Wall clock time and date at job start Wed Apr 1 2020 04:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 120.00213 * 2 1 4 4 C 1.52998 * 109.46933 * 89.99897 * 3 2 1 5 5 H 1.09005 * 112.74747 * 284.22800 * 4 3 2 6 6 C 1.53516 * 113.47629 * 153.38112 * 4 3 2 7 7 C 1.53510 * 83.57421 * 219.20967 * 6 4 3 8 8 N 1.47475 * 113.47736 * 55.00226 * 4 3 2 9 9 C 1.46911 * 111.00061 * 253.47084 * 8 4 3 10 10 C 1.50698 * 109.47199 * 190.00043 * 9 8 4 11 11 O 1.21295 * 119.99789 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99835 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99800 * 179.97438 * 12 10 9 14 14 H 1.08006 * 120.00082 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99990 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99789 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47314 * 60.00221 * 17 15 13 19 19 H 1.48503 * 109.47296 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47412 * 300.00191 * 17 15 13 21 21 C 1.34776 * 119.99477 * 180.02562 * 2 1 3 22 22 O 1.21615 * 119.99652 * 186.41311 * 21 2 1 23 23 C 1.47371 * 120.00514 * 6.41185 * 21 2 1 24 24 C 1.38124 * 126.47263 * 187.28899 * 23 21 2 25 25 N 1.34434 * 108.38998 * 179.86537 * 24 23 21 26 26 H 0.97000 * 125.38865 * 180.12568 * 25 24 23 27 27 C 1.37713 * 109.21882 * 0.40726 * 25 24 23 28 28 C 1.43194 * 125.83872 * 179.71300 * 27 25 24 29 29 N 6.46318 * 52.18054 * 190.78366 * 2 1 3 30 30 C 1.36351 * 108.31152 * 359.74851 * 27 25 24 31 31 H 1.09005 * 109.46945 * 96.02111 * 1 2 3 32 32 H 1.08994 * 109.47717 * 216.02475 * 1 2 3 33 33 H 1.09001 * 109.46818 * 336.02913 * 1 2 3 34 34 H 1.09000 * 109.47221 * 210.00134 * 3 2 1 35 35 H 1.09002 * 109.47212 * 329.99897 * 3 2 1 36 36 H 1.08997 * 114.16774 * 332.85722 * 6 4 3 37 37 H 1.08997 * 114.16986 * 105.55886 * 6 4 3 38 38 H 1.09002 * 113.47773 * 271.25204 * 7 6 4 39 39 H 1.09006 * 113.53153 * 140.79725 * 7 6 4 40 40 H 1.08999 * 109.46526 * 309.99455 * 9 8 4 41 41 H 1.08996 * 109.46879 * 69.99601 * 9 8 4 42 42 H 0.96997 * 119.99843 * 359.97438 * 12 10 9 43 43 H 0.97003 * 119.99828 * 180.02562 * 16 15 13 44 44 H 1.08006 * 125.80211 * 359.97438 * 24 23 21 45 45 H 1.08001 * 126.49156 * 179.97438 * 30 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5624 2.1175 1.9222 6 6 3.6943 2.5992 1.5995 7 6 3.8977 1.7906 2.8884 8 7 3.1443 0.6924 2.2550 9 6 2.2218 0.0664 3.2118 10 6 3.0034 -0.7811 4.1823 11 8 4.2102 -0.8566 4.0861 12 7 2.3615 -1.4551 5.1571 13 6 3.0725 -2.2265 6.0396 14 1 4.1471 -2.2938 5.9540 15 6 2.4108 -2.9209 7.0449 16 7 1.1035 -2.8386 7.1494 17 14 3.3797 -3.9714 8.2478 18 1 4.3500 -3.1184 8.9800 19 1 2.4472 -4.6037 9.2154 20 1 4.1120 -5.0279 7.5042 21 6 2.1388 -1.1673 -0.0005 22 8 3.3493 -1.1706 0.1171 23 6 1.4089 -2.4395 -0.1436 24 6 1.9397 -3.7088 -0.0220 25 7 0.9539 -4.6014 -0.2188 26 1 1.0547 -5.5657 -0.1875 27 6 -0.2203 -3.9302 -0.4781 28 6 -1.4903 -4.5351 -0.7454 29 7 -2.4980 -5.0154 -0.9553 30 6 0.0338 -2.5912 -0.4375 31 1 -0.3633 -0.1078 -1.0221 32 1 -0.3634 -0.8311 0.6043 33 1 -0.3633 0.9391 0.4175 34 1 3.1500 1.1383 -0.5138 35 1 1.6085 2.0284 -0.5139 36 1 4.4608 2.4329 0.8426 37 1 3.4707 3.6532 1.7644 38 1 3.3940 2.2199 3.7545 39 1 4.9407 1.5435 3.0872 40 1 1.6838 0.8414 3.7577 41 1 1.5102 -0.5598 2.6738 42 1 1.3965 -1.3943 5.2341 43 1 0.6416 -3.3231 7.8514 44 1 2.9710 -3.9442 0.1960 45 1 -0.6798 -1.7969 -0.5996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233782477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:53 Heat of formation + Delta-G solvation = 76.714809 kcal Electronic energy + Delta-G solvation = -30658.608294 eV Core-core repulsion = 26486.859253 eV Total energy + Delta-G solvation = -4171.749041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70942 -40.26960 -38.69776 -37.56788 -36.67412 -35.30785 -33.82495 -32.03453 -31.24561 -30.45887 -29.90626 -28.68376 -26.66178 -25.66794 -23.88453 -23.59915 -22.69400 -21.73903 -20.38313 -19.40671 -19.15128 -18.40427 -17.81217 -16.53702 -16.17645 -15.94750 -15.74839 -15.58802 -15.38735 -15.07253 -14.55308 -14.44833 -14.22308 -13.82331 -13.73821 -13.59520 -13.36639 -13.24808 -13.14955 -13.08215 -12.71703 -12.54646 -12.37331 -12.15489 -11.65541 -11.61436 -11.45785 -11.39273 -11.16819 -10.98870 -10.66198 -10.41486 -10.31656 -10.15256 -9.54819 -9.42520 -9.30493 -8.70909 -8.50492 -8.22852 -8.06652 -7.88596 -6.35922 -3.76016 1.18134 1.82606 2.04940 2.92350 3.13709 3.17837 3.22572 3.27478 3.32276 3.72149 3.78432 4.00547 4.15108 4.34158 4.65506 4.75619 4.93605 4.93863 4.98286 5.08962 5.14473 5.20795 5.29524 5.30033 5.40069 5.44628 5.59244 5.61940 5.64941 5.69379 5.80997 5.87399 5.96889 6.01655 6.22760 6.28242 6.37929 6.40987 6.46189 6.68233 6.86829 6.94810 7.19430 7.45418 7.60058 7.62215 8.12832 8.59055 8.69836 9.25132 9.62339 10.15935 10.82159 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007285 B = 0.004358 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3842.804684 B = 6423.930808 C = 9262.388727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.614 5.614 3 C 0.142 3.858 4 C 0.000 4.000 5 H 0.071 0.929 6 C -0.137 4.137 7 C 0.009 3.991 8 N -0.410 5.410 9 C 0.015 3.985 10 C 0.450 3.550 11 O -0.572 6.572 12 N -0.569 5.569 13 C -0.295 4.295 14 H 0.101 0.899 15 C 0.021 3.979 16 N -0.905 5.905 17 Si 0.928 3.072 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.586 3.414 22 O -0.502 6.502 23 C -0.223 4.223 24 C 0.119 3.881 25 N -0.522 5.522 26 H 0.426 0.574 27 C 0.040 3.960 28 C 0.281 3.719 29 N -0.410 5.410 30 C -0.094 4.094 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.390 0.610 43 H 0.270 0.730 44 H 0.193 0.807 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 6.070 -17.042 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.348 5.348 3 C 0.018 3.982 4 C -0.111 4.111 5 H 0.089 0.911 6 C -0.176 4.176 7 C -0.120 4.120 8 N -0.132 5.132 9 C -0.117 4.117 10 C 0.235 3.765 11 O -0.455 6.455 12 N -0.207 5.207 13 C -0.424 4.424 14 H 0.119 0.881 15 C -0.180 4.180 16 N -0.547 5.547 17 Si 0.755 3.245 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.374 3.626 22 O -0.375 6.375 23 C -0.232 4.232 24 C -0.023 4.023 25 N -0.116 5.116 26 H 0.265 0.735 27 C -0.072 4.072 28 C -0.034 4.034 29 N -0.087 5.087 30 C -0.122 4.122 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.223 0.777 43 H 0.080 0.920 44 H 0.210 0.790 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.406 4.397 -17.526 18.599 hybrid contribution -0.598 -0.289 1.539 1.676 sum -5.004 4.108 -15.987 17.249 Atomic orbital electron populations 1.22313 0.80606 1.03436 1.01214 1.47404 1.06087 1.05788 1.75525 1.21392 0.97603 0.84070 0.95100 1.23925 0.96726 0.93830 0.96612 0.91074 1.23176 0.97539 0.97584 0.99279 1.23584 1.02001 0.91298 0.95113 1.68975 1.14275 1.16499 1.13500 1.22427 0.95762 0.98656 0.94860 1.19699 0.88500 0.84666 0.83661 1.90531 1.14119 1.66677 1.74130 1.41851 1.09619 1.42357 1.26873 1.19627 0.93556 1.22304 1.06935 0.88132 1.25207 0.95712 0.98515 0.98530 1.69608 1.07107 1.43570 1.34428 0.85964 0.78901 0.79872 0.79745 1.19965 1.21066 1.20003 1.17196 0.86623 0.82174 0.76574 1.90878 1.13244 1.86456 1.46953 1.19630 0.93876 0.93512 1.16186 1.22487 0.94157 0.87604 0.98057 1.41647 1.06733 1.09828 1.53368 0.73528 1.15268 0.82121 0.90719 1.19078 1.24343 0.92039 0.93851 0.93154 1.81310 1.10644 1.06004 1.10777 1.21994 0.96016 0.93468 1.00748 0.92540 0.90057 0.91363 0.89368 0.90727 0.88846 0.91151 0.92265 0.89287 0.93586 0.89886 0.77724 0.92003 0.79003 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.64 59.85 0.52 1.04 16 2 N -0.61 -6.98 2.74 -182.87 -0.50 -7.48 16 3 C 0.14 1.53 5.53 -4.04 -0.02 1.50 16 4 C 0.00 0.00 3.37 -71.44 -0.24 -0.24 16 5 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 6 C -0.14 -1.61 8.00 -26.20 -0.21 -1.82 16 7 C 0.01 0.15 6.71 -7.55 -0.05 0.10 16 8 N -0.41 -7.11 4.38 -237.95 -1.04 -8.15 16 9 C 0.02 0.28 5.31 -4.97 -0.03 0.26 16 10 C 0.45 11.02 7.62 -10.99 -0.08 10.94 16 11 O -0.57 -16.12 15.34 5.54 0.09 -16.03 16 12 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 13 C -0.29 -8.34 9.68 -14.93 -0.14 -8.48 16 14 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.91 -24.87 13.05 55.50 0.72 -24.15 16 17 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.59 8.43 6.85 -12.54 -0.09 8.34 16 22 O -0.50 -9.32 15.63 5.26 0.08 -9.24 16 23 C -0.22 -2.67 5.93 -105.01 -0.62 -3.29 16 24 C 0.12 1.26 11.73 -16.45 -0.19 1.07 16 25 N -0.52 -4.37 6.02 -10.29 -0.06 -4.43 16 26 H 0.43 2.32 8.96 -40.82 -0.37 1.95 16 27 C 0.04 0.38 6.90 -83.98 -0.58 -0.20 16 28 C 0.28 2.97 15.88 -22.48 -0.36 2.61 16 29 N -0.41 -5.16 18.54 41.83 0.78 -4.39 16 30 C -0.09 -0.90 8.59 -39.05 -0.34 -1.23 16 31 H 0.06 0.33 7.28 -51.93 -0.38 -0.05 16 32 H 0.08 0.67 5.42 -51.93 -0.28 0.39 16 33 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 34 H 0.09 1.09 7.25 -51.93 -0.38 0.72 16 35 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 39 H 0.09 1.63 8.13 -51.93 -0.42 1.21 16 40 H 0.05 0.79 7.56 -51.93 -0.39 0.39 16 41 H 0.08 1.49 7.68 -51.93 -0.40 1.10 16 42 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.19 1.91 8.06 -52.48 -0.42 1.48 16 45 H 0.17 1.21 4.57 -52.49 -0.24 0.97 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -37.00 384.03 -7.35 -44.35 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.59 Total: 11.17 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -2.53 Total: 11.08 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.16 Total: -63.42 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.17 Total: -25.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.00 -7.35 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233782477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.062 kcal (2) G-P(sol) polarization free energy of solvation -36.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds