Wall clock time and date at job start Wed Apr 1 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47147 * 2 1 4 4 C 1.36940 * 119.99856 * 275.31433 * 3 2 1 5 5 H 1.08002 * 120.00140 * 37.57342 * 4 3 2 6 6 C 1.38808 * 120.00030 * 217.57939 * 4 3 2 7 7 N 1.31621 * 120.00163 * 21.42683 * 6 4 3 8 8 Si 1.86798 * 120.00302 * 201.43281 * 6 4 3 9 9 H 1.48501 * 109.46916 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47525 * 119.99416 * 8 6 4 11 11 H 1.48503 * 109.47123 * 239.99959 * 8 6 4 12 12 C 1.46500 * 120.00291 * 95.31071 * 3 2 1 13 13 C 1.52998 * 109.47040 * 270.00168 * 12 3 2 14 14 C 1.53001 * 109.47116 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47226 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99906 * 180.02562 * 15 14 13 17 17 O 1.21557 * 119.99993 * 359.97438 * 16 15 14 18 18 C 1.47883 * 119.99940 * 179.97438 * 16 15 14 19 19 C 1.38810 * 119.32472 * 179.97438 * 18 16 15 20 20 C 1.39864 * 118.37606 * 179.76108 * 19 18 16 21 21 C 1.41390 * 122.95950 * 179.70822 * 20 19 18 22 22 O 1.35223 * 120.99699 * 0.55461 * 21 20 19 23 23 N 1.32491 * 118.01139 * 180.27353 * 21 20 19 24 24 C 1.32355 * 121.49018 * 0.25302 * 23 21 20 25 25 N 1.31302 * 123.09430 * 0.02838 * 24 23 21 26 26 C 1.33696 * 120.36504 * 359.96999 * 25 24 23 27 27 C 1.40615 * 122.61404 * 180.02562 * 26 25 24 28 28 N 1.30909 * 120.15895 * 179.97438 * 27 26 25 29 29 H 1.08991 * 109.47269 * 60.00049 * 1 2 3 30 30 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46879 * 299.99826 * 1 2 3 32 32 H 1.09000 * 109.46655 * 239.99562 * 2 1 3 33 33 H 1.09001 * 109.46722 * 119.99968 * 2 1 3 34 34 H 0.96999 * 120.00254 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.47120 * 149.99828 * 12 3 2 36 36 H 1.08998 * 109.46969 * 29.99800 * 12 3 2 37 37 H 1.08994 * 109.47441 * 59.99857 * 13 12 3 38 38 H 1.08998 * 109.46938 * 299.99650 * 13 12 3 39 39 H 1.08994 * 109.47142 * 59.99601 * 14 13 12 40 40 H 1.09003 * 109.47186 * 299.99942 * 14 13 12 41 41 H 0.96994 * 120.00258 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.81536 * 0.04829 * 19 18 16 43 43 H 0.96700 * 113.99466 * 269.71599 * 22 21 20 44 44 H 1.08001 * 118.45709 * 179.97438 * 24 23 21 45 45 H 1.08007 * 119.92086 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7980 -0.6493 8 14 3.0992 4.2796 -2.6584 9 1 1.7774 4.2135 -3.3320 10 1 3.2549 5.6022 -2.0016 11 1 4.1764 4.0963 -3.6641 12 6 2.3733 2.0327 1.2632 13 6 1.1427 2.7382 1.8365 14 6 1.5135 3.4192 3.1555 15 7 0.3350 4.0943 3.7048 16 6 0.4250 4.7661 4.8697 17 8 1.4840 4.8114 5.4648 18 6 -0.7644 5.4480 5.4238 19 6 -0.6560 6.1354 6.6249 20 6 -1.7921 6.7773 7.1283 21 6 -1.7926 7.4990 8.3441 22 8 -0.6682 7.6133 9.0866 23 7 -2.9263 8.0647 8.7315 24 6 -4.0324 7.9596 8.0123 25 7 -4.0910 7.2979 6.8797 26 6 -3.0038 6.6883 6.3961 27 6 -3.0129 5.9678 5.1886 28 7 -1.9197 5.3897 4.7595 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0489 3.4031 -0.7833 35 1 3.1617 2.7640 1.0859 36 1 2.7256 1.2833 1.9721 37 1 0.3542 2.0069 2.0139 38 1 0.7904 3.4876 1.1277 39 1 2.3017 4.1506 2.9777 40 1 1.8661 2.6702 3.8646 41 1 -0.5099 4.0584 3.2297 42 1 0.2838 6.1775 7.1554 43 1 -0.5573 6.9118 9.7428 44 1 -4.9293 8.4400 8.3745 45 1 -3.9241 5.8913 4.6138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266106362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:11 Heat of formation + Delta-G solvation = 23.859825 kcal Electronic energy + Delta-G solvation = -28802.769329 eV Core-core repulsion = 24628.728324 eV Total energy + Delta-G solvation = -4174.041005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31573 -40.14026 -38.80153 -38.21991 -36.45913 -34.90756 -33.97720 -33.17948 -31.85796 -31.59610 -30.76378 -28.54582 -26.43775 -25.96724 -24.99992 -23.64924 -23.33617 -21.65331 -21.03985 -20.24440 -20.04411 -19.13993 -18.75998 -17.72692 -16.76926 -16.49216 -16.23336 -15.79500 -15.47860 -15.32306 -14.99221 -14.93809 -14.78354 -14.42925 -14.18417 -13.84765 -13.61971 -13.39918 -13.15840 -12.85231 -12.59430 -12.36084 -11.61333 -11.53075 -11.47094 -11.43798 -11.16643 -11.03122 -10.86177 -10.77206 -10.76138 -10.58041 -10.44287 -10.23255 -9.99956 -9.78764 -9.63604 -9.53497 -9.14268 -8.84505 -8.47096 -6.56043 -5.78131 -3.37231 -0.73471 -0.21360 0.92530 1.98478 2.49905 2.92297 2.99430 3.30666 3.35148 3.44372 3.45566 3.46424 3.47364 3.68047 3.93323 4.07271 4.46685 4.48580 4.50185 4.83023 5.07525 5.12346 5.25338 5.40072 5.45139 5.63532 5.64864 5.82204 5.98073 6.08235 6.16015 6.25912 6.35606 6.42418 6.44789 6.58451 6.60219 6.73011 6.76213 6.92370 7.04005 7.10575 7.18530 7.32767 7.58877 7.67903 7.83500 8.14796 8.53127 9.20371 9.82695 10.41455 11.21275 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002046 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.339594 B =13680.003861 C =13874.617514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.258 4.258 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.118 3.882 15 N -0.700 5.700 16 C 0.564 3.436 17 O -0.535 6.535 18 C 0.059 3.941 19 C -0.047 4.047 20 C -0.162 4.162 21 C 0.423 3.577 22 O -0.463 6.463 23 N -0.536 5.536 24 C 0.330 3.670 25 N -0.494 5.494 26 C 0.129 3.871 27 C 0.159 3.841 28 N -0.429 5.429 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.410 0.590 42 H 0.166 0.834 43 H 0.419 0.581 44 H 0.209 0.791 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.080 6.979 19.395 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.388 4.388 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.024 3.976 13 C -0.188 4.188 14 C -0.005 4.005 15 N -0.349 5.349 16 C 0.348 3.652 17 O -0.412 6.412 18 C -0.067 4.067 19 C -0.070 4.070 20 C -0.173 4.173 21 C 0.221 3.779 22 O -0.272 6.272 23 N -0.262 5.262 24 C 0.041 3.959 25 N -0.211 5.211 26 C -0.001 4.001 27 C -0.016 4.016 28 N -0.140 5.140 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.246 0.754 42 H 0.183 0.817 43 H 0.281 0.719 44 H 0.225 0.775 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.697 7.405 18.904 25.663 hybrid contribution 0.188 0.638 0.015 0.665 sum -15.509 8.043 18.919 25.752 Atomic orbital electron populations 1.22373 1.00148 0.98880 1.01156 1.20848 0.91680 0.87380 0.98709 1.43746 1.76031 1.08200 1.02488 1.19014 1.04597 1.21090 0.94120 0.92288 1.25187 0.94238 1.01335 0.98070 1.70007 1.03209 1.37242 1.42404 0.86374 0.77667 0.82341 0.81288 1.20095 1.21428 1.21652 1.20792 0.94382 0.96651 0.85788 1.22554 1.02470 0.99977 0.93754 1.21607 0.86777 0.96243 0.95893 1.46052 1.15286 1.51459 1.22141 1.17670 0.86366 0.79347 0.81832 1.90818 1.28375 1.61736 1.60258 1.21245 0.92772 0.99328 0.93359 1.22094 0.98544 0.91663 0.94748 1.19739 0.96573 1.02127 0.98827 1.19565 0.85217 0.85837 0.87269 1.84628 1.35106 1.54442 1.53051 1.68063 0.99384 1.21896 1.36827 1.24968 0.94728 0.90660 0.85527 1.68724 1.28930 1.09887 1.13514 1.20127 0.88357 0.95519 0.96144 1.23101 0.96879 0.90601 0.91002 1.67453 0.98331 1.16113 1.32084 0.93247 0.94655 0.93772 0.93894 0.94847 0.93574 0.88726 0.95638 0.92893 0.91563 0.91108 0.91602 0.75405 0.81680 0.71900 0.77484 0.79537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.21 37.16 0.38 -2.57 16 2 C 0.14 2.91 6.44 -4.04 -0.03 2.89 16 3 N -0.58 -14.09 2.43 -173.24 -0.42 -14.51 16 4 C -0.26 -6.89 9.45 -15.06 -0.14 -7.03 16 5 H 0.06 1.59 7.92 -52.49 -0.42 1.17 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.15 11.47 55.49 0.64 -24.51 16 8 Si 0.89 21.32 29.60 -169.99 -5.03 16.29 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.15 3.37 5.33 -4.04 -0.02 3.35 16 13 C -0.15 -2.69 5.65 -26.73 -0.15 -2.84 16 14 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 15 N -0.70 -10.16 5.54 -61.24 -0.34 -10.50 16 16 C 0.56 8.32 7.80 -12.31 -0.10 8.23 16 17 O -0.53 -9.28 16.29 5.32 0.09 -9.20 16 18 C 0.06 0.71 6.74 -83.03 -0.56 0.15 16 19 C -0.05 -0.48 9.24 -38.76 -0.36 -0.84 16 20 C -0.16 -1.51 5.76 -106.71 -0.61 -2.12 16 21 C 0.42 3.51 7.91 -16.07 -0.13 3.38 16 22 O -0.46 -2.96 13.04 -17.36 -0.23 -3.18 16 23 N -0.54 -4.44 10.42 -14.23 -0.15 -4.59 16 24 C 0.33 2.29 12.21 -92.09 -1.12 1.17 16 25 N -0.49 -4.17 10.46 -12.54 -0.13 -4.30 16 26 C 0.13 1.20 6.64 -84.78 -0.56 0.64 16 27 C 0.16 1.41 11.26 -17.05 -0.19 1.22 16 28 N -0.43 -4.67 9.43 -9.47 -0.09 -4.76 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.76 6.64 -51.92 -0.34 0.41 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 34 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.10 2.42 5.52 -51.93 -0.29 2.14 16 36 H 0.03 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.05 0.91 6.64 -51.93 -0.34 0.57 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.41 5.38 7.77 -40.82 -0.32 5.06 16 42 H 0.17 1.57 7.38 -52.49 -0.39 1.18 16 43 H 0.42 0.44 9.06 45.56 0.41 0.85 16 44 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.19 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -33.44 385.11 -8.58 -42.02 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.01 Total: 3.67 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.71 Total: 7.78 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.49 Total: -63.17 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.14 Total: -12.38 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.44 -8.58 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266106362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.876 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds