Wall clock time and date at job start Wed Apr 1 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00146 * 2 1 4 4 C 1.38760 * 120.05556 * 0.25817 * 3 2 1 5 5 C 1.38123 * 119.94353 * 180.27707 * 4 3 2 6 6 C 1.38281 * 120.05538 * 359.71949 * 5 4 3 7 7 C 1.38251 * 120.11573 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05003 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02603 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46721 * 145.00347 * 9 8 7 11 11 C 1.52995 * 109.47346 * 265.00661 * 9 8 7 12 12 N 1.46501 * 109.47321 * 175.00073 * 11 9 8 13 13 C 1.34770 * 120.00120 * 179.97438 * 12 11 9 14 14 O 1.21554 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.47807 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.40925 * 127.23221 * 179.97438 * 15 13 12 17 17 N 1.31138 * 105.77323 * 179.76872 * 16 15 13 18 18 N 1.28522 * 109.05907 * 0.22671 * 17 16 15 19 19 C 1.46497 * 124.44410 * 179.97438 * 18 17 16 20 20 N 1.28587 * 111.11004 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.46879 * 25.00646 * 9 8 7 22 22 C 1.36940 * 119.99774 * 84.99692 * 21 9 8 23 23 H 1.07990 * 120.00265 * 0.02562 * 22 21 9 24 24 C 1.38817 * 119.99677 * 179.97438 * 22 21 9 25 25 N 1.31616 * 119.99984 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00038 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47443 * 89.99669 * 26 24 22 28 28 H 1.48500 * 109.46929 * 209.99903 * 26 24 22 29 29 H 1.48498 * 109.47214 * 329.99441 * 26 24 22 30 30 H 1.08994 * 109.47298 * 59.99562 * 1 2 3 31 31 H 1.09003 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47253 * 299.99751 * 1 2 3 33 33 H 1.08006 * 120.02676 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.97049 * 179.74444 * 5 4 3 35 35 H 1.07995 * 119.94736 * 180.02562 * 6 5 4 36 36 H 1.07992 * 119.97656 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47187 * 54.99847 * 11 9 8 38 38 H 1.09007 * 109.46750 * 294.99753 * 11 9 8 39 39 H 0.97008 * 119.99545 * 0.02562 * 12 11 9 40 40 H 1.08002 * 127.11735 * 0.03765 * 16 15 13 41 41 H 1.09004 * 109.46928 * 90.02504 * 19 18 17 42 42 H 1.08997 * 109.47465 * 210.02409 * 19 18 17 43 43 H 1.09004 * 109.47014 * 330.03112 * 19 18 17 44 44 H 0.97000 * 119.99793 * 264.99946 * 21 9 8 45 45 H 0.96997 * 120.00211 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9209 3.6048 -0.0004 6 6 3.3019 3.6758 -0.0057 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0007 10 1 3.7493 -0.7404 0.5929 11 6 4.4205 -0.4772 -1.4372 12 7 5.3177 -1.6353 -1.4507 13 6 5.6122 -2.2461 -2.6154 14 8 5.1330 -1.8365 -3.6546 15 6 6.5170 -3.4148 -2.6288 16 6 6.9251 -4.1643 -3.7502 17 7 7.7249 -5.0940 -3.2857 18 7 7.8208 -4.9663 -2.0105 19 6 8.6306 -5.8320 -1.1496 20 7 7.1127 -3.9791 -1.5893 21 7 5.5717 0.2977 0.5766 22 6 5.7470 0.2552 1.9341 23 1 4.9139 0.0182 2.5790 24 6 6.9960 0.5158 2.4810 25 7 7.1645 0.4755 3.7857 26 14 8.4373 0.9250 1.3654 27 1 8.4984 2.3936 1.1541 28 1 9.6992 0.4628 1.9972 29 1 8.2601 0.2438 0.0578 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2128 2.3204 0.0100 34 1 1.3340 4.5114 -0.0004 35 1 3.7922 4.6380 -0.0098 36 1 5.1344 2.5751 -0.0095 37 1 4.8438 0.3176 -2.0513 38 1 3.4482 -0.7663 -1.8365 39 1 5.6993 -1.9628 -0.6211 40 1 6.6417 -4.0034 -4.7799 41 1 9.6347 -5.4175 -1.0592 42 1 8.1727 -5.8936 -0.1624 43 1 8.6871 -6.8289 -1.5869 44 1 6.3201 0.5102 -0.0027 45 1 8.0371 0.6579 4.1679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198932508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:36 Heat of formation + Delta-G solvation = 89.741213 kcal Electronic energy + Delta-G solvation = -30138.668179 eV Core-core repulsion = 25967.484005 eV Total energy + Delta-G solvation = -4171.184174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.67610 -40.02006 -39.18631 -37.27887 -35.97466 -33.89905 -33.71637 -32.68759 -31.95719 -30.16169 -29.75464 -28.57204 -27.57211 -26.96726 -24.50810 -23.13501 -22.57968 -22.12180 -21.60393 -20.22788 -20.07668 -18.12947 -17.85368 -17.40949 -17.05187 -16.79221 -15.99019 -15.84428 -15.45224 -15.17660 -15.00798 -14.83838 -14.40141 -14.07226 -14.00110 -13.64083 -13.30191 -13.17838 -13.06056 -12.92760 -12.83216 -12.46213 -12.31517 -11.94838 -11.75590 -11.45396 -11.12733 -11.05205 -10.92798 -10.85746 -10.79931 -10.56352 -10.48607 -10.18248 -10.04465 -9.63115 -9.50155 -9.08593 -8.76098 -8.39936 -7.77715 -7.40184 -5.82161 -3.20442 1.33994 1.75037 1.84190 1.91219 2.09561 3.31928 3.33332 3.36435 3.41204 3.41765 3.54576 3.91401 4.18082 4.53085 4.75617 4.80172 4.91369 5.00441 5.05294 5.07820 5.12808 5.23506 5.25820 5.33836 5.43635 5.46804 5.53356 5.59936 5.64883 5.78247 5.82425 5.87329 5.92474 6.14074 6.17336 6.34837 6.43574 6.51615 6.64693 6.72628 6.85577 7.08246 7.23475 7.70918 7.73770 7.93195 8.09546 8.35205 8.37169 9.12293 9.83774 10.01778 11.35673 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.004000 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.891126 B = 6998.592328 C = 9071.901707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.125 3.875 4 C -0.216 4.216 5 C -0.092 4.092 6 C -0.162 4.162 7 C -0.046 4.046 8 C -0.113 4.113 9 C 0.214 3.786 10 H 0.080 0.920 11 C 0.120 3.880 12 N -0.698 5.698 13 C 0.605 3.395 14 O -0.539 6.539 15 C -0.044 4.044 16 C 0.032 3.968 17 N -0.296 5.296 18 N -0.145 5.145 19 C 0.103 3.897 20 N -0.241 5.241 21 N -0.741 5.741 22 C -0.243 4.243 23 H 0.092 0.908 24 C 0.013 3.987 25 N -0.929 5.929 26 Si 0.876 3.124 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.417 0.583 40 H 0.207 0.793 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.363 0.637 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -6.186 -10.957 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.080 3.920 4 C -0.235 4.235 5 C -0.111 4.111 6 C -0.180 4.180 7 C -0.064 4.064 8 C -0.117 4.117 9 C 0.104 3.896 10 H 0.098 0.902 11 C -0.004 4.004 12 N -0.350 5.350 13 C 0.388 3.612 14 O -0.415 6.415 15 C -0.207 4.207 16 C -0.152 4.152 17 N -0.135 5.135 18 N -0.048 5.048 19 C -0.036 4.036 20 N -0.089 5.089 21 N -0.383 5.383 22 C -0.372 4.372 23 H 0.110 0.890 24 C -0.183 4.183 25 N -0.576 5.576 26 Si 0.706 3.294 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.202 1.202 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.224 0.776 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.197 0.803 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.802 -6.933 -10.591 13.925 hybrid contribution 0.599 1.014 -0.601 1.322 sum -5.203 -5.919 -11.192 13.688 Atomic orbital electron populations 1.22972 0.79253 1.03435 1.00911 1.86087 1.20591 1.27079 1.88848 1.18897 0.91848 0.83912 0.97349 1.21070 0.99315 0.92563 1.10542 1.20786 0.94662 0.96525 0.99081 1.21040 0.93803 0.98417 1.04773 1.20900 1.00599 0.90586 0.94360 1.20232 0.90054 0.97803 1.03614 1.19204 0.86766 0.92347 0.91329 0.90212 1.21691 0.93692 0.87146 0.97918 1.45866 1.48098 1.31340 1.09657 1.16614 0.79680 0.80694 0.84230 1.90782 1.53358 1.65171 1.32174 1.23153 1.05088 1.01906 0.90558 1.24809 0.96692 0.92250 1.01406 1.73976 1.20203 1.24327 0.95032 1.48056 1.32125 1.20998 1.03627 1.22263 0.94570 0.92946 0.93838 1.74517 1.06574 1.00742 1.27071 1.42851 1.05269 1.85017 1.05172 1.19016 0.96492 1.40738 0.80991 0.88994 1.24613 0.97011 1.01483 0.95228 1.69688 1.23226 1.55511 1.09182 0.86696 0.83728 0.78468 0.80530 1.21040 1.21785 1.20172 0.93063 0.88662 0.93001 0.86216 0.86649 0.86519 0.85046 0.91446 0.90522 0.74564 0.77601 0.88823 0.87331 0.87698 0.80328 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.77 9.64 -19.42 -0.19 -4.95 16 3 C 0.13 2.06 6.66 -39.21 -0.26 1.80 16 4 C -0.22 -3.11 9.04 -39.43 -0.36 -3.47 16 5 C -0.09 -1.31 10.04 -39.61 -0.40 -1.70 16 6 C -0.16 -2.53 10.04 -39.56 -0.40 -2.93 16 7 C -0.05 -0.83 9.32 -39.60 -0.37 -1.20 16 8 C -0.11 -2.05 5.04 -104.47 -0.53 -2.57 16 9 C 0.21 4.02 2.37 -69.08 -0.16 3.86 16 10 H 0.08 1.60 7.64 -51.93 -0.40 1.20 16 11 C 0.12 2.04 5.21 -4.04 -0.02 2.02 16 12 N -0.70 -11.96 5.38 -61.26 -0.33 -12.29 16 13 C 0.61 10.36 7.83 -12.35 -0.10 10.26 16 14 O -0.54 -10.09 16.95 5.32 0.09 -10.00 16 15 C -0.04 -0.69 7.21 -82.68 -0.60 -1.28 16 16 C 0.03 0.43 12.04 -16.83 -0.20 0.23 16 17 N -0.30 -3.90 12.01 30.90 0.37 -3.53 16 18 N -0.15 -1.86 4.35 -16.63 -0.07 -1.93 16 19 C 0.10 0.77 11.55 59.85 0.69 1.46 16 20 N -0.24 -3.69 11.84 33.42 0.40 -3.30 16 21 N -0.74 -16.14 3.10 -54.55 -0.17 -16.31 16 22 C -0.24 -6.39 10.40 -15.06 -0.16 -6.55 16 23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 24 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 25 N -0.93 -28.10 13.97 55.49 0.78 -27.33 16 26 Si 0.88 21.28 27.74 -169.99 -4.71 16.56 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 30 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 33 H 0.12 1.40 6.30 -52.48 -0.33 1.06 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.50 7.26 -52.49 -0.38 2.11 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.42 7.43 7.91 -40.82 -0.32 7.11 16 40 H 0.21 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.36 7.95 5.66 -40.82 -0.23 7.71 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -34.15 387.26 -5.82 -39.97 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.85 Total: 15.79 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.96 Total: 1.48 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: 0.97 Total: -64.68 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.10 Total: -14.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.15 -5.82 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198932508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.713 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds