Wall clock time and date at job start Wed Apr 1 2020 04:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00146 * 2 1 4 4 C 1.38760 * 120.05556 * 0.25817 * 3 2 1 5 5 C 1.38123 * 119.94353 * 180.27707 * 4 3 2 6 6 C 1.38281 * 120.05538 * 359.71949 * 5 4 3 7 7 C 1.38251 * 120.11573 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05003 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02603 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46721 * 145.00347 * 9 8 7 11 11 C 1.52995 * 109.47346 * 265.00661 * 9 8 7 12 12 N 1.46501 * 109.47321 * 175.00073 * 11 9 8 13 13 C 1.34770 * 120.00120 * 179.97438 * 12 11 9 14 14 O 1.21554 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.47807 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.40925 * 127.23221 * 179.97438 * 15 13 12 17 17 N 1.31138 * 105.77323 * 179.76872 * 16 15 13 18 18 N 1.28522 * 109.05907 * 0.22671 * 17 16 15 19 19 C 1.46497 * 124.44410 * 179.97438 * 18 17 16 20 20 N 1.28587 * 111.11004 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.46879 * 25.00646 * 9 8 7 22 22 C 1.36940 * 119.99774 * 84.99692 * 21 9 8 23 23 H 1.07990 * 120.00265 * 0.02562 * 22 21 9 24 24 C 1.38817 * 119.99677 * 179.97438 * 22 21 9 25 25 N 1.31616 * 119.99984 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00038 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47443 * 89.99669 * 26 24 22 28 28 H 1.48500 * 109.46929 * 209.99903 * 26 24 22 29 29 H 1.48498 * 109.47214 * 329.99441 * 26 24 22 30 30 H 1.08994 * 109.47298 * 59.99562 * 1 2 3 31 31 H 1.09003 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47253 * 299.99751 * 1 2 3 33 33 H 1.08006 * 120.02676 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.97049 * 179.74444 * 5 4 3 35 35 H 1.07995 * 119.94736 * 180.02562 * 6 5 4 36 36 H 1.07992 * 119.97656 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47187 * 54.99847 * 11 9 8 38 38 H 1.09007 * 109.46750 * 294.99753 * 11 9 8 39 39 H 0.97008 * 119.99545 * 0.02562 * 12 11 9 40 40 H 1.08002 * 127.11735 * 0.03765 * 16 15 13 41 41 H 1.09004 * 109.46928 * 90.02504 * 19 18 17 42 42 H 1.08997 * 109.47465 * 210.02409 * 19 18 17 43 43 H 1.09004 * 109.47014 * 330.03112 * 19 18 17 44 44 H 0.97000 * 119.99793 * 264.99946 * 21 9 8 45 45 H 0.96997 * 120.00211 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9209 3.6048 -0.0004 6 6 3.3019 3.6758 -0.0057 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0007 10 1 3.7493 -0.7404 0.5929 11 6 4.4205 -0.4772 -1.4372 12 7 5.3177 -1.6353 -1.4507 13 6 5.6122 -2.2461 -2.6154 14 8 5.1330 -1.8365 -3.6546 15 6 6.5170 -3.4148 -2.6288 16 6 6.9251 -4.1643 -3.7502 17 7 7.7249 -5.0940 -3.2857 18 7 7.8208 -4.9663 -2.0105 19 6 8.6306 -5.8320 -1.1496 20 7 7.1127 -3.9791 -1.5893 21 7 5.5717 0.2977 0.5766 22 6 5.7470 0.2552 1.9341 23 1 4.9139 0.0182 2.5790 24 6 6.9960 0.5158 2.4810 25 7 7.1645 0.4755 3.7857 26 14 8.4373 0.9250 1.3654 27 1 8.4984 2.3936 1.1541 28 1 9.6992 0.4628 1.9972 29 1 8.2601 0.2438 0.0578 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2128 2.3204 0.0100 34 1 1.3340 4.5114 -0.0004 35 1 3.7922 4.6380 -0.0098 36 1 5.1344 2.5751 -0.0095 37 1 4.8438 0.3176 -2.0513 38 1 3.4482 -0.7663 -1.8365 39 1 5.6993 -1.9628 -0.6211 40 1 6.6417 -4.0034 -4.7799 41 1 9.6347 -5.4175 -1.0592 42 1 8.1727 -5.8936 -0.1624 43 1 8.6871 -6.8289 -1.5869 44 1 6.3201 0.5102 -0.0027 45 1 8.0371 0.6579 4.1679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198932508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:35 Heat of formation + Delta-G solvation = 64.691448 kcal Electronic energy + Delta-G solvation = -30139.754418 eV Core-core repulsion = 25967.484005 eV Total energy + Delta-G solvation = -4172.270413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.72286 -41.25804 -40.51724 -38.54494 -37.41511 -35.35924 -34.80539 -34.02218 -33.49958 -31.82566 -30.95085 -29.74081 -28.66073 -27.94960 -25.90999 -24.83562 -23.88328 -23.12374 -22.81202 -21.63748 -21.40445 -19.93654 -19.04376 -18.67952 -18.05889 -17.93935 -17.31692 -17.21957 -16.60134 -16.47275 -16.30431 -16.12733 -15.79862 -15.53484 -15.19861 -15.05518 -14.65415 -14.54035 -14.25834 -14.13908 -13.85480 -13.67186 -13.52905 -13.07816 -13.03154 -12.93768 -12.74718 -12.51064 -12.35879 -12.12878 -12.01552 -11.89111 -11.82556 -11.70402 -11.57616 -11.43075 -11.02587 -10.54536 -10.13478 -9.70047 -9.37219 -8.97110 -7.99366 -5.34258 0.17681 0.50937 0.61522 0.85750 1.24253 1.38039 1.38455 1.45125 2.05938 2.12970 2.47681 2.50771 2.85804 2.93640 3.32600 3.44794 3.72156 3.91670 3.97430 4.06743 4.12198 4.26552 4.27356 4.29191 4.36788 4.39906 4.47123 4.47517 4.57926 4.62794 4.65057 4.71947 4.78665 4.88444 4.91929 5.01028 5.19184 5.30193 5.46637 5.50405 5.61983 5.75793 5.83396 6.01000 6.23087 6.36521 6.58961 6.94869 7.06481 7.07503 7.78990 8.00210 9.22091 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.004000 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.891126 B = 6998.592328 C = 9071.901707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.170 4.170 7 C -0.069 4.069 8 C -0.141 4.141 9 C 0.222 3.778 10 H 0.062 0.938 11 C 0.133 3.867 12 N -0.701 5.701 13 C 0.608 3.392 14 O -0.558 6.558 15 C -0.069 4.069 16 C 0.034 3.966 17 N -0.295 5.295 18 N -0.136 5.136 19 C 0.087 3.913 20 N -0.260 5.260 21 N -0.737 5.737 22 C -0.214 4.214 23 H 0.056 0.944 24 C -0.048 4.048 25 N -0.979 5.979 26 Si 0.941 3.059 27 H -0.281 1.281 28 H -0.298 1.298 29 H -0.258 1.258 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.413 0.587 40 H 0.229 0.771 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.132 0.868 44 H 0.365 0.635 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 -6.095 -12.718 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.188 4.188 7 C -0.088 4.088 8 C -0.145 4.145 9 C 0.113 3.887 10 H 0.080 0.920 11 C 0.008 3.992 12 N -0.351 5.351 13 C 0.392 3.608 14 O -0.436 6.436 15 C -0.230 4.230 16 C -0.149 4.149 17 N -0.136 5.136 18 N -0.041 5.041 19 C -0.050 4.050 20 N -0.110 5.110 21 N -0.379 5.379 22 C -0.345 4.345 23 H 0.074 0.926 24 C -0.240 4.240 25 N -0.630 5.630 26 Si 0.769 3.231 27 H -0.207 1.207 28 H -0.225 1.225 29 H -0.183 1.183 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.250 0.750 40 H 0.246 0.754 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.150 0.850 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.745 -6.851 -12.406 15.695 hybrid contribution 0.721 0.897 -0.027 1.151 sum -6.024 -5.953 -12.433 15.044 Atomic orbital electron populations 1.23304 0.76776 1.05228 1.02175 1.86060 1.23207 1.26833 1.88702 1.18998 0.91466 0.85195 0.97183 1.21458 1.00910 0.91790 1.08976 1.21225 0.94219 0.97910 0.96918 1.21296 0.94771 0.98290 1.04470 1.20884 1.00021 0.91703 0.96186 1.20074 0.91196 0.97056 1.06143 1.19148 0.85145 0.92640 0.91765 0.92009 1.21543 0.94037 0.87079 0.96493 1.45881 1.48175 1.31400 1.09666 1.16770 0.79482 0.80859 0.83682 1.90758 1.54268 1.65947 1.32604 1.22981 1.06107 1.02288 0.91656 1.25192 0.96117 0.91562 1.01996 1.73993 1.20137 1.24170 0.95261 1.48620 1.31156 1.20294 1.03993 1.22785 0.94664 0.93624 0.93917 1.74473 1.07327 1.01738 1.27476 1.42691 1.06778 1.85073 1.03398 1.18832 0.95070 1.38071 0.82525 0.92551 1.25241 0.99707 1.02675 0.96377 1.69853 1.23676 1.58172 1.11260 0.85631 0.79885 0.78280 0.79259 1.20733 1.22542 1.18316 0.91263 0.86839 0.92087 0.83010 0.82995 0.84708 0.86948 0.91537 0.89855 0.75028 0.75424 0.87275 0.86430 0.84952 0.80096 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.91 9.64 -92.41 -0.89 -10.80 16 3 C 0.12 3.76 6.66 22.51 0.15 3.91 16 4 C -0.21 -5.56 9.04 22.37 0.20 -5.36 16 5 C -0.08 -2.15 10.04 22.25 0.22 -1.92 16 6 C -0.17 -5.08 10.04 22.28 0.22 -4.85 16 7 C -0.07 -2.52 9.32 22.26 0.21 -2.31 16 8 C -0.14 -5.17 5.04 -19.77 -0.10 -5.27 16 9 C 0.22 8.57 2.37 44.25 0.10 8.68 16 10 H 0.06 2.59 7.64 -2.38 -0.02 2.57 16 11 C 0.13 4.56 5.21 86.38 0.45 5.01 16 12 N -0.70 -24.24 5.38 -466.02 -2.51 -26.75 16 13 C 0.61 20.76 7.83 86.78 0.68 21.44 16 14 O -0.56 -20.75 16.95 -3.89 -0.07 -20.81 16 15 C -0.07 -2.12 7.21 42.25 0.30 -1.82 16 16 C 0.03 0.87 12.04 85.46 1.03 1.90 16 17 N -0.30 -7.29 12.01 -56.16 -0.67 -7.96 16 18 N -0.14 -3.27 4.35 -206.54 -0.90 -4.17 16 19 C 0.09 1.13 11.55 127.77 1.48 2.60 16 20 N -0.26 -7.80 11.84 -48.16 -0.57 -8.37 16 21 N -0.74 -32.87 3.10 -326.50 -1.01 -33.88 16 22 C -0.21 -11.68 10.40 84.03 0.87 -10.80 16 23 H 0.06 3.45 8.06 -2.92 -0.02 3.42 16 24 C -0.05 -2.75 5.50 84.86 0.47 -2.28 16 25 N -0.98 -61.26 13.97 21.65 0.30 -60.95 16 26 Si 0.94 44.87 27.74 68.60 1.90 46.77 16 27 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.26 -11.40 6.52 99.48 0.65 -10.75 16 30 H 0.07 1.06 7.67 -2.39 -0.02 1.04 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 33 H 0.15 2.92 6.30 -2.91 -0.02 2.90 16 34 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.11 4.39 7.26 -2.91 -0.02 4.37 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.41 15.01 7.91 -92.70 -0.73 14.27 16 40 H 0.23 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.37 16.08 5.66 -92.71 -0.52 15.56 16 45 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -75.90 387.26 2.72 -73.18 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -0.27 Total: 43.34 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 7.41 Total: 10.40 kcal Atomic # 7 Polarization: -136.72 SS G_CDS: -5.36 Total: -142.08 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.96 Total: -31.61 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -75.90 2.72 -73.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198932508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.869 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds