Wall clock time and date at job start Wed Apr 1 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 117.00077 * 2 1 4 4 C 1.38754 * 120.05457 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94111 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05499 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11493 * 359.75584 * 6 5 4 8 8 C 1.38162 * 120.05406 * 0.49630 * 7 6 5 9 9 C 1.50707 * 120.02888 * 179.77387 * 8 7 6 10 10 H 1.08996 * 109.46934 * 219.73076 * 9 8 7 11 11 C 1.52995 * 109.47077 * 99.72853 * 9 8 7 12 12 N 1.46501 * 109.47321 * 185.00205 * 11 9 8 13 13 C 1.34770 * 120.00120 * 179.97438 * 12 11 9 14 14 O 1.21554 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.47807 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.40925 * 127.23221 * 179.97438 * 15 13 12 17 17 N 1.31138 * 105.77323 * 179.76872 * 16 15 13 18 18 N 1.28522 * 109.05907 * 0.22671 * 17 16 15 19 19 C 1.46497 * 124.44374 * 180.02562 * 18 17 16 20 20 N 1.28587 * 111.11004 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.46788 * 339.72773 * 9 8 7 22 22 C 1.36937 * 119.99916 * 274.99684 * 21 9 8 23 23 H 1.07994 * 120.00283 * 0.02562 * 22 21 9 24 24 C 1.38817 * 119.99863 * 180.02562 * 22 21 9 25 25 N 1.31624 * 120.00199 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00009 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47353 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47524 * 119.99838 * 26 24 22 29 29 H 1.48502 * 109.47163 * 239.99792 * 26 24 22 30 30 H 1.09005 * 109.46704 * 60.00181 * 1 2 3 31 31 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47180 * 300.00054 * 1 2 3 33 33 H 1.08001 * 120.02804 * 359.94879 * 4 3 2 34 34 H 1.08002 * 119.96632 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94189 * 180.02562 * 6 5 4 36 36 H 1.08003 * 119.97539 * 180.25630 * 7 6 5 37 37 H 1.08999 * 109.47187 * 64.99979 * 11 9 8 38 38 H 1.09007 * 109.46750 * 304.99885 * 11 9 8 39 39 H 0.97008 * 119.99545 * 0.02562 * 12 11 9 40 40 H 1.08002 * 127.11735 * 0.03765 * 16 15 13 41 41 H 1.09001 * 109.46928 * 89.97424 * 19 18 17 42 42 H 1.08998 * 109.47441 * 209.97511 * 19 18 17 43 43 H 1.09004 * 109.47065 * 329.97986 * 19 18 17 44 44 H 0.96999 * 120.00147 * 95.00570 * 21 9 8 45 45 H 0.97001 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0067 8 6 3.4312 1.2848 0.0009 9 6 4.2538 0.0220 0.0013 10 1 3.7927 -0.7121 -0.6593 11 6 4.3218 -0.5419 1.4220 12 7 5.2178 -1.7007 1.4451 13 6 5.4330 -2.3632 2.5988 14 8 4.8839 -1.9991 3.6203 15 6 6.3375 -3.5320 2.6221 16 6 6.6701 -4.3306 3.7345 17 7 7.4939 -5.2456 3.2829 18 7 7.6789 -5.0595 2.0248 19 6 8.5406 -5.8921 1.1819 20 7 7.0075 -4.0473 1.6027 21 7 5.6080 0.3214 -0.4706 22 6 5.8766 0.3398 -1.8133 23 1 5.0902 0.1342 -2.5242 24 6 7.1600 0.6229 -2.2604 25 7 8.1184 0.8741 -1.3940 26 14 7.5263 0.6489 -4.0919 27 1 6.2876 0.3366 -4.8491 28 1 8.0177 1.9956 -4.4795 29 1 8.5652 -0.3656 -4.4034 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.2128 2.3203 0.0001 34 1 1.3340 4.5113 0.0011 35 1 3.7923 4.6380 0.0024 36 1 5.1345 2.5751 0.0113 37 1 3.3248 -0.8471 1.7398 38 1 4.7005 0.2239 2.0990 39 1 5.6568 -1.9906 0.6301 40 1 6.3161 -4.2159 4.7484 41 1 7.9573 -6.7132 0.7652 42 1 8.9488 -5.2884 0.3714 43 1 9.3568 -6.2942 1.7822 44 1 6.3143 0.5063 0.1679 45 1 9.0151 1.0723 -1.7065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198932509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:38 Heat of formation + Delta-G solvation = 62.627223 kcal Electronic energy + Delta-G solvation = -30050.761621 eV Core-core repulsion = 25878.401696 eV Total energy + Delta-G solvation = -4172.359925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.69026 -41.21854 -40.46893 -38.47229 -37.31127 -35.29775 -34.77818 -33.95822 -33.40106 -31.32217 -30.92298 -29.62106 -28.55803 -27.93453 -25.94643 -25.03838 -23.82204 -23.08963 -22.78027 -21.58613 -21.34164 -19.41980 -18.98771 -18.65558 -18.02520 -17.90967 -17.26117 -17.14760 -16.56807 -16.44110 -16.24100 -16.08023 -15.76478 -15.41955 -15.18142 -15.11737 -14.69395 -14.36340 -14.18565 -13.90148 -13.71679 -13.66254 -13.45570 -13.01904 -12.88970 -12.85134 -12.70431 -12.48516 -12.24488 -12.09555 -12.02383 -11.89293 -11.82974 -11.60491 -11.54161 -11.37329 -10.97773 -10.51207 -10.07331 -9.64295 -9.06551 -8.93499 -7.89805 -5.19510 0.21685 0.53975 0.63454 0.88150 1.27561 1.47843 1.49943 1.58296 2.10026 2.18728 2.52358 2.57593 2.89047 2.96697 3.43644 3.73367 3.79759 3.99085 4.00706 4.11931 4.18100 4.29183 4.30477 4.32696 4.41625 4.43139 4.48331 4.49514 4.61034 4.66008 4.67173 4.78139 4.80383 4.94177 4.95178 5.06474 5.23627 5.35752 5.47936 5.53621 5.57529 5.66209 5.86418 6.05174 6.29895 6.42389 6.61166 6.99351 7.10670 7.38046 8.04547 8.33286 9.32249 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007832 B = 0.004011 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.055080 B = 6978.696794 C = 9523.896546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.218 3.782 10 H 0.059 0.941 11 C 0.136 3.864 12 N -0.695 5.695 13 C 0.606 3.394 14 O -0.563 6.563 15 C -0.068 4.068 16 C 0.033 3.967 17 N -0.295 5.295 18 N -0.136 5.136 19 C 0.088 3.912 20 N -0.258 5.258 21 N -0.718 5.718 22 C -0.226 4.226 23 H 0.069 0.931 24 C -0.060 4.060 25 N -0.961 5.961 26 Si 0.961 3.039 27 H -0.272 1.272 28 H -0.298 1.298 29 H -0.294 1.294 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.413 0.587 40 H 0.229 0.771 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.376 0.624 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -7.448 5.248 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.084 4.084 8 C -0.146 4.146 9 C 0.108 3.892 10 H 0.077 0.923 11 C 0.012 3.988 12 N -0.345 5.345 13 C 0.390 3.610 14 O -0.441 6.441 15 C -0.229 4.229 16 C -0.150 4.150 17 N -0.136 5.136 18 N -0.041 5.041 19 C -0.049 4.049 20 N -0.108 5.108 21 N -0.357 5.357 22 C -0.358 4.358 23 H 0.087 0.913 24 C -0.253 4.253 25 N -0.611 5.611 26 Si 0.792 3.208 27 H -0.196 1.196 28 H -0.226 1.226 29 H -0.222 1.222 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.250 0.750 40 H 0.245 0.755 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.148 0.852 44 H 0.209 0.791 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.610 -8.188 4.960 13.565 hybrid contribution 0.442 0.853 -0.758 1.223 sum -9.168 -7.336 4.201 12.471 Atomic orbital electron populations 1.23306 0.76806 1.05210 1.02183 1.86064 1.23168 1.26781 1.88720 1.18991 0.91365 0.85191 0.97264 1.21444 1.00874 0.91719 1.09136 1.21209 0.94028 0.97970 0.97046 1.21276 0.94812 0.98154 1.04774 1.20916 1.00030 0.91769 0.95728 1.20183 0.91169 0.97239 1.05985 1.19177 0.85447 0.92076 0.92462 0.92283 1.21467 0.93643 0.86682 0.97011 1.45827 1.47072 1.30324 1.11255 1.16803 0.79838 0.80839 0.83473 1.90745 1.51557 1.68196 1.33587 1.22964 1.05333 1.02303 0.92308 1.25177 0.96630 0.91308 1.01882 1.73976 1.18929 1.24614 0.96059 1.48619 1.31357 1.19047 1.05074 1.22769 0.93590 0.94147 0.94395 1.74485 1.07362 1.01686 1.27248 1.42459 1.05408 1.83716 1.04150 1.19411 0.93798 1.38311 0.84275 0.91340 1.25318 0.96072 1.03283 1.00646 1.69812 1.01500 1.56169 1.33654 0.85260 0.77579 0.76470 0.81541 1.19633 1.22552 1.22153 0.91862 0.86836 0.91491 0.82917 0.83000 0.85114 0.87336 0.90176 0.92626 0.75033 0.75475 0.86568 0.86924 0.85240 0.79148 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.84 9.68 -92.43 -0.90 -10.74 16 3 C 0.12 3.80 6.66 22.51 0.15 3.95 16 4 C -0.21 -5.62 9.04 22.37 0.20 -5.42 16 5 C -0.08 -2.20 10.04 22.25 0.22 -1.98 16 6 C -0.17 -5.43 10.04 22.28 0.22 -5.20 16 7 C -0.07 -2.56 9.32 22.25 0.21 -2.35 16 8 C -0.14 -5.40 5.06 -19.77 -0.10 -5.50 16 9 C 0.22 8.81 2.32 44.25 0.10 8.92 16 10 H 0.06 2.50 7.79 -2.39 -0.02 2.48 16 11 C 0.14 5.12 5.21 86.38 0.45 5.57 16 12 N -0.69 -26.13 5.39 -466.02 -2.51 -28.64 16 13 C 0.61 22.49 7.83 86.78 0.68 23.17 16 14 O -0.56 -22.63 16.95 -3.89 -0.07 -22.69 16 15 C -0.07 -2.25 7.21 42.25 0.30 -1.95 16 16 C 0.03 0.91 12.04 85.46 1.03 1.94 16 17 N -0.30 -7.81 12.01 -56.16 -0.67 -8.48 16 18 N -0.14 -3.52 4.35 -206.54 -0.90 -4.42 16 19 C 0.09 1.25 11.55 127.77 1.48 2.73 16 20 N -0.26 -8.29 11.84 -48.16 -0.57 -8.86 16 21 N -0.72 -34.27 3.17 -326.51 -1.04 -35.31 16 22 C -0.23 -11.96 9.92 84.03 0.83 -11.13 16 23 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 24 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 25 N -0.96 -56.44 13.06 21.65 0.28 -56.16 16 26 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H 0.06 1.02 7.66 -2.38 -0.02 1.00 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 33 H 0.15 2.92 6.30 -2.91 -0.02 2.90 16 34 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.11 4.87 7.14 -2.91 -0.02 4.85 16 37 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 38 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.41 16.32 7.91 -92.70 -0.73 15.59 16 40 H 0.23 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.38 19.62 7.80 -92.71 -0.72 18.89 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -71.73 390.26 2.61 -69.12 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -0.41 Total: 47.55 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.36 Total: 11.38 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -5.41 Total: -141.86 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.96 Total: -33.43 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.73 2.61 -69.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198932509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.748 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds