Wall clock time and date at job start Wed Apr 1 2020 03:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99814 * 2 1 4 4 C 1.38753 * 120.05719 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02482 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.47035 * 219.99785 * 9 8 7 11 11 C 1.53008 * 109.47152 * 100.00257 * 9 8 7 12 12 N 1.46495 * 109.47000 * 184.99887 * 11 9 8 13 13 C 1.34772 * 120.00005 * 180.02562 * 12 11 9 14 14 O 1.21597 * 119.99765 * 359.97438 * 13 12 11 15 15 C 1.47519 * 120.00180 * 179.97438 * 13 12 11 16 16 C 1.36604 * 125.77100 * 179.70959 * 15 13 12 17 17 N 1.34817 * 106.83625 * 179.89490 * 16 15 13 18 18 C 1.46505 * 126.59025 * 180.10579 * 17 16 15 19 19 N 1.40210 * 106.81205 * 0.36269 * 17 16 15 20 20 N 1.28750 * 108.36754 * 359.76939 * 19 17 16 21 21 N 1.46493 * 109.47543 * 340.00084 * 9 8 7 22 22 C 1.36938 * 119.99930 * 275.00467 * 21 9 8 23 23 H 1.07998 * 120.00015 * 359.97438 * 22 21 9 24 24 C 1.38811 * 120.00033 * 179.97438 * 22 21 9 25 25 N 1.31616 * 120.00212 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99934 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47126 * 59.99928 * 26 24 22 28 28 H 1.48498 * 109.46905 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47136 * 300.00037 * 26 24 22 30 30 H 1.09000 * 109.47372 * 59.99966 * 1 2 3 31 31 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47156 * 299.99662 * 1 2 3 33 33 H 1.08002 * 120.02760 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 35 35 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.46770 * 304.99516 * 11 9 8 38 38 H 1.08993 * 109.46892 * 64.99732 * 11 9 8 39 39 H 0.97002 * 120.00437 * 359.97438 * 12 11 9 40 40 H 1.08000 * 126.58000 * 0.04439 * 16 15 13 41 41 H 1.08998 * 109.47430 * 270.27902 * 18 17 16 42 42 H 1.09003 * 109.47253 * 30.28039 * 18 17 16 43 43 H 1.08998 * 109.46870 * 150.27907 * 18 17 16 44 44 H 0.96999 * 120.00628 * 95.00066 * 21 9 8 45 45 H 0.97001 * 120.00246 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0005 9 6 4.2538 0.0223 -0.0017 10 1 3.7917 -0.7118 -0.6619 11 6 4.3240 -0.5420 1.4188 12 7 5.2201 -1.7007 1.4401 13 6 5.4363 -2.3643 2.5931 14 8 4.8878 -2.0009 3.6157 15 6 6.3382 -3.5314 2.6145 16 6 6.6448 -4.2836 3.7128 17 7 7.4944 -5.2464 3.3020 18 6 8.0945 -6.2939 4.1320 19 7 7.6977 -5.0489 1.9288 20 7 7.0019 -4.0310 1.5580 21 7 5.6072 0.3217 -0.4756 22 6 5.8739 0.3406 -1.8186 23 1 5.0865 0.1344 -2.5284 24 6 7.1562 0.6248 -2.2677 25 7 8.1157 0.8766 -1.4027 26 14 7.5201 0.6500 -4.0998 27 1 6.6734 1.6768 -4.7586 28 1 8.9527 0.9762 -4.3155 29 1 7.2235 -0.6837 -4.6817 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3203 0.0005 34 1 1.3339 4.5114 0.0046 35 1 3.7920 4.6381 -0.0014 36 1 5.1344 2.5754 -0.0019 37 1 4.7037 0.2235 2.0954 38 1 3.3276 -0.8474 1.7380 39 1 5.6573 -1.9909 0.6243 40 1 6.2754 -4.1367 4.7170 41 1 9.0377 -5.9352 4.5441 42 1 7.4150 -6.5464 4.9461 43 1 8.2773 -7.1795 3.5234 44 1 6.3146 0.5066 0.1619 45 1 9.0119 1.0749 -1.7165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198702802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:55 Heat of formation + Delta-G solvation = 73.147217 kcal Electronic energy + Delta-G solvation = -29902.784681 eV Core-core repulsion = 25730.880937 eV Total energy + Delta-G solvation = -4171.903744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11077 -39.90548 -38.91923 -37.15179 -35.75546 -34.70259 -33.44797 -31.95576 -30.90834 -29.68414 -29.60982 -28.28448 -27.28903 -26.87608 -24.12355 -23.21709 -22.41654 -22.09599 -21.50802 -20.12292 -19.98306 -18.08331 -17.62271 -17.15716 -16.25598 -16.07989 -15.86241 -15.77950 -15.38810 -15.13825 -14.80889 -14.54717 -14.34951 -13.90892 -13.83197 -13.66705 -13.36837 -13.34550 -13.07080 -12.77338 -12.74017 -12.32377 -12.07843 -11.97241 -11.66125 -11.21315 -11.13787 -10.89530 -10.81764 -10.73356 -10.66551 -10.43284 -10.40198 -10.08689 -9.82694 -9.66078 -9.25391 -8.96845 -8.52251 -8.28044 -7.68177 -7.02572 -5.75225 -3.06480 1.15449 1.85567 1.89656 1.93886 2.01782 3.47794 3.52773 3.53095 3.54548 3.60881 3.62074 4.25517 4.29509 4.32650 4.60859 4.71323 4.82077 4.98238 5.05878 5.10417 5.21324 5.26909 5.31480 5.35514 5.54584 5.58189 5.59300 5.64660 5.76167 5.86911 5.91431 6.03766 6.05356 6.28935 6.32338 6.39453 6.51162 6.66448 6.78275 6.92047 6.97545 7.23472 7.40830 7.75846 7.80427 7.87216 8.14731 8.41140 8.58437 9.54084 10.04239 10.41399 11.46099 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007998 B = 0.003794 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.246626 B = 7377.604947 C = 9915.737330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.043 4.043 8 C -0.115 4.115 9 C 0.208 3.792 10 H 0.071 0.929 11 C 0.124 3.876 12 N -0.693 5.693 13 C 0.600 3.400 14 O -0.555 6.555 15 C -0.093 4.093 16 C 0.086 3.914 17 N -0.370 5.370 18 C 0.090 3.910 19 N -0.068 5.068 20 N -0.191 5.191 21 N -0.715 5.715 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.004 4.004 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.285 1.285 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.419 0.581 40 H 0.203 0.797 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -7.931 11.692 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.076 3.924 4 C -0.238 4.238 5 C -0.114 4.114 6 C -0.182 4.182 7 C -0.061 4.061 8 C -0.120 4.120 9 C 0.097 3.903 10 H 0.088 0.912 11 C 0.000 4.000 12 N -0.343 5.343 13 C 0.384 3.616 14 O -0.433 6.433 15 C -0.233 4.233 16 C -0.070 4.070 17 N -0.155 5.155 18 C -0.052 4.052 19 N -0.048 5.048 20 N -0.065 5.065 21 N -0.356 5.356 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.220 0.780 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.222 0.778 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.482 -8.421 10.969 16.223 hybrid contribution -0.009 0.519 -0.314 0.607 sum -8.492 -7.903 10.655 15.751 Atomic orbital electron populations 1.22954 0.79461 1.03302 1.00831 1.86094 1.20411 1.27189 1.88931 1.18952 0.91966 0.83795 0.97678 1.21038 0.99160 0.92624 1.11008 1.20781 0.94725 0.96416 0.99443 1.21078 0.93699 0.98556 1.04912 1.21107 1.01387 0.90277 0.93355 1.20433 0.89909 0.98302 1.03323 1.19237 0.87189 0.91563 0.92313 0.91159 1.21601 0.93358 0.87023 0.98060 1.45783 1.46965 1.30157 1.11424 1.16725 0.80031 0.80896 0.83994 1.90763 1.51342 1.68138 1.33100 1.21587 1.07952 1.03619 0.90136 1.23314 0.92964 0.89374 1.01385 1.50400 1.32491 1.22756 1.09853 1.22137 0.99548 0.89260 0.94227 1.82044 1.20496 1.14158 0.88147 1.74747 1.03660 1.03047 1.25068 1.42462 1.04208 1.83669 1.05283 1.19127 0.94197 1.40829 0.83098 0.91172 1.24689 0.95931 1.02100 0.97336 1.69643 1.01522 1.53885 1.32481 0.86321 0.76873 0.77824 0.85472 1.21346 1.21813 1.21186 0.93132 0.88764 0.93117 0.86419 0.86843 0.86614 0.83970 0.91614 0.91033 0.74309 0.77979 0.89373 0.88602 0.88222 0.77829 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.93 9.69 -19.42 -0.19 -5.12 16 3 C 0.12 2.08 6.66 -39.22 -0.26 1.81 16 4 C -0.22 -3.29 9.04 -39.43 -0.36 -3.65 16 5 C -0.10 -1.41 10.04 -39.60 -0.40 -1.81 16 6 C -0.16 -2.71 10.04 -39.56 -0.40 -3.11 16 7 C -0.04 -0.83 9.32 -39.61 -0.37 -1.20 16 8 C -0.12 -2.20 5.07 -104.47 -0.53 -2.73 16 9 C 0.21 4.17 2.32 -69.08 -0.16 4.01 16 10 H 0.07 1.48 7.79 -51.92 -0.40 1.08 16 11 C 0.12 2.29 5.21 -4.04 -0.02 2.27 16 12 N -0.69 -12.90 5.38 -61.36 -0.33 -13.23 16 13 C 0.60 10.82 7.82 -12.48 -0.10 10.72 16 14 O -0.55 -10.72 16.86 5.28 0.09 -10.63 16 15 C -0.09 -1.51 6.99 -83.55 -0.58 -2.09 16 16 C 0.09 1.03 11.31 -16.83 -0.19 0.84 16 17 N -0.37 -4.08 4.03 -67.85 -0.27 -4.36 16 18 C 0.09 0.45 11.51 59.85 0.69 1.14 16 19 N -0.07 -1.05 13.78 60.35 0.83 -0.22 16 20 N -0.19 -3.39 12.04 32.85 0.40 -2.99 16 21 N -0.72 -16.84 3.17 -54.55 -0.17 -17.01 16 22 C -0.24 -6.40 9.92 -15.06 -0.15 -6.55 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 25 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 26 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.12 1.44 6.30 -52.49 -0.33 1.10 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.14 3.04 7.14 -52.49 -0.37 2.66 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.42 8.32 7.82 -40.82 -0.32 8.00 16 40 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.39 9.80 7.80 -40.82 -0.32 9.48 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -34.01 390.75 -5.88 -39.89 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -5.89 Total: 16.14 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.93 Total: 0.75 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: 1.17 Total: -64.17 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.10 Total: -15.75 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.01 -5.88 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198702802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.040 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds