Wall clock time and date at job start Wed Apr 1 2020 03:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 120.00300 * 2 1 4 4 N 1.34779 * 119.99962 * 179.97438 * 2 1 3 5 5 C 1.47164 * 121.30953 * 333.98416 * 4 2 1 6 6 C 1.50403 * 109.01471 * 221.69580 * 5 4 2 7 7 O 1.21287 * 118.32487 * 166.71119 * 6 5 4 8 8 N 1.33520 * 123.21823 * 346.84497 * 6 5 4 9 9 C 1.45794 * 124.53524 * 4.63846 * 8 6 5 10 10 C 1.46555 * 121.30846 * 153.95946 * 4 2 1 11 11 C 1.53681 * 110.22095 * 358.29128 * 10 4 2 12 12 C 1.54529 * 104.84888 * 240.89046 * 11 10 4 13 13 N 1.48604 * 104.61550 * 23.75670 * 12 11 10 14 14 C 1.38823 * 111.00205 * 201.26301 * 13 12 11 15 15 C 1.39960 * 119.97032 * 119.85471 * 14 13 12 16 16 N 1.32127 * 120.31970 * 179.70745 * 15 14 13 17 17 C 1.31928 * 120.27306 * 0.57271 * 16 15 14 18 18 C 1.40691 * 119.93133 * 359.70328 * 17 16 15 19 19 C 1.41264 * 120.15530 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00536 * 7.02667 * 19 18 17 21 21 C 1.40061 * 119.99776 * 187.02361 * 19 18 17 22 22 N 1.30728 * 120.00211 * 7.06017 * 21 19 18 23 23 Si 1.86804 * 119.99923 * 187.05441 * 21 19 18 24 24 H 1.48503 * 109.46872 * 60.00272 * 23 21 19 25 25 H 1.48496 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47240 * 300.00443 * 23 21 19 27 27 N 1.32237 * 119.97113 * 300.12831 * 14 13 12 28 28 C 1.48693 * 104.31292 * 320.87775 * 13 12 11 29 29 H 1.09000 * 109.47140 * 175.29159 * 1 2 3 30 30 H 1.09005 * 109.46948 * 295.28924 * 1 2 3 31 31 H 1.08997 * 109.47177 * 55.28883 * 1 2 3 32 32 H 1.08993 * 109.56491 * 341.58609 * 5 4 2 33 33 H 1.09003 * 109.55843 * 101.81286 * 5 4 2 34 34 H 0.96994 * 117.70585 * 184.74105 * 8 6 5 35 35 H 1.09003 * 109.21073 * 218.87582 * 9 8 6 36 36 H 1.09002 * 109.17543 * 99.52920 * 9 8 6 37 37 H 1.08995 * 110.36467 * 359.73453 * 11 10 4 38 38 H 1.09004 * 110.35788 * 122.05108 * 11 10 4 39 39 H 1.09004 * 110.40200 * 142.54386 * 12 11 10 40 40 H 1.09002 * 110.40817 * 264.97237 * 12 11 10 41 41 H 1.08001 * 119.84041 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.03983 * 179.73218 * 17 16 15 43 43 H 0.97001 * 120.00093 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.43351 * 280.19844 * 28 13 12 45 45 H 1.09001 * 110.43481 * 157.69611 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5847 -2.3942 0.5526 6 6 2.6284 -3.1328 1.3445 7 8 2.2679 -4.0329 2.0731 8 7 3.9308 -2.8442 1.2864 9 6 4.4978 -1.7303 0.5359 10 6 3.5359 -1.2645 -0.5491 11 6 3.9778 0.0937 -1.1164 12 6 4.2357 -0.1690 -2.6173 13 7 3.4130 -1.3649 -2.9354 14 6 3.8822 -2.0026 -4.0758 15 6 4.3161 -3.3313 -4.0054 16 7 4.7586 -3.9467 -5.0877 17 6 4.8057 -3.3102 -6.2423 18 6 4.3776 -1.9725 -6.3244 19 6 4.4256 -1.2866 -7.5584 20 1 4.6827 -1.8186 -8.4624 21 6 4.1395 0.0835 -7.6096 22 7 3.9640 0.7564 -6.5026 23 14 4.0090 0.9494 -9.2596 24 1 2.9251 0.3265 -10.0611 25 1 3.7014 2.3858 -9.0419 26 1 5.2973 0.8244 -9.9876 27 7 3.9237 -1.3523 -5.2264 28 6 3.5555 -2.2377 -1.7400 29 1 -0.3633 -1.0242 -0.0844 30 1 -0.3633 0.4390 0.9292 31 1 -0.3633 0.5852 -0.8447 32 1 0.7497 -2.1337 1.2029 33 1 1.2298 -3.0259 -0.2618 34 1 4.5418 -3.4163 1.7765 35 1 5.4328 -2.0478 0.0743 36 1 4.6971 -0.9036 1.2179 37 1 3.1865 0.8326 -0.9912 38 1 4.8924 0.4294 -0.6275 39 1 3.9124 0.6844 -3.2134 40 1 5.2915 -0.3769 -2.7908 41 1 4.2844 -3.8578 -3.0629 42 1 5.1721 -3.8155 -7.1236 43 1 3.7656 1.7053 -6.5381 44 1 4.5013 -2.7784 -1.7742 45 1 2.7198 -2.9346 -1.6758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166316467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:48 Heat of formation + Delta-G solvation = 15.354968 kcal Electronic energy + Delta-G solvation = -31551.398739 eV Core-core repulsion = 27376.988935 eV Total energy + Delta-G solvation = -4174.409804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.68124 -41.12257 -40.42059 -39.19799 -37.15312 -35.92009 -35.48671 -34.15110 -33.18091 -31.05342 -30.44584 -30.16673 -28.42800 -27.68574 -26.75688 -24.45088 -24.13539 -22.57792 -22.22846 -21.71446 -19.58052 -19.36440 -18.60484 -18.38001 -18.00930 -17.42865 -17.25270 -17.18272 -16.75351 -16.64309 -16.32617 -16.04131 -15.76175 -15.39001 -14.99592 -14.88569 -14.65919 -14.24687 -14.06705 -13.67877 -13.52373 -13.45824 -13.24748 -13.23147 -13.12111 -12.97069 -12.92661 -12.58081 -12.53964 -12.37798 -12.25709 -12.06686 -11.74593 -11.46527 -11.39139 -11.21647 -10.35617 -10.30963 -10.15708 -9.54714 -9.43006 -8.99323 -8.38508 -6.68535 0.58600 1.07610 1.29233 1.40866 1.42394 1.53229 1.54546 1.68232 2.18084 2.20136 2.62073 2.82034 3.11500 3.40798 3.46620 3.63922 3.73433 3.80107 4.00569 4.05522 4.17051 4.23551 4.27932 4.32453 4.38796 4.40997 4.45016 4.50743 4.63584 4.65585 4.71334 4.77214 4.82624 4.93258 5.07716 5.09209 5.12206 5.13380 5.55860 5.62281 5.68811 5.79270 6.01514 6.12785 6.13680 6.22645 6.55070 6.73070 6.98812 7.03783 7.31839 7.91081 8.27915 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.003483 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.610162 B = 8037.100539 C = 9134.202533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.524 3.476 3 O -0.540 6.540 4 N -0.614 5.614 5 C 0.099 3.901 6 C 0.516 3.484 7 O -0.584 6.584 8 N -0.705 5.705 9 C 0.115 3.885 10 C 0.167 3.833 11 C -0.182 4.182 12 C 0.070 3.930 13 N -0.454 5.454 14 C 0.276 3.724 15 C -0.165 4.165 16 N -0.424 5.424 17 C -0.106 4.106 18 C 0.197 3.803 19 C -0.436 4.436 20 H 0.104 0.896 21 C 0.026 3.974 22 N -0.738 5.738 23 Si 0.992 3.008 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.254 1.254 27 N -0.494 5.494 28 C 0.036 3.964 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.149 0.851 33 H 0.117 0.883 34 H 0.409 0.591 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.285 0.715 44 H 0.073 0.927 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 1.366 13.923 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.318 3.682 3 O -0.420 6.420 4 N -0.349 5.349 5 C -0.025 4.025 6 C 0.302 3.698 7 O -0.465 6.465 8 N -0.356 5.356 9 C -0.011 4.011 10 C 0.081 3.919 11 C -0.218 4.218 12 C -0.057 4.057 13 N -0.172 5.172 14 C 0.033 3.967 15 C -0.326 4.326 16 N -0.136 5.136 17 C -0.276 4.276 18 C 0.071 3.929 19 C -0.468 4.468 20 H 0.122 0.878 21 C -0.198 4.198 22 N -0.359 5.359 23 Si 0.811 3.189 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.177 1.177 27 N -0.216 5.216 28 C -0.092 4.092 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.166 0.834 33 H 0.134 0.866 34 H 0.246 0.754 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.177 0.823 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.480 1.974 14.224 15.043 hybrid contribution 1.200 -0.362 -0.850 1.515 sum -3.280 1.613 13.374 13.864 Atomic orbital electron populations 1.22076 0.88579 1.06310 1.06306 1.21373 0.91907 0.81619 0.73297 1.90126 1.69879 1.33399 1.48630 1.47833 1.16221 1.09439 1.61427 1.22015 0.95812 0.85808 0.98878 1.20477 0.84324 0.83384 0.81585 1.90801 1.80445 1.33816 1.41428 1.45376 1.07536 1.31679 1.51007 1.21858 0.96298 0.89693 0.93207 1.20946 0.82709 0.96520 0.91734 1.24274 1.07497 0.98461 0.91614 1.22836 0.93728 0.92063 0.97039 1.61777 1.48463 1.06647 1.00360 1.21179 0.91222 0.91743 0.92600 1.23017 1.16013 0.95388 0.98199 1.67573 1.09394 1.37223 0.99413 1.23247 1.12982 0.95110 0.96216 1.19653 0.89736 0.90626 0.92906 1.20060 1.38522 0.94528 0.93646 0.87825 1.27062 0.92458 0.98117 1.02187 1.70109 1.25787 1.09188 1.30786 0.85104 0.80258 0.77061 0.76437 1.18331 1.19326 1.17748 1.69141 1.19851 1.35453 0.97148 1.23605 1.02702 0.95215 0.87712 0.88179 0.86653 0.88417 0.83375 0.86561 0.75371 0.87493 0.89112 0.82332 0.88780 0.91799 0.95655 0.82894 0.83657 0.90440 0.90915 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.77 71.24 0.70 -1.64 16 2 C 0.52 11.33 7.21 87.66 0.63 11.96 16 3 O -0.54 -15.23 13.58 -3.03 -0.04 -15.27 16 4 N -0.61 -12.29 2.77 -776.38 -2.15 -14.44 16 5 C 0.10 1.58 5.05 85.41 0.43 2.01 16 6 C 0.52 10.40 7.82 87.76 0.69 11.08 16 7 O -0.58 -15.83 17.80 -3.05 -0.05 -15.88 16 8 N -0.71 -11.80 5.43 -467.77 -2.54 -14.34 16 9 C 0.11 1.90 5.89 86.28 0.51 2.41 16 10 C 0.17 3.80 0.95 3.86 0.00 3.81 16 11 C -0.18 -5.03 5.71 31.34 0.18 -4.85 16 12 C 0.07 2.59 6.25 86.49 0.54 3.13 16 13 N -0.45 -17.65 5.47 -687.73 -3.76 -21.42 16 14 C 0.28 13.14 6.29 133.38 0.84 13.98 16 15 C -0.17 -7.57 10.01 85.07 0.85 -6.72 16 16 N -0.42 -21.06 10.47 -192.23 -2.01 -23.07 16 17 C -0.11 -5.44 10.97 85.28 0.94 -4.50 16 18 C 0.20 10.79 6.52 40.15 0.26 11.05 16 19 C -0.44 -22.48 9.15 23.46 0.21 -22.26 16 20 H 0.10 4.86 7.86 -2.91 -0.02 4.83 16 21 C 0.03 1.26 5.47 85.30 0.47 1.73 16 22 N -0.74 -37.85 11.58 21.84 0.25 -37.60 16 23 Si 0.99 35.79 29.57 68.60 2.03 37.81 16 24 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 25 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 26 H -0.25 -8.70 7.11 99.48 0.71 -8.00 16 27 N -0.49 -26.93 7.89 -186.00 -1.47 -28.40 16 28 C 0.04 1.02 4.34 86.23 0.37 1.39 16 29 H 0.10 0.92 6.60 -2.39 -0.02 0.91 16 30 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.15 1.55 6.96 -2.39 -0.02 1.54 16 33 H 0.12 1.72 7.27 -2.39 -0.02 1.70 16 34 H 0.41 5.82 8.80 -92.71 -0.82 5.00 16 35 H 0.11 1.51 7.77 -2.39 -0.02 1.50 16 36 H 0.09 1.36 8.01 -2.39 -0.02 1.34 16 37 H 0.16 5.00 3.46 -111.47 -0.39 4.62 16 38 H 0.09 2.21 7.66 -2.39 -0.02 2.19 16 39 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.02 0.99 7.97 -2.39 -0.02 0.97 16 41 H 0.15 5.96 5.76 -2.91 -0.02 5.94 16 42 H 0.15 6.74 8.06 -2.91 -0.02 6.72 16 43 H 0.28 13.26 8.29 -92.71 -0.77 12.49 16 44 H 0.07 2.06 5.72 -2.39 -0.01 2.05 16 45 H 0.09 2.48 6.60 -2.39 -0.02 2.47 16 Total: -1.00 -73.29 358.48 -2.26 -75.55 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.13 Total: 34.49 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 7.62 Total: 22.57 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -11.68 Total: -139.27 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.10 Total: -31.15 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.81 kcal Total: -73.29 -2.26 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166316467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.905 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds