Wall clock time and date at job start Wed Apr 1 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 117.00077 * 2 1 4 4 C 1.38754 * 120.05457 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94111 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05499 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11493 * 359.75584 * 6 5 4 8 8 C 1.38162 * 120.05406 * 0.49630 * 7 6 5 9 9 C 1.50707 * 120.02888 * 179.77387 * 8 7 6 10 10 H 1.08996 * 109.46934 * 219.73076 * 9 8 7 11 11 C 1.52995 * 109.47077 * 99.72853 * 9 8 7 12 12 N 1.46501 * 109.47321 * 185.00205 * 11 9 8 13 13 C 1.34770 * 120.00120 * 179.97438 * 12 11 9 14 14 O 1.21554 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.47807 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.40925 * 127.23221 * 179.97438 * 15 13 12 17 17 N 1.31138 * 105.77323 * 179.76872 * 16 15 13 18 18 N 1.28522 * 109.05907 * 0.22671 * 17 16 15 19 19 C 1.46497 * 124.44374 * 180.02562 * 18 17 16 20 20 N 1.28587 * 111.11004 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.46788 * 339.72773 * 9 8 7 22 22 C 1.36937 * 119.99916 * 274.99684 * 21 9 8 23 23 H 1.07994 * 120.00283 * 0.02562 * 22 21 9 24 24 C 1.38817 * 119.99863 * 180.02562 * 22 21 9 25 25 N 1.31624 * 120.00199 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00009 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47353 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47524 * 119.99838 * 26 24 22 29 29 H 1.48502 * 109.47163 * 239.99792 * 26 24 22 30 30 H 1.09005 * 109.46704 * 60.00181 * 1 2 3 31 31 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47180 * 300.00054 * 1 2 3 33 33 H 1.08001 * 120.02804 * 359.94879 * 4 3 2 34 34 H 1.08002 * 119.96632 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94189 * 180.02562 * 6 5 4 36 36 H 1.08003 * 119.97539 * 180.25630 * 7 6 5 37 37 H 1.08999 * 109.47187 * 64.99979 * 11 9 8 38 38 H 1.09007 * 109.46750 * 304.99885 * 11 9 8 39 39 H 0.97008 * 119.99545 * 0.02562 * 12 11 9 40 40 H 1.08002 * 127.11735 * 0.03765 * 16 15 13 41 41 H 1.09001 * 109.46928 * 89.97424 * 19 18 17 42 42 H 1.08998 * 109.47441 * 209.97511 * 19 18 17 43 43 H 1.09004 * 109.47065 * 329.97986 * 19 18 17 44 44 H 0.96999 * 120.00147 * 95.00570 * 21 9 8 45 45 H 0.97001 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0067 8 6 3.4312 1.2848 0.0009 9 6 4.2538 0.0220 0.0013 10 1 3.7927 -0.7121 -0.6593 11 6 4.3218 -0.5419 1.4220 12 7 5.2178 -1.7007 1.4451 13 6 5.4330 -2.3632 2.5988 14 8 4.8839 -1.9991 3.6203 15 6 6.3375 -3.5320 2.6221 16 6 6.6701 -4.3306 3.7345 17 7 7.4939 -5.2456 3.2829 18 7 7.6789 -5.0595 2.0248 19 6 8.5406 -5.8921 1.1819 20 7 7.0075 -4.0473 1.6027 21 7 5.6080 0.3214 -0.4706 22 6 5.8766 0.3398 -1.8133 23 1 5.0902 0.1342 -2.5242 24 6 7.1600 0.6229 -2.2604 25 7 8.1184 0.8741 -1.3940 26 14 7.5263 0.6489 -4.0919 27 1 6.2876 0.3366 -4.8491 28 1 8.0177 1.9956 -4.4795 29 1 8.5652 -0.3656 -4.4034 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.2128 2.3203 0.0001 34 1 1.3340 4.5113 0.0011 35 1 3.7923 4.6380 0.0024 36 1 5.1345 2.5751 0.0113 37 1 3.3248 -0.8471 1.7398 38 1 4.7005 0.2239 2.0990 39 1 5.6568 -1.9906 0.6301 40 1 6.3161 -4.2159 4.7484 41 1 7.9573 -6.7132 0.7652 42 1 8.9488 -5.2884 0.3714 43 1 9.3568 -6.2942 1.7822 44 1 6.3143 0.5063 0.1679 45 1 9.0151 1.0723 -1.7065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198932509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:39 Heat of formation + Delta-G solvation = 85.583429 kcal Electronic energy + Delta-G solvation = -30049.766165 eV Core-core repulsion = 25878.401696 eV Total energy + Delta-G solvation = -4171.364469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57094 -39.94601 -39.04956 -37.18955 -35.81300 -33.79669 -33.60714 -32.60509 -31.88801 -29.72625 -29.65575 -28.40062 -27.36330 -26.92329 -24.39562 -23.37974 -22.49517 -22.01808 -21.54052 -20.11137 -19.98973 -17.85976 -17.66395 -17.22502 -16.95047 -16.68539 -15.85662 -15.79220 -15.41176 -15.07265 -14.86032 -14.74445 -14.40002 -13.89718 -13.81876 -13.64090 -13.25338 -13.11978 -13.02426 -12.85180 -12.78809 -12.36360 -12.03440 -11.84430 -11.68264 -11.22875 -10.97882 -10.94437 -10.86360 -10.79646 -10.71819 -10.47707 -10.37868 -10.09122 -9.92120 -9.73929 -9.39821 -9.05207 -8.60094 -8.31519 -7.71424 -7.09574 -5.82960 -3.14164 1.45717 1.82443 1.90797 2.01221 2.19140 3.38966 3.45738 3.47065 3.47968 3.55286 3.58574 4.02086 4.26113 4.53336 4.84620 4.86651 5.01472 5.07416 5.14774 5.17675 5.24094 5.24899 5.29605 5.50703 5.53184 5.55369 5.60700 5.72117 5.75604 5.88118 5.97227 5.98779 6.03820 6.28517 6.34846 6.46858 6.53628 6.61958 6.74311 6.85788 6.94133 7.19658 7.37009 7.69626 7.77156 7.87988 8.20752 8.33376 8.51417 9.46434 9.96938 10.34235 11.38357 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007832 B = 0.004011 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.055080 B = 6978.696794 C = 9523.896546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.043 4.043 8 C -0.116 4.116 9 C 0.208 3.792 10 H 0.071 0.929 11 C 0.123 3.877 12 N -0.693 5.693 13 C 0.605 3.395 14 O -0.542 6.542 15 C -0.041 4.041 16 C 0.031 3.969 17 N -0.297 5.297 18 N -0.147 5.147 19 C 0.104 3.896 20 N -0.238 5.238 21 N -0.716 5.716 22 C -0.239 4.239 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.417 0.583 40 H 0.207 0.793 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.387 0.613 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.046 -7.029 5.511 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.238 4.238 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.061 4.061 8 C -0.120 4.120 9 C 0.097 3.903 10 H 0.088 0.912 11 C -0.001 4.001 12 N -0.344 5.344 13 C 0.387 3.613 14 O -0.418 6.418 15 C -0.205 4.205 16 C -0.153 4.153 17 N -0.137 5.137 18 N -0.049 5.049 19 C -0.035 4.035 20 N -0.087 5.087 21 N -0.357 5.357 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.223 0.777 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.222 0.778 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.522 -7.752 5.223 11.998 hybrid contribution -0.082 0.797 -0.856 1.173 sum -7.604 -6.955 4.367 11.192 Atomic orbital electron populations 1.22958 0.79411 1.03328 1.00858 1.86090 1.20456 1.27190 1.88930 1.18952 0.91961 0.83811 0.97651 1.21045 0.99189 0.92617 1.10948 1.20785 0.94726 0.96436 0.99360 1.21075 0.93703 0.98562 1.04879 1.21099 1.01347 0.90290 0.93411 1.20401 0.89897 0.98241 1.03456 1.19236 0.87139 0.91605 0.92292 0.91169 1.21627 0.93408 0.86978 0.98107 1.45828 1.47047 1.30321 1.11252 1.16605 0.80001 0.80608 0.84039 1.90774 1.50559 1.67367 1.33136 1.23163 1.04295 1.01922 0.91077 1.24797 0.97064 0.92038 1.01366 1.73960 1.19057 1.24831 0.95857 1.48035 1.32283 1.19841 1.04769 1.22236 0.93048 0.94031 0.94223 1.74532 1.06692 1.00604 1.26833 1.42488 1.04231 1.83662 1.05302 1.19230 0.94146 1.40482 0.83133 0.91053 1.24702 0.95972 1.02227 0.97343 1.69673 1.01501 1.54115 1.32252 0.86176 0.77794 0.77149 0.85401 1.20569 1.21923 1.21960 0.93135 0.88746 0.93067 0.86387 0.86812 0.86592 0.84006 0.90909 0.91492 0.74522 0.77665 0.88996 0.87328 0.87778 0.77836 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.84 9.68 -19.43 -0.19 -5.03 16 3 C 0.12 2.04 6.66 -39.22 -0.26 1.78 16 4 C -0.22 -3.23 9.04 -39.43 -0.36 -3.59 16 5 C -0.09 -1.38 10.04 -39.61 -0.40 -1.78 16 6 C -0.16 -2.66 10.04 -39.56 -0.40 -3.06 16 7 C -0.04 -0.81 9.32 -39.61 -0.37 -1.18 16 8 C -0.12 -2.16 5.06 -104.47 -0.53 -2.69 16 9 C 0.21 4.05 2.32 -69.08 -0.16 3.89 16 10 H 0.07 1.43 7.79 -51.93 -0.40 1.03 16 11 C 0.12 2.22 5.21 -4.04 -0.02 2.20 16 12 N -0.69 -12.51 5.39 -61.26 -0.33 -12.84 16 13 C 0.60 10.90 7.83 -12.35 -0.10 10.81 16 14 O -0.54 -10.68 16.95 5.32 0.09 -10.59 16 15 C -0.04 -0.68 7.21 -82.68 -0.60 -1.27 16 16 C 0.03 0.44 12.04 -16.83 -0.20 0.24 16 17 N -0.30 -4.11 12.01 30.90 0.37 -3.74 16 18 N -0.15 -1.97 4.35 -16.64 -0.07 -2.04 16 19 C 0.10 0.83 11.55 59.85 0.69 1.52 16 20 N -0.24 -3.82 11.84 33.42 0.40 -3.43 16 21 N -0.72 -16.32 3.17 -54.55 -0.17 -16.50 16 22 C -0.24 -6.14 9.92 -15.06 -0.15 -6.29 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.32 13.06 55.49 0.72 -25.60 16 26 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.14 2.97 7.14 -52.48 -0.37 2.59 16 37 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 39 H 0.42 7.87 7.91 -40.82 -0.32 7.54 16 40 H 0.21 2.34 8.06 -52.49 -0.42 1.91 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.39 9.53 7.80 -40.82 -0.32 9.22 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -32.34 390.26 -6.17 -38.51 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -5.90 Total: 17.16 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.95 Total: 1.64 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.92 Total: -64.14 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.10 Total: -15.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.34 -6.17 -38.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198932509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.097 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds