Wall clock time and date at job start Wed Apr 1 2020 03:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99814 * 2 1 4 4 C 1.38753 * 120.05719 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02482 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.47035 * 219.99785 * 9 8 7 11 11 C 1.53008 * 109.47152 * 100.00257 * 9 8 7 12 12 N 1.46495 * 109.47000 * 184.99887 * 11 9 8 13 13 C 1.34772 * 120.00005 * 180.02562 * 12 11 9 14 14 O 1.21597 * 119.99765 * 359.97438 * 13 12 11 15 15 C 1.47519 * 120.00180 * 179.97438 * 13 12 11 16 16 C 1.36604 * 125.77100 * 179.70959 * 15 13 12 17 17 N 1.34817 * 106.83625 * 179.89490 * 16 15 13 18 18 C 1.46505 * 126.59025 * 180.10579 * 17 16 15 19 19 N 1.40210 * 106.81205 * 0.36269 * 17 16 15 20 20 N 1.28750 * 108.36754 * 359.76939 * 19 17 16 21 21 N 1.46493 * 109.47543 * 340.00084 * 9 8 7 22 22 C 1.36938 * 119.99930 * 275.00467 * 21 9 8 23 23 H 1.07998 * 120.00015 * 359.97438 * 22 21 9 24 24 C 1.38811 * 120.00033 * 179.97438 * 22 21 9 25 25 N 1.31616 * 120.00212 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99934 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47126 * 59.99928 * 26 24 22 28 28 H 1.48498 * 109.46905 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47136 * 300.00037 * 26 24 22 30 30 H 1.09000 * 109.47372 * 59.99966 * 1 2 3 31 31 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47156 * 299.99662 * 1 2 3 33 33 H 1.08002 * 120.02760 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 35 35 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.46770 * 304.99516 * 11 9 8 38 38 H 1.08993 * 109.46892 * 64.99732 * 11 9 8 39 39 H 0.97002 * 120.00437 * 359.97438 * 12 11 9 40 40 H 1.08000 * 126.58000 * 0.04439 * 16 15 13 41 41 H 1.08998 * 109.47430 * 270.27902 * 18 17 16 42 42 H 1.09003 * 109.47253 * 30.28039 * 18 17 16 43 43 H 1.08998 * 109.46870 * 150.27907 * 18 17 16 44 44 H 0.96999 * 120.00628 * 95.00066 * 21 9 8 45 45 H 0.97001 * 120.00246 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0005 9 6 4.2538 0.0223 -0.0017 10 1 3.7917 -0.7118 -0.6619 11 6 4.3240 -0.5420 1.4188 12 7 5.2201 -1.7007 1.4401 13 6 5.4363 -2.3643 2.5931 14 8 4.8878 -2.0009 3.6157 15 6 6.3382 -3.5314 2.6145 16 6 6.6448 -4.2836 3.7128 17 7 7.4944 -5.2464 3.3020 18 6 8.0945 -6.2939 4.1320 19 7 7.6977 -5.0489 1.9288 20 7 7.0019 -4.0310 1.5580 21 7 5.6072 0.3217 -0.4756 22 6 5.8739 0.3406 -1.8186 23 1 5.0865 0.1344 -2.5284 24 6 7.1562 0.6248 -2.2677 25 7 8.1157 0.8766 -1.4027 26 14 7.5201 0.6500 -4.0998 27 1 6.6734 1.6768 -4.7586 28 1 8.9527 0.9762 -4.3155 29 1 7.2235 -0.6837 -4.6817 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3203 0.0005 34 1 1.3339 4.5114 0.0046 35 1 3.7920 4.6381 -0.0014 36 1 5.1344 2.5754 -0.0019 37 1 4.7037 0.2235 2.0954 38 1 3.3276 -0.8474 1.7380 39 1 5.6573 -1.9909 0.6243 40 1 6.2754 -4.1367 4.7170 41 1 9.0377 -5.9352 4.5441 42 1 7.4150 -6.5464 4.9461 43 1 8.2773 -7.1795 3.5234 44 1 6.3146 0.5066 0.1619 45 1 9.0119 1.0749 -1.7165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198702802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:54 Heat of formation + Delta-G solvation = 48.054953 kcal Electronic energy + Delta-G solvation = -29903.872763 eV Core-core repulsion = 25730.880937 eV Total energy + Delta-G solvation = -4172.991826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.18451 -41.19491 -40.32407 -38.45877 -37.28599 -35.65691 -35.13564 -33.66338 -32.03386 -31.31512 -30.91239 -29.38558 -28.40031 -27.91911 -25.82465 -24.83284 -23.69134 -23.09253 -22.77489 -21.56058 -21.34082 -19.46392 -19.09946 -18.67162 -17.34274 -17.29590 -17.18302 -16.99131 -16.58739 -16.44132 -16.20336 -16.02212 -15.63090 -15.34068 -15.14228 -15.11541 -14.68456 -14.35010 -14.21538 -14.02145 -13.92808 -13.70838 -13.44168 -13.10021 -12.86404 -12.80342 -12.69371 -12.50351 -12.25761 -12.19860 -12.06439 -11.88891 -11.82638 -11.58135 -11.30630 -11.26212 -10.94562 -10.41174 -9.99006 -9.63747 -9.05768 -8.92870 -7.88968 -5.18538 0.17752 0.54528 0.62853 0.63995 1.22685 1.48986 1.50949 1.56352 2.18554 2.27508 2.52951 2.58666 2.96646 3.23189 3.44209 3.53263 3.78785 3.90455 3.98669 4.00429 4.11969 4.19047 4.33341 4.39416 4.41951 4.43232 4.48560 4.52564 4.61794 4.66559 4.69188 4.76235 4.79819 4.84693 4.96075 5.07445 5.24574 5.40605 5.48239 5.49717 5.57490 5.66497 5.87187 6.05945 6.30734 6.46293 6.61892 6.92301 7.14156 7.38778 8.05922 8.34148 9.32917 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007998 B = 0.003794 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.246626 B = 7377.604947 C = 9915.737330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.084 4.084 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.217 3.783 10 H 0.057 0.943 11 C 0.138 3.862 12 N -0.700 5.700 13 C 0.601 3.399 14 O -0.571 6.571 15 C -0.129 4.129 16 C 0.114 3.886 17 N -0.351 5.351 18 C 0.074 3.926 19 N -0.097 5.097 20 N -0.232 5.232 21 N -0.718 5.718 22 C -0.230 4.230 23 H 0.068 0.932 24 C -0.060 4.060 25 N -0.961 5.961 26 Si 0.961 3.039 27 H -0.281 1.281 28 H -0.297 1.297 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.245 0.755 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.376 0.624 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -8.420 12.945 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.190 4.190 7 C -0.085 4.085 8 C -0.146 4.146 9 C 0.108 3.892 10 H 0.075 0.925 11 C 0.014 3.986 12 N -0.349 5.349 13 C 0.386 3.614 14 O -0.451 6.451 15 C -0.269 4.269 16 C -0.045 4.045 17 N -0.136 5.136 18 C -0.064 4.064 19 N -0.077 5.077 20 N -0.105 5.105 21 N -0.358 5.358 22 C -0.362 4.362 23 H 0.086 0.914 24 C -0.253 4.253 25 N -0.612 5.612 26 Si 0.791 3.209 27 H -0.208 1.208 28 H -0.224 1.224 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.261 0.739 41 H 0.125 0.875 42 H 0.153 0.847 43 H 0.127 0.873 44 H 0.208 0.792 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.868 -8.955 12.225 18.648 hybrid contribution 0.591 0.570 -0.553 0.990 sum -10.277 -8.385 11.671 17.668 Atomic orbital electron populations 1.23309 0.76795 1.05204 1.02202 1.86069 1.23188 1.26794 1.88718 1.18984 0.91319 0.85212 0.97275 1.21442 1.00874 0.91679 1.09135 1.21214 0.93995 0.97980 0.97044 1.21279 0.94831 0.98108 1.04787 1.20918 1.00035 0.91788 0.95730 1.20193 0.91225 0.97222 1.05973 1.19179 0.85410 0.92064 0.92569 0.92544 1.21425 0.93621 0.86756 0.96829 1.45829 1.47155 1.30342 1.11558 1.16985 0.79884 0.81166 0.83317 1.90731 1.52220 1.68892 1.33277 1.21549 1.09293 1.04380 0.91665 1.23850 0.91279 0.87723 1.01656 1.50791 1.31100 1.22906 1.08782 1.22747 1.01138 0.87953 0.94554 1.81918 1.21018 1.14033 0.90779 1.74711 1.04877 1.04247 1.26670 1.42436 1.05479 1.83754 1.04095 1.19342 0.93897 1.38615 0.84331 0.91394 1.25330 0.96019 1.03186 1.00766 1.69792 1.01464 1.56015 1.33881 0.85397 0.76184 0.77831 0.81441 1.20785 1.22387 1.20788 0.91874 0.86856 0.91422 0.82853 0.82923 0.85087 0.87403 0.92699 0.90246 0.75206 0.73928 0.87549 0.84741 0.87341 0.79164 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -10.13 9.69 -92.39 -0.90 -11.03 16 3 C 0.12 3.91 6.66 22.51 0.15 4.06 16 4 C -0.21 -5.72 9.04 22.37 0.20 -5.52 16 5 C -0.08 -2.24 10.04 22.26 0.22 -2.02 16 6 C -0.17 -5.54 10.04 22.28 0.22 -5.32 16 7 C -0.07 -2.64 9.32 22.25 0.21 -2.43 16 8 C -0.14 -5.58 5.07 -19.77 -0.10 -5.68 16 9 C 0.22 9.16 2.32 44.25 0.10 9.26 16 10 H 0.06 2.51 7.79 -2.38 -0.02 2.49 16 11 C 0.14 5.36 5.21 86.38 0.45 5.81 16 12 N -0.70 -27.53 5.38 -466.29 -2.51 -30.04 16 13 C 0.60 22.33 7.82 86.69 0.68 23.01 16 14 O -0.57 -22.24 16.86 -4.02 -0.07 -22.30 16 15 C -0.13 -4.20 6.99 40.82 0.29 -3.92 16 16 C 0.11 2.49 11.31 83.85 0.95 3.44 16 17 N -0.35 -7.10 4.03 -368.57 -1.49 -8.59 16 18 C 0.07 0.50 11.51 127.77 1.47 1.97 16 19 N -0.10 -3.03 13.78 37.02 0.51 -2.52 16 20 N -0.23 -8.52 12.04 -49.99 -0.60 -9.12 16 21 N -0.72 -35.85 3.17 -326.50 -1.03 -36.88 16 22 C -0.23 -12.71 9.92 84.03 0.83 -11.87 16 23 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 25 N -0.96 -58.67 13.06 21.65 0.28 -58.39 16 26 Si 0.96 47.12 29.55 68.60 2.03 49.15 16 27 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 28 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 29 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 30 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 33 H 0.15 3.00 6.30 -2.91 -0.02 2.98 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.11 4.98 7.14 -2.91 -0.02 4.96 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 39 H 0.41 17.54 7.82 -92.71 -0.73 16.82 16 40 H 0.24 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.38 20.40 7.80 -92.71 -0.72 19.67 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -78.74 390.75 3.08 -75.66 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.40 Total: 44.76 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.25 Total: 9.30 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -4.84 Total: -145.54 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.96 Total: -33.33 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -78.74 3.08 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198702802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.718 kcal (2) G-P(sol) polarization free energy of solvation -78.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds