Wall clock time and date at job start Wed Apr 1 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28868 * 125.95603 * 2 1 4 4 C 1.30930 * 109.00827 * 180.28577 * 3 2 1 5 5 N 1.32960 * 108.46979 * 359.72635 * 4 3 2 6 6 C 1.32140 * 107.31943 * 359.97438 * 5 4 3 7 7 C 1.47770 * 126.44804 * 180.02562 * 6 5 4 8 8 O 1.21559 * 120.00540 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99957 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.54412 * 129.01250 * 180.02562 * 10 9 7 12 12 C 1.54419 * 78.89086 * 180.64334 * 11 10 9 13 13 C 1.50703 * 129.01419 * 180.64405 * 12 11 10 14 14 O 1.21281 * 119.99538 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99988 * 180.02562 * 13 12 11 16 16 C 1.47584 * 134.49063 * 180.02562 * 15 13 12 17 17 C 1.53947 * 86.11565 * 204.63541 * 16 15 13 18 18 C 1.50699 * 113.73968 * 222.04272 * 17 16 15 19 19 H 1.07998 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00043 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00162 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46863 * 89.99320 * 22 20 18 24 24 H 1.48496 * 109.47186 * 209.99414 * 22 20 18 25 25 H 1.48506 * 109.46767 * 329.99535 * 22 20 18 26 26 C 1.47577 * 134.49641 * 359.97438 * 15 13 12 27 27 C 1.54891 * 84.49409 * 43.15382 * 12 11 10 28 28 C 1.54885 * 84.49103 * 318.13307 * 12 11 10 29 29 H 1.08994 * 109.47265 * 270.17860 * 1 2 3 30 30 H 1.08999 * 109.47107 * 30.18333 * 1 2 3 31 31 H 1.08998 * 109.47269 * 150.17781 * 1 2 3 32 32 H 1.07993 * 125.76419 * 179.69914 * 4 3 2 33 33 H 0.97004 * 119.99616 * 0.02562 * 9 7 6 34 34 H 1.08992 * 114.93459 * 68.15798 * 11 10 9 35 35 H 1.08998 * 114.98218 * 293.12337 * 11 10 9 36 36 H 1.09001 * 113.76908 * 90.33461 * 16 15 13 37 37 H 1.08997 * 113.76763 * 318.93723 * 16 15 13 38 38 H 1.08997 * 113.73914 * 90.73986 * 17 16 15 39 39 H 0.97000 * 120.00154 * 180.02562 * 21 20 18 40 40 H 1.08995 * 113.76947 * 41.05826 * 26 15 13 41 41 H 1.09005 * 113.76708 * 269.66738 * 26 15 13 42 42 H 1.09001 * 114.98080 * 69.39259 * 27 12 11 43 43 H 1.09003 * 114.97457 * 204.56822 * 27 12 11 44 44 H 1.09008 * 114.97367 * 155.43371 * 28 12 11 45 45 H 1.08998 * 114.98354 * 290.60293 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6615 -0.0062 5 7 3.5094 -0.6676 -0.0042 6 6 2.2588 -1.0944 0.0039 7 6 1.8119 -2.5029 0.0094 8 8 0.6246 -2.7639 0.0162 9 7 2.7206 -3.4982 0.0067 10 6 2.2776 -4.8946 0.0116 11 6 3.1273 -6.1840 0.0104 12 6 1.6984 -6.7693 0.0011 13 6 1.2643 -8.2125 0.0062 14 8 2.0955 -9.0956 0.0188 15 7 -0.0474 -8.5216 -0.0043 16 6 -0.8126 -9.7836 -0.0031 17 6 -1.9461 -8.9750 -0.6598 18 6 -3.3138 -9.2924 -0.1123 19 1 -3.4248 -10.0292 0.6695 20 6 -4.4232 -8.6414 -0.6087 21 7 -5.6167 -8.9181 -0.1306 22 14 -4.2311 -7.3666 -1.9605 23 1 -4.3351 -8.0300 -3.2850 24 1 -5.3012 -6.3450 -1.8331 25 1 -2.9040 -6.7113 -1.8379 26 6 -1.2955 -7.7343 -0.0208 27 6 1.4146 -5.6678 -1.0503 28 6 1.3958 -5.6548 1.0332 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8915 -0.5111 32 1 4.3332 1.3157 -0.0123 33 1 3.6680 -3.2900 0.0016 34 1 3.6913 -6.3634 0.9256 35 1 3.7004 -6.3567 -0.9005 36 1 -1.0550 -10.1494 0.9947 37 1 -0.3910 -10.5536 -0.6491 38 1 -1.9123 -8.9769 -1.7492 39 1 -6.3973 -8.4604 -0.4801 40 1 -1.2596 -6.8677 -0.6808 41 1 -1.6796 -7.4989 0.9718 42 1 1.9027 -5.8144 -2.0138 43 1 0.3710 -5.3624 -1.1266 44 1 0.3510 -5.3485 1.0868 45 1 1.8662 -5.7893 2.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269761121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:37 Heat of formation + Delta-G solvation = 169.975493 kcal Electronic energy + Delta-G solvation = -29866.206898 eV Core-core repulsion = 25698.501944 eV Total energy + Delta-G solvation = -4167.704954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.89285 -42.27782 -39.59665 -39.06112 -36.99545 -35.25123 -34.04295 -32.65317 -32.17369 -29.78252 -28.17627 -26.48247 -25.95060 -25.86688 -25.30998 -25.09576 -23.58132 -22.75490 -21.20219 -20.09329 -19.15775 -18.49061 -18.04834 -17.27524 -17.22365 -17.04542 -16.88724 -15.94790 -15.45960 -15.17606 -14.97587 -14.75523 -14.51763 -14.30175 -14.09164 -13.92926 -13.65932 -13.47458 -13.35142 -12.85158 -12.50255 -12.26671 -12.09775 -11.91829 -11.71961 -11.52405 -11.33329 -10.96495 -10.87404 -10.85195 -10.79611 -10.73491 -10.64643 -10.35298 -10.14302 -10.02549 -9.93928 -9.43635 -9.42865 -9.17608 -8.68737 -8.09157 -6.22632 -4.25405 0.62636 1.60146 2.00358 2.43478 2.69105 2.77182 3.19658 3.23549 3.28823 3.31996 3.52772 3.91899 4.00952 4.14945 4.18609 4.21440 4.29060 4.41036 4.50690 4.69072 4.75718 4.80349 5.02882 5.11036 5.39414 5.45217 5.49027 5.60737 5.73169 5.74403 5.76869 5.78887 5.82284 5.85393 5.89165 5.94580 6.08398 6.17087 6.18839 6.33808 6.37103 6.53032 6.86382 7.11884 7.49048 7.52129 7.66195 8.22571 8.35223 8.56546 8.81091 9.38244 10.89409 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002944 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.953769 B = 9508.674823 C =11517.881807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.257 5.257 3 N -0.302 5.302 4 C 0.163 3.837 5 N -0.475 5.475 6 C 0.162 3.838 7 C 0.612 3.388 8 O -0.511 6.511 9 N -0.646 5.646 10 C 0.089 3.911 11 C -0.078 4.078 12 C -0.142 4.142 13 C 0.591 3.409 14 O -0.553 6.553 15 N -0.632 5.632 16 C 0.119 3.881 17 C -0.006 4.006 18 C -0.515 4.515 19 H 0.080 0.920 20 C 0.077 3.923 21 N -0.892 5.892 22 Si 0.873 3.127 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.258 1.258 26 C 0.088 3.912 27 C -0.100 4.100 28 C -0.095 4.095 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.225 0.775 33 H 0.420 0.580 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.266 0.734 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.347 18.248 -0.127 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.053 5.053 3 N -0.140 5.140 4 C -0.137 4.137 5 N -0.203 5.203 6 C -0.113 4.113 7 C 0.394 3.606 8 O -0.384 6.384 9 N -0.295 5.295 10 C 0.000 4.000 11 C -0.116 4.116 12 C -0.146 4.146 13 C 0.378 3.622 14 O -0.432 6.432 15 N -0.365 5.365 16 C -0.002 4.002 17 C -0.026 4.026 18 C -0.553 4.553 19 H 0.098 0.902 20 C -0.127 4.127 21 N -0.529 5.529 22 Si 0.700 3.300 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.183 1.183 26 C -0.034 4.034 27 C -0.140 4.140 28 C -0.134 4.134 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.242 0.758 33 H 0.258 0.742 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.955 18.137 -0.124 24.156 hybrid contribution 0.310 1.043 -0.621 1.253 sum 16.264 19.180 -0.745 25.159 Atomic orbital electron populations 1.22587 0.71063 1.06827 1.05785 1.47102 1.09625 1.02494 1.46059 1.74256 1.04319 1.13618 1.21781 1.25967 0.94270 0.90398 1.03022 1.71195 1.18212 1.11672 1.19217 1.24007 0.86996 0.92064 1.08279 1.16340 0.85663 0.81370 0.77226 1.90871 1.15513 1.82992 1.48987 1.44155 1.10089 1.02359 1.72930 1.23337 0.97872 0.79771 0.98974 1.23968 0.94799 0.89504 1.03362 1.23224 0.98653 0.92351 1.00369 1.17948 0.81262 0.86484 0.76475 1.90666 1.51558 1.48771 1.52253 1.50266 1.03347 1.12608 1.70235 1.23330 0.88550 0.87325 1.01013 1.20931 0.94463 0.90848 0.96366 1.20817 0.87958 1.24446 1.22069 0.90218 1.25006 0.95037 0.96432 0.96191 1.69892 0.98426 1.42147 1.42391 0.86940 0.78614 0.81798 0.82670 1.20178 1.21249 1.18278 1.24149 0.79791 0.97989 1.01503 1.24877 1.01094 0.91641 0.96350 1.24379 1.01043 0.91416 0.96583 0.88680 0.88138 0.86314 0.75849 0.74213 0.89601 0.89563 0.89883 0.91444 0.92427 0.92368 0.91776 0.89543 0.90099 0.89149 0.88963 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.85 59.84 0.65 1.19 16 2 N -0.26 -2.52 3.74 -65.63 -0.25 -2.76 16 3 N -0.30 -2.95 12.07 29.27 0.35 -2.60 16 4 C 0.16 1.38 13.03 -91.88 -1.20 0.18 16 5 N -0.48 -4.70 11.09 -12.46 -0.14 -4.84 16 6 C 0.16 1.70 7.83 -155.27 -1.22 0.49 16 7 C 0.61 6.84 7.83 -12.36 -0.10 6.74 16 8 O -0.51 -6.75 14.61 5.31 0.08 -6.67 16 9 N -0.65 -6.31 5.71 -63.66 -0.36 -6.68 16 10 C 0.09 0.99 3.92 -147.16 -0.58 0.41 16 11 C -0.08 -0.87 7.78 -26.71 -0.21 -1.07 16 12 C -0.14 -2.02 3.11 -172.27 -0.54 -2.56 16 13 C 0.59 10.77 8.17 -10.99 -0.09 10.68 16 14 O -0.55 -11.62 17.82 5.56 0.10 -11.52 16 15 N -0.63 -11.86 3.61 -178.41 -0.64 -12.50 16 16 C 0.12 2.30 8.39 -2.97 -0.02 2.28 16 17 C -0.01 -0.14 2.88 -90.83 -0.26 -0.40 16 18 C -0.52 -13.07 9.32 -34.44 -0.32 -13.39 16 19 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 20 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 22 Si 0.87 19.65 27.09 -169.99 -4.60 15.05 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.26 -5.38 5.47 56.52 0.31 -5.07 16 26 C 0.09 1.68 7.37 -2.96 -0.02 1.65 16 27 C -0.10 -1.29 7.93 -24.71 -0.20 -1.49 16 28 C -0.10 -1.20 7.76 -25.99 -0.20 -1.40 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.12 0.92 6.33 -51.93 -0.33 0.60 16 32 H 0.23 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.42 3.28 8.55 -40.82 -0.35 2.93 16 34 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 35 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 36 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.23 7.10 -51.93 -0.37 0.86 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 1.17 6.47 -51.93 -0.34 0.84 16 41 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 42 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 43 H 0.09 1.28 7.45 -51.93 -0.39 0.89 16 44 H 0.09 1.27 7.97 -51.92 -0.41 0.85 16 45 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -32.39 381.63 -9.35 -41.73 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.01 Total: 4.49 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -4.40 Total: 5.25 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.26 Total: -54.07 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.60 Total: 15.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.39 -9.35 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269761121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.709 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds