Wall clock time and date at job start Wed Apr 1 2020 03:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 N 1.28867 * 125.95712 * 2 1 4 4 C 1.30932 * 109.00839 * 180.02562 * 3 2 1 5 5 N 1.32960 * 108.46970 * 359.77205 * 4 3 2 6 6 C 1.32152 * 107.31657 * 0.36661 * 5 4 3 7 7 C 1.47767 * 126.44045 * 179.90571 * 6 5 4 8 8 O 1.21553 * 120.00006 * 179.68919 * 7 6 5 9 9 N 1.34781 * 120.00374 * 359.68322 * 7 6 5 10 10 C 1.47362 * 127.43185 * 358.99643 * 9 7 6 11 11 C 1.54389 * 105.12798 * 219.00987 * 10 9 7 12 12 H 1.09004 * 117.61219 * 116.61148 * 11 10 9 13 13 C 1.53000 * 118.89924 * 274.17633 * 11 10 9 14 14 C 1.53004 * 60.55551 * 91.09932 * 13 11 10 15 15 C 1.50697 * 120.26237 * 111.47636 * 14 13 11 16 16 O 1.21282 * 119.99990 * 291.80277 * 15 14 13 17 17 N 1.34770 * 120.00085 * 111.80487 * 15 14 13 18 18 C 1.47075 * 136.05609 * 359.62983 * 17 15 14 19 19 C 1.53243 * 88.08280 * 207.20500 * 18 17 15 20 20 C 1.50697 * 114.50434 * 220.45628 * 19 18 17 21 21 H 1.08007 * 120.00162 * 93.84150 * 20 19 18 22 22 C 1.37876 * 119.99859 * 273.84237 * 20 19 18 23 23 N 1.31510 * 120.00141 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47116 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47310 * 119.99937 * 24 22 20 27 27 H 1.48497 * 109.47136 * 239.99985 * 24 22 20 28 28 C 1.47070 * 136.05953 * 179.97438 * 17 15 14 29 29 C 1.48146 * 127.83955 * 179.97438 * 9 7 6 30 30 H 1.09006 * 109.47200 * 269.97667 * 1 2 3 31 31 H 1.08996 * 109.47604 * 29.97141 * 1 2 3 32 32 H 1.09002 * 109.47969 * 149.97868 * 1 2 3 33 33 H 1.07998 * 125.76439 * 180.02562 * 4 3 2 34 34 H 1.09008 * 108.98294 * 100.65382 * 10 9 7 35 35 H 1.08999 * 111.42882 * 338.62820 * 10 9 7 36 36 H 1.09000 * 117.44690 * 343.44929 * 13 11 10 37 37 H 1.09006 * 117.44005 * 198.74625 * 13 11 10 38 38 H 1.08997 * 113.46210 * 321.93090 * 18 17 15 39 39 H 1.08993 * 113.47184 * 92.37217 * 18 17 15 40 40 H 1.08997 * 114.01862 * 87.70743 * 19 18 17 41 41 H 0.96996 * 119.99980 * 180.02562 * 23 22 20 42 42 H 1.09006 * 113.46576 * 267.62037 * 28 17 15 43 43 H 1.08997 * 113.46849 * 38.05987 * 28 17 15 44 44 H 1.09002 * 110.40776 * 21.63579 * 29 9 7 45 45 H 1.09002 * 110.40863 * 259.31987 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6614 -0.0006 5 7 3.5093 -0.6677 0.0041 6 6 2.2586 -1.0944 -0.0006 7 6 1.8117 -2.5029 0.0001 8 8 0.6246 -2.7639 0.0011 9 7 2.7205 -3.4983 -0.0006 10 6 4.1884 -3.3710 -0.0225 11 6 4.6770 -4.5010 -0.9541 12 1 5.1900 -4.2130 -1.8717 13 6 4.9059 -5.8956 -0.3677 14 6 3.5369 -5.5404 -0.9513 15 6 3.0583 -6.1981 -2.2199 16 8 3.6061 -5.9531 -3.2739 17 7 2.0216 -7.0584 -2.1834 18 6 1.1320 -7.6012 -1.1455 19 6 0.9522 -8.8448 -2.0226 20 6 -0.4545 -9.3838 -2.0621 21 1 -1.1282 -9.0777 -2.8489 22 6 -0.8815 -10.2676 -1.0938 23 7 -0.0614 -10.6399 -0.1356 24 14 -2.6251 -10.9363 -1.1431 25 1 -3.3410 -10.3660 -2.3125 26 1 -2.5846 -12.4161 -1.2604 27 1 -3.3358 -10.5578 0.1045 28 6 1.2857 -7.8722 -3.1627 29 6 2.4692 -4.9583 0.0003 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3635 -0.8898 -0.5141 33 1 4.3333 1.3157 -0.0003 34 1 4.5722 -3.5180 0.9871 35 1 4.4982 -2.3997 -0.4082 36 1 4.9839 -5.9782 0.7163 37 1 5.5315 -6.5833 -0.9369 38 1 1.6395 -7.8064 -0.2029 39 1 0.2156 -7.0259 -1.0148 40 1 1.7047 -9.6161 -1.8585 41 1 -0.3617 -11.2619 0.5454 42 1 0.4104 -7.3696 -3.5745 43 1 1.9234 -8.3073 -3.9322 44 1 1.4684 -5.1720 -0.3750 45 1 2.5925 -5.3646 1.0043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269761727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:10 Heat of formation + Delta-G solvation = 118.588531 kcal Electronic energy + Delta-G solvation = -30356.501003 eV Core-core repulsion = 26186.567742 eV Total energy + Delta-G solvation = -4169.933260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.76889 -40.89842 -39.33896 -38.39796 -36.84043 -35.01035 -33.74335 -32.72361 -32.11951 -29.85935 -28.42917 -28.11277 -26.71717 -25.42289 -25.01488 -23.81931 -22.84498 -22.25756 -21.21371 -20.09197 -19.79406 -18.34153 -17.42388 -17.19413 -17.12348 -16.84908 -16.23173 -16.00909 -15.76383 -15.34622 -14.90688 -14.75910 -14.52275 -13.98726 -13.90104 -13.62759 -13.53646 -13.32988 -13.21593 -12.58265 -12.50829 -12.36018 -12.21931 -11.91487 -11.77130 -11.53143 -11.30304 -10.98217 -10.85876 -10.81752 -10.71165 -10.64102 -10.39881 -10.36441 -10.01463 -9.88451 -9.63016 -9.25458 -9.09430 -8.93651 -8.61070 -7.92510 -6.20716 -4.26060 0.77755 1.73275 2.14845 2.61128 2.81052 2.87317 3.21873 3.30561 3.33077 3.38345 3.55737 3.70096 4.11142 4.31153 4.32504 4.37753 4.50524 4.74867 4.77046 4.81787 4.87168 5.02343 5.10042 5.19342 5.28691 5.54739 5.56767 5.59040 5.70962 5.77477 5.82509 5.94266 5.99071 6.02018 6.04981 6.13879 6.15991 6.23446 6.40765 6.53037 6.61810 6.79265 7.10899 7.52592 7.53394 7.77282 7.80834 8.15333 8.44237 8.69109 8.78314 9.41087 10.89039 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.002872 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.051352 B = 9748.620001 C =11019.126736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.260 5.260 3 N -0.304 5.304 4 C 0.161 3.839 5 N -0.473 5.473 6 C 0.171 3.829 7 C 0.625 3.375 8 O -0.525 6.525 9 N -0.593 5.593 10 C 0.117 3.883 11 C -0.144 4.144 12 H 0.131 0.869 13 C -0.101 4.101 14 C -0.179 4.179 15 C 0.577 3.423 16 O -0.562 6.562 17 N -0.636 5.636 18 C 0.098 3.902 19 C 0.036 3.964 20 C -0.516 4.516 21 H 0.064 0.936 22 C 0.069 3.931 23 N -0.885 5.885 24 Si 0.895 3.105 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.100 3.900 29 C 0.146 3.854 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.264 0.736 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 18.353 4.796 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.055 5.055 3 N -0.142 5.142 4 C -0.138 4.138 5 N -0.200 5.200 6 C -0.104 4.104 7 C 0.409 3.591 8 O -0.400 6.400 9 N -0.325 5.325 10 C -0.005 4.005 11 C -0.163 4.163 12 H 0.149 0.851 13 C -0.139 4.139 14 C -0.184 4.184 15 C 0.366 3.634 16 O -0.442 6.442 17 N -0.368 5.368 18 C -0.024 4.024 19 C 0.017 3.983 20 C -0.555 4.555 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.021 4.021 29 C 0.025 3.975 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.241 0.759 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.066 18.893 4.423 20.650 hybrid contribution -1.060 -0.364 0.092 1.124 sum 6.006 18.529 4.515 19.994 Atomic orbital electron populations 1.22547 0.71267 1.06717 1.05586 1.47062 1.09538 1.02517 1.46387 1.74230 1.04331 1.13607 1.22039 1.26003 0.94233 0.90616 1.02952 1.71194 1.18113 1.11217 1.19517 1.24010 0.86899 0.91952 1.07549 1.15883 0.84669 0.80913 0.77594 1.90849 1.15161 1.82908 1.51063 1.48630 1.07515 1.06009 1.70364 1.22222 0.78235 1.00558 0.99477 1.23853 1.00714 0.89283 1.02462 0.85106 1.23076 0.93407 0.96068 1.01313 1.22614 0.91177 1.05770 0.98812 1.18465 0.79785 0.77439 0.87745 1.90645 1.58427 1.63578 1.31568 1.49891 1.29633 1.41659 1.15666 1.23607 0.90434 0.95500 0.92908 1.20294 0.98282 0.90936 0.88797 1.20933 0.96155 1.26683 1.11686 0.91783 1.25017 0.97699 0.95543 0.95213 1.69951 1.35297 1.33155 1.13771 0.86489 0.84332 0.78787 0.78153 1.19561 1.20871 1.20873 1.23390 0.93156 0.90773 0.94820 1.21845 0.99463 0.77172 0.99016 0.88831 0.88233 0.86422 0.75908 0.90316 0.85942 0.87524 0.86977 0.91956 0.90720 0.91325 0.92676 0.90827 0.92384 0.88294 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.86 59.84 0.65 1.30 16 2 N -0.26 -2.94 3.74 -65.63 -0.25 -3.18 16 3 N -0.30 -3.34 12.08 29.28 0.35 -2.98 16 4 C 0.16 1.56 13.03 -91.88 -1.20 0.36 16 5 N -0.47 -5.44 8.45 -12.46 -0.11 -5.55 16 6 C 0.17 2.17 7.70 -155.26 -1.20 0.98 16 7 C 0.62 8.91 7.91 -12.36 -0.10 8.81 16 8 O -0.53 -8.44 14.95 5.32 0.08 -8.36 16 9 N -0.59 -7.96 3.30 -171.06 -0.57 -8.53 16 10 C 0.12 1.29 6.41 -2.84 -0.02 1.27 16 11 C -0.14 -1.74 6.76 -89.22 -0.60 -2.34 16 12 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 13 C -0.10 -1.15 9.92 -26.73 -0.27 -1.42 16 14 C -0.18 -2.67 2.72 -154.24 -0.42 -3.09 16 15 C 0.58 11.24 7.71 -10.99 -0.08 11.16 16 16 O -0.56 -12.55 17.59 5.56 0.10 -12.45 16 17 N -0.64 -12.81 3.61 -185.33 -0.67 -13.48 16 18 C 0.10 2.00 6.35 -8.62 -0.05 1.95 16 19 C 0.04 0.83 3.76 -91.38 -0.34 0.48 16 20 C -0.52 -12.96 8.84 -34.44 -0.30 -13.26 16 21 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.88 -23.60 13.26 55.43 0.74 -22.87 16 24 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.10 2.09 8.19 -8.48 -0.07 2.02 16 29 C 0.15 2.07 6.12 -2.39 -0.01 2.06 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.12 1.09 6.32 -51.93 -0.33 0.76 16 33 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.12 1.35 5.57 -51.93 -0.29 1.06 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 40 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 41 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 42 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.10 1.63 6.45 -51.93 -0.33 1.29 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -31.98 379.62 -9.72 -41.70 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.98 Total: 3.18 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -4.12 Total: 11.93 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.50 Total: -56.59 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.18 Total: -20.82 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.98 -9.72 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269761727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.286 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds