Wall clock time and date at job start Wed Apr 1 2020 03:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47147 * 2 1 4 4 C 1.36940 * 119.99856 * 275.31433 * 3 2 1 5 5 H 1.08002 * 120.00140 * 37.57342 * 4 3 2 6 6 C 1.38808 * 120.00030 * 217.57939 * 4 3 2 7 7 N 1.31621 * 120.00163 * 21.42683 * 6 4 3 8 8 Si 1.86798 * 120.00302 * 201.43281 * 6 4 3 9 9 H 1.48501 * 109.46916 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47525 * 119.99416 * 8 6 4 11 11 H 1.48503 * 109.47123 * 239.99959 * 8 6 4 12 12 C 1.46500 * 120.00291 * 95.31071 * 3 2 1 13 13 C 1.52998 * 109.47040 * 270.00168 * 12 3 2 14 14 C 1.53001 * 109.47116 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47226 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99906 * 180.02562 * 15 14 13 17 17 O 1.21557 * 119.99993 * 359.97438 * 16 15 14 18 18 C 1.47883 * 119.99940 * 179.97438 * 16 15 14 19 19 C 1.38810 * 119.32472 * 179.97438 * 18 16 15 20 20 C 1.39864 * 118.37606 * 179.76108 * 19 18 16 21 21 C 1.41390 * 122.95950 * 179.70822 * 20 19 18 22 22 O 1.35223 * 120.99699 * 0.55461 * 21 20 19 23 23 N 1.32491 * 118.01139 * 180.27353 * 21 20 19 24 24 C 1.32355 * 121.49018 * 0.25302 * 23 21 20 25 25 N 1.31302 * 123.09430 * 0.02838 * 24 23 21 26 26 C 1.33696 * 120.36504 * 359.96999 * 25 24 23 27 27 C 1.40615 * 122.61404 * 180.02562 * 26 25 24 28 28 N 1.30909 * 120.15895 * 179.97438 * 27 26 25 29 29 H 1.08991 * 109.47269 * 60.00049 * 1 2 3 30 30 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46879 * 299.99826 * 1 2 3 32 32 H 1.09000 * 109.46655 * 239.99562 * 2 1 3 33 33 H 1.09001 * 109.46722 * 119.99968 * 2 1 3 34 34 H 0.96999 * 120.00254 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.47120 * 149.99828 * 12 3 2 36 36 H 1.08998 * 109.46969 * 29.99800 * 12 3 2 37 37 H 1.08994 * 109.47441 * 59.99857 * 13 12 3 38 38 H 1.08998 * 109.46938 * 299.99650 * 13 12 3 39 39 H 1.08994 * 109.47142 * 59.99601 * 14 13 12 40 40 H 1.09003 * 109.47186 * 299.99942 * 14 13 12 41 41 H 0.96994 * 120.00258 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.81536 * 0.04829 * 19 18 16 43 43 H 0.96700 * 113.99466 * 269.71599 * 22 21 20 44 44 H 1.08001 * 118.45709 * 179.97438 * 24 23 21 45 45 H 1.08007 * 119.92086 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7980 -0.6493 8 14 3.0992 4.2796 -2.6584 9 1 1.7774 4.2135 -3.3320 10 1 3.2549 5.6022 -2.0016 11 1 4.1764 4.0963 -3.6641 12 6 2.3733 2.0327 1.2632 13 6 1.1427 2.7382 1.8365 14 6 1.5135 3.4192 3.1555 15 7 0.3350 4.0943 3.7048 16 6 0.4250 4.7661 4.8697 17 8 1.4840 4.8114 5.4648 18 6 -0.7644 5.4480 5.4238 19 6 -0.6560 6.1354 6.6249 20 6 -1.7921 6.7773 7.1283 21 6 -1.7926 7.4990 8.3441 22 8 -0.6682 7.6133 9.0866 23 7 -2.9263 8.0647 8.7315 24 6 -4.0324 7.9596 8.0123 25 7 -4.0910 7.2979 6.8797 26 6 -3.0038 6.6883 6.3961 27 6 -3.0129 5.9678 5.1886 28 7 -1.9197 5.3897 4.7595 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0489 3.4031 -0.7833 35 1 3.1617 2.7640 1.0859 36 1 2.7256 1.2833 1.9721 37 1 0.3542 2.0069 2.0139 38 1 0.7904 3.4876 1.1277 39 1 2.3017 4.1506 2.9777 40 1 1.8661 2.6702 3.8646 41 1 -0.5099 4.0584 3.2297 42 1 0.2838 6.1775 7.1554 43 1 -0.5573 6.9118 9.7428 44 1 -4.9293 8.4400 8.3745 45 1 -3.9241 5.8913 4.6138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266106362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:10 Heat of formation + Delta-G solvation = -1.879923 kcal Electronic energy + Delta-G solvation = -28803.885489 eV Core-core repulsion = 24628.728324 eV Total energy + Delta-G solvation = -4175.157165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.98014 -41.12059 -39.61979 -38.85175 -38.17092 -36.29973 -34.62020 -33.93521 -33.78808 -32.85062 -31.73541 -30.20511 -27.58985 -26.68310 -26.41600 -25.14977 -24.04165 -22.81885 -22.43438 -21.93828 -20.76771 -19.80772 -19.73253 -18.63613 -18.39494 -17.30671 -17.12249 -17.07674 -16.68949 -16.62294 -16.03788 -15.80786 -15.72126 -15.59572 -15.38077 -15.11199 -14.97414 -14.56816 -14.30464 -14.07773 -14.04840 -13.42014 -13.23682 -13.18162 -12.77569 -12.72457 -12.57891 -12.31625 -12.17242 -12.13303 -12.08586 -11.92564 -11.67512 -11.47532 -11.45196 -11.25962 -11.18582 -10.49468 -10.48052 -10.23864 -9.75029 -8.53414 -7.79820 -5.43662 -1.39667 -0.91931 0.24092 1.16611 1.44053 1.48339 1.57409 1.88678 1.96911 2.08331 2.51466 2.67948 2.70865 2.83129 2.93580 3.18330 3.25936 3.38142 3.67484 3.70064 3.92852 4.15923 4.18038 4.23997 4.35833 4.45252 4.46832 4.55691 4.74664 4.78027 4.90427 4.92026 4.97408 4.99814 5.05174 5.17518 5.33263 5.35663 5.47334 5.53147 5.62387 5.71519 5.86060 6.20586 6.29268 6.49835 6.51554 6.73719 7.01043 7.20432 7.90393 8.42563 9.14825 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002046 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.339594 B =13680.003861 C =13874.617514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.260 4.260 5 H 0.055 0.945 6 C -0.037 4.037 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.291 1.291 11 H -0.292 1.292 12 C 0.151 3.849 13 C -0.124 4.124 14 C 0.131 3.869 15 N -0.696 5.696 16 C 0.565 3.435 17 O -0.568 6.568 18 C 0.036 3.964 19 C -0.036 4.036 20 C -0.174 4.174 21 C 0.430 3.570 22 O -0.469 6.469 23 N -0.547 5.547 24 C 0.337 3.663 25 N -0.504 5.504 26 C 0.129 3.871 27 C 0.164 3.836 28 N -0.441 5.441 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.250 0.750 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.418 0.582 42 H 0.168 0.832 43 H 0.440 0.560 44 H 0.246 0.754 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.823 7.567 20.584 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.391 4.391 5 H 0.072 0.928 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.218 1.218 11 H -0.219 1.219 12 C 0.024 3.976 13 C -0.164 4.164 14 C 0.007 3.993 15 N -0.346 5.346 16 C 0.350 3.650 17 O -0.448 6.448 18 C -0.089 4.089 19 C -0.060 4.060 20 C -0.185 4.185 21 C 0.229 3.771 22 O -0.282 6.282 23 N -0.273 5.273 24 C 0.050 3.950 25 N -0.221 5.221 26 C -0.002 4.002 27 C -0.012 4.012 28 N -0.152 5.152 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.256 0.744 42 H 0.185 0.815 43 H 0.307 0.693 44 H 0.262 0.738 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -18.469 7.967 20.116 28.447 hybrid contribution 0.960 0.464 -0.213 1.087 sum -17.509 8.430 19.903 27.817 Atomic orbital electron populations 1.22176 0.97319 1.00762 1.00821 1.20999 0.93789 0.85674 0.98669 1.43993 1.76423 1.09590 1.02278 1.19195 1.03983 1.21103 0.94812 0.92774 1.25830 0.94086 1.03338 1.00140 1.70130 1.03794 1.38055 1.44179 0.85458 0.77731 0.79645 0.79121 1.19109 1.21787 1.21902 1.20695 0.95140 0.96164 0.85578 1.22184 1.00811 0.99553 0.93848 1.21277 0.87065 0.95787 0.95199 1.45881 1.14873 1.51447 1.22361 1.18038 0.86913 0.78727 0.81273 1.90789 1.29935 1.62948 1.61095 1.20799 0.92414 1.01178 0.94489 1.22084 0.99012 0.90860 0.93999 1.19812 0.96372 1.02798 0.99560 1.19636 0.85611 0.84900 0.86973 1.84582 1.34430 1.55573 1.53601 1.68208 0.99678 1.22251 1.37167 1.25787 0.95452 0.89194 0.84577 1.68818 1.28387 1.10614 1.14291 1.20323 0.88597 0.95136 0.96162 1.23534 0.96977 0.89626 0.91039 1.67390 0.98453 1.17027 1.32371 0.94552 0.91647 0.93050 0.95262 0.93597 0.94028 0.92178 0.95121 0.91154 0.93076 0.93137 0.91281 0.74449 0.81486 0.69293 0.73826 0.76870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.21 71.98 0.73 -4.32 16 2 C 0.13 5.46 6.44 86.38 0.56 6.02 16 3 N -0.60 -29.12 2.43 -702.01 -1.71 -30.83 16 4 C -0.26 -14.01 9.45 84.03 0.79 -13.21 16 5 H 0.05 2.92 7.92 -2.91 -0.02 2.90 16 6 C -0.04 -2.02 4.95 84.86 0.42 -1.60 16 7 N -0.92 -53.48 11.47 21.65 0.25 -53.23 16 8 Si 0.95 44.52 29.60 68.60 2.03 46.55 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 C 0.15 6.84 5.33 86.38 0.46 7.30 16 13 C -0.12 -4.51 5.65 30.59 0.17 -4.34 16 14 C 0.13 4.37 5.67 86.38 0.49 4.86 16 15 N -0.70 -20.20 5.54 -465.93 -2.58 -22.78 16 16 C 0.56 16.83 7.80 86.80 0.68 17.51 16 17 O -0.57 -20.19 16.29 -3.90 -0.06 -20.25 16 18 C 0.04 0.86 6.74 41.60 0.28 1.15 16 19 C -0.04 -0.72 9.24 22.80 0.21 -0.51 16 20 C -0.17 -3.01 5.76 -21.21 -0.12 -3.13 16 21 C 0.43 6.35 7.91 85.37 0.67 7.03 16 22 O -0.47 -5.20 13.04 -85.05 -1.11 -6.31 16 23 N -0.55 -7.74 10.42 -311.94 -3.25 -10.99 16 24 C 0.34 3.71 12.21 180.86 2.21 5.92 16 25 N -0.50 -7.21 10.46 -193.58 -2.02 -9.24 16 26 C 0.13 2.16 6.64 40.33 0.27 2.42 16 27 C 0.16 2.61 11.26 85.41 0.96 3.57 16 28 N -0.44 -9.17 9.43 -183.88 -1.73 -10.91 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.63 6.64 -2.38 -0.02 1.61 16 32 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.05 1.73 7.83 -2.39 -0.02 1.72 16 34 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.06 3.19 5.52 -2.39 -0.01 3.18 16 36 H 0.03 1.32 7.86 -2.39 -0.02 1.30 16 37 H 0.07 2.32 6.64 -2.39 -0.02 2.30 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.42 10.73 7.77 -92.71 -0.72 10.01 16 42 H 0.17 3.15 7.38 -2.91 -0.02 3.13 16 43 H 0.44 0.14 9.06 -74.06 -0.67 -0.53 16 44 H 0.25 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -72.76 385.11 -1.74 -74.50 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.33 Total: 14.83 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 8.79 Total: 28.66 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -11.05 Total: -137.97 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.17 Total: -26.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -72.76 -1.74 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266106362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.620 kcal (2) G-P(sol) polarization free energy of solvation -72.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds