Wall clock time and date at job start Wed Apr 1 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28868 * 125.95603 * 2 1 4 4 C 1.30930 * 109.00827 * 180.28577 * 3 2 1 5 5 N 1.32960 * 108.46979 * 359.72635 * 4 3 2 6 6 C 1.32140 * 107.31943 * 359.97438 * 5 4 3 7 7 C 1.47770 * 126.44804 * 180.02562 * 6 5 4 8 8 O 1.21559 * 120.00540 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99957 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.54412 * 129.01250 * 180.02562 * 10 9 7 12 12 C 1.54419 * 78.89086 * 180.64334 * 11 10 9 13 13 C 1.50703 * 129.01419 * 180.64405 * 12 11 10 14 14 O 1.21281 * 119.99538 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99988 * 180.02562 * 13 12 11 16 16 C 1.47584 * 134.49063 * 180.02562 * 15 13 12 17 17 C 1.53947 * 86.11565 * 204.63541 * 16 15 13 18 18 C 1.50699 * 113.73968 * 222.04272 * 17 16 15 19 19 H 1.07998 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00043 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00162 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46863 * 89.99320 * 22 20 18 24 24 H 1.48496 * 109.47186 * 209.99414 * 22 20 18 25 25 H 1.48506 * 109.46767 * 329.99535 * 22 20 18 26 26 C 1.47577 * 134.49641 * 359.97438 * 15 13 12 27 27 C 1.54891 * 84.49409 * 43.15382 * 12 11 10 28 28 C 1.54885 * 84.49103 * 318.13307 * 12 11 10 29 29 H 1.08994 * 109.47265 * 270.17860 * 1 2 3 30 30 H 1.08999 * 109.47107 * 30.18333 * 1 2 3 31 31 H 1.08998 * 109.47269 * 150.17781 * 1 2 3 32 32 H 1.07993 * 125.76419 * 179.69914 * 4 3 2 33 33 H 0.97004 * 119.99616 * 0.02562 * 9 7 6 34 34 H 1.08992 * 114.93459 * 68.15798 * 11 10 9 35 35 H 1.08998 * 114.98218 * 293.12337 * 11 10 9 36 36 H 1.09001 * 113.76908 * 90.33461 * 16 15 13 37 37 H 1.08997 * 113.76763 * 318.93723 * 16 15 13 38 38 H 1.08997 * 113.73914 * 90.73986 * 17 16 15 39 39 H 0.97000 * 120.00154 * 180.02562 * 21 20 18 40 40 H 1.08995 * 113.76947 * 41.05826 * 26 15 13 41 41 H 1.09005 * 113.76708 * 269.66738 * 26 15 13 42 42 H 1.09001 * 114.98080 * 69.39259 * 27 12 11 43 43 H 1.09003 * 114.97457 * 204.56822 * 27 12 11 44 44 H 1.09008 * 114.97367 * 155.43371 * 28 12 11 45 45 H 1.08998 * 114.98354 * 290.60293 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6615 -0.0062 5 7 3.5094 -0.6676 -0.0042 6 6 2.2588 -1.0944 0.0039 7 6 1.8119 -2.5029 0.0094 8 8 0.6246 -2.7639 0.0162 9 7 2.7206 -3.4982 0.0067 10 6 2.2776 -4.8946 0.0116 11 6 3.1273 -6.1840 0.0104 12 6 1.6984 -6.7693 0.0011 13 6 1.2643 -8.2125 0.0062 14 8 2.0955 -9.0956 0.0188 15 7 -0.0474 -8.5216 -0.0043 16 6 -0.8126 -9.7836 -0.0031 17 6 -1.9461 -8.9750 -0.6598 18 6 -3.3138 -9.2924 -0.1123 19 1 -3.4248 -10.0292 0.6695 20 6 -4.4232 -8.6414 -0.6087 21 7 -5.6167 -8.9181 -0.1306 22 14 -4.2311 -7.3666 -1.9605 23 1 -4.3351 -8.0300 -3.2850 24 1 -5.3012 -6.3450 -1.8331 25 1 -2.9040 -6.7113 -1.8379 26 6 -1.2955 -7.7343 -0.0208 27 6 1.4146 -5.6678 -1.0503 28 6 1.3958 -5.6548 1.0332 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8915 -0.5111 32 1 4.3332 1.3157 -0.0123 33 1 3.6680 -3.2900 0.0016 34 1 3.6913 -6.3634 0.9256 35 1 3.7004 -6.3567 -0.9005 36 1 -1.0550 -10.1494 0.9947 37 1 -0.3910 -10.5536 -0.6491 38 1 -1.9123 -8.9769 -1.7492 39 1 -6.3973 -8.4604 -0.4801 40 1 -1.2596 -6.8677 -0.6808 41 1 -1.6796 -7.4989 0.9718 42 1 1.9027 -5.8144 -2.0138 43 1 0.3710 -5.3624 -1.1266 44 1 0.3510 -5.3485 1.0868 45 1 1.8662 -5.7893 2.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269761121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:36 Heat of formation + Delta-G solvation = 148.657039 kcal Electronic energy + Delta-G solvation = -29867.131336 eV Core-core repulsion = 25698.501944 eV Total energy + Delta-G solvation = -4168.629392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.57354 -43.27568 -40.83816 -40.23449 -38.55444 -35.95464 -34.84676 -34.64324 -32.87972 -31.45053 -28.80028 -27.95872 -27.01867 -26.91975 -26.71372 -26.20008 -24.69002 -23.54187 -22.10074 -21.45803 -20.35965 -19.41927 -19.22862 -19.09191 -18.10066 -17.96604 -17.75336 -17.34474 -16.69150 -16.26210 -16.01553 -15.88884 -15.49646 -15.45859 -15.27834 -15.13459 -14.88495 -14.66948 -14.21528 -14.08433 -13.72285 -13.53222 -13.38953 -13.16913 -13.00185 -12.75525 -12.57298 -12.46366 -12.26051 -11.86156 -11.77290 -11.65296 -11.63378 -11.60603 -11.47714 -11.35966 -11.22956 -10.84888 -10.72786 -10.64698 -10.28691 -9.65380 -8.27069 -6.34217 -0.13149 0.89066 1.31322 1.38486 1.41723 1.43842 1.53208 1.64491 1.92609 1.93352 2.38680 2.74102 3.03726 3.05473 3.17491 3.20465 3.28159 3.37696 3.42730 3.48662 3.78093 4.05983 4.21127 4.26544 4.31416 4.42794 4.45698 4.52053 4.53995 4.58960 4.60753 4.73116 4.75927 4.78034 4.78721 4.87448 4.90567 4.98407 5.12947 5.21574 5.22746 5.28883 5.37643 5.61188 6.09113 6.28376 6.70121 6.72739 6.79458 6.96079 7.09216 7.33136 8.88465 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002944 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.953769 B = 9508.674823 C =11517.881807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.260 5.260 3 N -0.316 5.316 4 C 0.163 3.837 5 N -0.481 5.481 6 C 0.148 3.852 7 C 0.613 3.387 8 O -0.535 6.535 9 N -0.634 5.634 10 C 0.109 3.891 11 C -0.062 4.062 12 C -0.167 4.167 13 C 0.590 3.410 14 O -0.583 6.583 15 N -0.633 5.633 16 C 0.119 3.881 17 C -0.013 4.013 18 C -0.513 4.513 19 H 0.042 0.958 20 C 0.021 3.979 21 N -0.944 5.944 22 Si 0.935 3.065 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.230 1.230 26 C 0.103 3.897 27 C -0.100 4.100 28 C -0.095 4.095 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.260 0.740 33 H 0.432 0.568 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.910 20.753 -1.041 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.056 5.056 3 N -0.154 5.154 4 C -0.135 4.135 5 N -0.209 5.209 6 C -0.127 4.127 7 C 0.396 3.604 8 O -0.409 6.409 9 N -0.284 5.284 10 C 0.020 3.980 11 C -0.100 4.100 12 C -0.171 4.171 13 C 0.380 3.620 14 O -0.464 6.464 15 N -0.365 5.365 16 C -0.002 4.002 17 C -0.032 4.032 18 C -0.551 4.551 19 H 0.060 0.940 20 C -0.178 4.178 21 N -0.583 5.583 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.216 1.216 25 H -0.153 1.153 26 C -0.019 4.019 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.276 0.724 33 H 0.272 0.728 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.564 20.651 -1.034 27.788 hybrid contribution -0.476 0.201 -0.267 0.581 sum 18.088 20.852 -1.301 27.635 Atomic orbital electron populations 1.22739 0.70009 1.07315 1.06556 1.47327 1.10392 1.02308 1.45597 1.74265 1.04953 1.13820 1.22375 1.26748 0.94908 0.90335 1.01542 1.71197 1.17916 1.12441 1.19393 1.23900 0.87559 0.91887 1.09379 1.16443 0.85415 0.81840 0.76719 1.90865 1.16510 1.83417 1.50100 1.44036 1.10575 1.01471 1.72361 1.22957 0.97362 0.80414 0.97259 1.23932 0.93172 0.88037 1.04847 1.23101 1.01560 0.90307 1.02101 1.18489 0.80347 0.88008 0.75130 1.90644 1.52035 1.50287 1.53464 1.50211 1.03804 1.11928 1.70587 1.23225 0.88202 0.87925 1.00894 1.20885 0.92695 0.92956 0.96699 1.20989 0.90234 1.23088 1.20815 0.93963 1.25840 0.94490 0.98716 0.98707 1.70038 0.99490 1.44144 1.44611 0.85946 0.79772 0.79125 0.79328 1.19863 1.21565 1.15272 1.23876 0.79445 0.97241 1.01379 1.24903 1.00883 0.91142 0.97020 1.24397 1.00837 0.90924 0.97241 0.87780 0.86274 0.87177 0.72415 0.72819 0.88232 0.88088 0.90171 0.90597 0.91773 0.92389 0.90333 0.89804 0.88833 0.90530 0.90327 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.85 127.77 1.39 2.32 16 2 N -0.26 -4.66 3.74 -361.56 -1.35 -6.01 16 3 N -0.32 -5.52 12.07 -61.30 -0.74 -6.26 16 4 C 0.16 2.34 13.03 180.79 2.36 4.70 16 5 N -0.48 -8.38 11.09 -193.33 -2.14 -10.53 16 6 C 0.15 2.84 7.83 136.70 1.07 3.91 16 7 C 0.61 12.56 7.83 86.76 0.68 13.24 16 8 O -0.53 -13.39 14.61 -3.90 -0.06 -13.45 16 9 N -0.63 -10.74 5.71 -473.59 -2.70 -13.45 16 10 C 0.11 2.12 3.92 -6.34 -0.02 2.10 16 11 C -0.06 -1.17 7.78 30.61 0.24 -0.93 16 12 C -0.17 -4.39 3.11 -63.68 -0.20 -4.59 16 13 C 0.59 20.72 8.17 87.66 0.72 21.44 16 14 O -0.58 -23.85 17.82 -3.03 -0.05 -23.90 16 15 N -0.63 -23.10 3.61 -836.76 -3.02 -26.12 16 16 C 0.12 4.59 8.39 86.48 0.73 5.32 16 17 C -0.01 -0.54 2.88 -10.87 -0.03 -0.57 16 18 C -0.51 -26.62 9.32 25.60 0.24 -26.38 16 19 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 20 C 0.02 1.12 5.47 84.65 0.46 1.59 16 21 N -0.94 -55.52 13.96 21.45 0.30 -55.22 16 22 Si 0.93 40.14 27.09 68.60 1.86 42.00 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.23 -8.69 5.47 99.48 0.54 -8.15 16 26 C 0.10 3.79 7.37 86.49 0.64 4.43 16 27 C -0.10 -2.33 7.93 31.90 0.25 -2.08 16 28 C -0.09 -2.21 7.76 31.07 0.24 -1.97 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 1.62 6.33 -2.39 -0.02 1.60 16 32 H 0.26 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.43 5.44 8.55 -92.71 -0.79 4.65 16 34 H 0.10 1.66 7.94 -2.39 -0.02 1.64 16 35 H 0.10 1.67 7.91 -2.39 -0.02 1.65 16 36 H 0.08 3.11 8.09 -2.39 -0.02 3.09 16 37 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 38 H 0.06 2.63 7.10 -2.39 -0.02 2.62 16 39 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.08 2.69 6.47 -2.39 -0.02 2.67 16 41 H 0.08 3.14 8.09 -2.38 -0.02 3.13 16 42 H 0.09 1.93 7.91 -2.39 -0.02 1.91 16 43 H 0.08 2.01 7.45 -2.39 -0.02 1.99 16 44 H 0.08 2.06 7.97 -2.38 -0.02 2.04 16 45 H 0.09 1.89 7.93 -2.39 -0.02 1.87 16 Total: -1.00 -70.78 381.63 0.93 -69.85 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.09 Total: 20.58 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 8.75 Total: 22.51 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -9.66 Total: -117.59 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.11 Total: -37.35 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.86 Total: 42.00 kcal Total: -70.78 0.93 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269761121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.512 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds