1.08997 * 109.47177 * 55.28883 * 1 2 3 32 32 H 1.08993 * 109.56491 * 341.58609 * 5 4 2 33 33 H 1.09003 * 109.55843 * 101.81286 * 5 4 2 34 34 H 0.96994 * 117.70585 * 184.74105 * 8 6 5 35 35 H 1.09003 * 109.21073 * 218.87582 * 9 8 6 36 36 H 1.09002 * 109.17543 * 99.52920 * 9 8 6 37 37 H 1.08995 * 110.36467 * 359.73453 * 11 10 4 38 38 H 1.09004 * 110.35788 * 122.05108 * 11 10 4 39 39 H 1.09004 * 110.40200 * 142.54386 * 12 11 10 40 40 H 1.09002 * 110.40817 * 264.97237 * 12 11 10 41 41 H 1.08001 * 119.84041 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.03983 * 179.73218 * 17 16 15 43 43 H 0.97001 * 120.00093 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.43351 * 280.19844 * 28 13 12 45 45 H 1.09001 * 110.43481 * 157.69611 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5847 -2.3942 0.5526 6 6 2.6284 -3.1328 1.3445 7 8 2.2679 -4.0329 2.0731 8 7 3.9308 -2.8442 1.2864 9 6 4.4978 -1.7303 0.5359 10 6 3.5359 -1.2645 -0.5491 11 6 3.9778 0.0937 -1.1164 12 6 4.2357 -0.1690 -2.6173 13 7 3.4130 -1.3649 -2.9354 14 6 3.8822 -2.0026 -4.0758 15 6 4.3161 -3.3313 -4.0054 16 7 4.7586 -3.9467 -5.0877 17 6 4.8057 -3.3102 -6.2423 18 6 4.3776 -1.9725 -6.3244 19 6 4.4256 -1.2866 -7.5584 20 1 4.6827 -1.8186 -8.4624 21 6 4.1395 0.0835 -7.6096 22 7 3.9640 0.7564 -6.5026 23 14 4.0090 0.9494 -9.2596 24 1 2.9251 0.3265 -10.0611 25 1 3.7014 2.3858 -9.0419 26 1 5.2973 0.8244 -9.9876 27 7 3.9237 -1.3523 -5.2264 28 6 3.5555 -2.2377 -1.7400 29 1 -0.3633 -1.0242 -0.0844 30 1 -0.3633 0.4390 0.9292 31 1 -0.3633 0.5852 -0.8447 32 1 0.7497 -2.1337 1.2029 33 1 1.2298 -3.0259 -0.2618 34 1 4.5418 -3.4163 1.7765 35 1 5.4328 -2.0478 0.0743 36 1 4.6971 -0.9036 1.2179 37 1 3.1865 0.8326 -0.9912 38 1 4.8924 0.4294 -0.6275 39 1 3.9124 0.6844 -3.2134 40 1 5.2915 -0.3769 -2.7908 41 1 4.2844 -3.8578 -3.0629 42 1 5.1721 -3.8155 -7.1236 43 1 3.7656 1.7053 -6.5381 44 1 4.5013 -2.7784 -1.7742 45 1 2.7198 -2.9346 -1.6758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166316467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:49 Heat of formation + Delta-G solvation = 41.209006 kcal Electronic energy + Delta-G solvation = -31550.277624 eV Core-core repulsion = 27376.988935 eV Total energy + Delta-G solvation = -4173.288688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65226 -39.61262 -39.34940 -37.85409 -35.99499 -34.62840 -34.08889 -32.65555 -31.51079 -29.93325 -29.27603 -28.79463 -27.52348 -25.87265 -25.67553 -22.90951 -22.60262 -21.31159 -20.93251 -20.49690 -18.46404 -17.71273 -17.60450 -17.45746 -16.59252 -16.29854 -16.15788 -15.59670 -15.42430 -15.24628 -15.07796 -14.84742 -14.47700 -14.22527 -13.77763 -13.59389 -13.39017 -13.00161 -12.82883 -12.70379 -12.53698 -12.41617 -12.16757 -11.86891 -11.66186 -11.54394 -11.44817 -11.35314 -11.18935 -10.98187 -10.79156 -10.48657 -10.42336 -9.93241 -9.59918 -9.53778 -9.43729 -9.19273 -8.57705 -8.49357 -7.60070 -7.23620 -6.57348 -4.76711 2.17447 2.29647 2.42048 2.54569 2.90139 2.98858 3.00393 3.00613 3.13664 3.79594 4.03481 4.06213 4.36903 4.52029 4.54850 4.66527 4.76514 4.81465 5.02379 5.08939 5.13044 5.25331 5.32161 5.41692 5.54028 5.60899 5.67776 5.71380 5.77647 5.90382 5.93684 6.11132 6.19601 6.35459 6.42721 6.45372 6.66509 6.81929 6.87243 6.94855 6.97275 7.09731 7.28058 7.37559 7.77834 7.85142 7.91834 7.98381 8.39626 8.60974 9.20889 9.78288 10.05814 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.003483 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.610162 B = 8037.100539 C = 9134.202533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.532 3.468 3 O -0.506 6.506 4 N -0.614 5.614 5 C 0.099 3.901 6 C 0.517 3.483 7 O -0.550 6.550 8 N -0.713 5.713 9 C 0.109 3.891 10 C 0.161 3.839 11 C -0.192 4.192 12 C 0.062 3.938 13 N -0.444 5.444 14 C 0.279 3.721 15 C -0.162 4.162 16 N -0.415 5.415 17 C -0.084 4.084 18 C 0.227 3.773 19 C -0.411 4.411 20 H 0.092 0.908 21 C 0.068 3.932 22 N -0.704 5.704 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.263 1.263 27 N -0.462 5.462 28 C 0.034 3.966 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.401 0.599 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.170 0.830 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.040 0.960 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.071 0.929 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 1.271 12.963 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.324 3.676 3 O -0.385 6.385 4 N -0.350 5.350 5 C -0.026 4.026 6 C 0.303 3.697 7 O -0.428 6.428 8 N -0.364 5.364 9 C -0.017 4.017 10 C 0.075 3.925 11 C -0.229 4.229 12 C -0.065 4.065 13 N -0.163 5.163 14 C 0.037 3.963 15 C -0.322 4.322 16 N -0.127 5.127 17 C -0.254 4.254 18 C 0.100 3.900 19 C -0.442 4.442 20 H 0.110 0.890 21 C -0.159 4.159 22 N -0.324 5.324 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.187 1.187 27 N -0.183 5.183 28 C -0.095 4.095 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.237 0.763 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.185 0.815 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.897 1.905 13.251 13.943 hybrid contribution 1.032 -0.327 -0.644 1.259 sum -2.865 1.578 12.607 13.024 Atomic orbital electron populations 1.22034 0.91580 1.04783 1.05371 1.20655 0.90412 0.82138 0.74404 1.90145 1.68959 1.32279 1.47069 1.47779 1.16630 1.08785 1.61760 1.21838 0.95716 0.86683 0.98376 1.20213 0.83770 0.83791 0.81951 1.90807 1.79896 1.32219 1.39836 1.45419 1.07669 1.31836 1.51510 1.21887 0.96777 0.89233 0.93807 1.21126 0.81085 0.98533 0.91741 1.24369 1.06624 0.97368 0.94503 1.22998 0.95071 0.93725 0.94693 1.61833 1.48819 1.05572 1.00041 1.20781 0.92149 0.91314 0.92062 1.22549 1.16907 0.95226 0.97563 1.67553 1.09109 1.36947 0.99073 1.23067 1.11828 0.95121 0.95408 1.19218 0.88984 0.89712 0.92095 1.19619 1.37865 0.93336 0.93422 0.89036 1.26121 0.93540 0.97990 0.98258 1.70011 1.25454 1.08625 1.28353 0.86294 0.80032 0.78362 0.81712 1.18681 1.20036 1.18747 1.69159 1.18648 1.34340 0.96155 1.23516 1.02356 0.95049 0.88589 0.90236 0.88810 0.87986 0.86152 0.87444 0.76291 0.89027 0.90485 0.81522 0.90753 0.88392 0.94184 0.85753 0.85008 0.90983 0.91145 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.77 36.00 0.35 -1.07 16 2 C 0.53 6.23 7.21 -10.99 -0.08 6.15 16 3 O -0.51 -7.38 13.58 5.56 0.08 -7.31 16 4 N -0.61 -6.84 2.77 -159.33 -0.44 -7.28 16 5 C 0.10 0.93 5.05 -4.98 -0.03 0.91 16 6 C 0.52 5.85 7.82 -11.69 -0.09 5.76 16 7 O -0.55 -7.96 17.80 5.55 0.10 -7.87 16 8 N -0.71 -6.90 5.43 -61.56 -0.33 -7.24 16 9 C 0.11 1.05 5.89 -4.78 -0.03 1.02 16 10 C 0.16 1.98 0.95 -131.37 -0.12 1.85 16 11 C -0.19 -2.72 5.71 -25.57 -0.15 -2.87 16 12 C 0.06 1.11 6.25 -2.08 -0.01 1.10 16 13 N -0.44 -8.59 5.47 -168.73 -0.92 -9.51 16 14 C 0.28 6.55 6.29 -155.02 -0.97 5.57 16 15 C -0.16 -3.73 10.01 -16.78 -0.17 -3.89 16 16 N -0.42 -10.24 10.47 -12.11 -0.13 -10.37 16 17 C -0.08 -2.09 10.97 -16.58 -0.18 -2.27 16 18 C 0.23 6.01 6.52 -84.83 -0.55 5.46 16 19 C -0.41 -10.35 9.15 -37.75 -0.35 -10.70 16 20 H 0.09 2.11 7.86 -52.49 -0.41 1.70 16 21 C 0.07 1.63 5.47 -17.34 -0.09 1.54 16 22 N -0.70 -17.57 11.58 55.55 0.64 -16.93 16 23 Si 0.91 17.50 29.57 -169.99 -5.03 12.47 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 27 N -0.46 -12.19 7.89 -10.14 -0.08 -12.27 16 28 C 0.03 0.51 4.34 -2.41 -0.01 0.49 16 29 H 0.08 0.50 6.60 -51.93 -0.34 0.16 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.12 0.85 6.96 -51.93 -0.36 0.49 16 33 H 0.11 0.95 7.27 -51.93 -0.38 0.58 16 34 H 0.40 3.36 8.80 -40.82 -0.36 3.00 16 35 H 0.09 0.79 7.77 -51.93 -0.40 0.39 16 36 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 37 H 0.17 2.65 3.46 -58.82 -0.20 2.45 16 38 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 39 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 40 H 0.04 0.76 7.97 -51.93 -0.41 0.34 16 41 H 0.13 2.51 5.76 -52.49 -0.30 2.21 16 42 H 0.13 2.99 8.06 -52.49 -0.42 2.56 16 43 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 44 H 0.07 1.06 5.72 -51.93 -0.30 0.77 16 45 H 0.08 1.23 6.60 -51.93 -0.34 0.89 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -32.61 358.48 -8.65 -41.26 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.45 Total: 10.59 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.48 Total: 9.05 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.26 Total: -63.59 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.17 Total: -15.17 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.61 -8.65 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166316467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.469 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds