Wall clock time and date at job start Wed Apr 1 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 N 1.28867 * 125.95712 * 2 1 4 4 C 1.30932 * 109.00839 * 180.02562 * 3 2 1 5 5 N 1.32960 * 108.46970 * 359.77205 * 4 3 2 6 6 C 1.32152 * 107.31657 * 0.36661 * 5 4 3 7 7 C 1.47767 * 126.44045 * 179.90571 * 6 5 4 8 8 O 1.21553 * 120.00006 * 179.68919 * 7 6 5 9 9 N 1.34781 * 120.00374 * 359.68322 * 7 6 5 10 10 C 1.47362 * 127.43185 * 358.99643 * 9 7 6 11 11 C 1.54389 * 105.12798 * 219.00987 * 10 9 7 12 12 H 1.09004 * 117.61219 * 116.61148 * 11 10 9 13 13 C 1.53000 * 118.89924 * 274.17633 * 11 10 9 14 14 C 1.53004 * 60.55551 * 91.09932 * 13 11 10 15 15 C 1.50697 * 120.26237 * 111.47636 * 14 13 11 16 16 O 1.21282 * 119.99990 * 291.80277 * 15 14 13 17 17 N 1.34770 * 120.00085 * 111.80487 * 15 14 13 18 18 C 1.47075 * 136.05609 * 359.62983 * 17 15 14 19 19 C 1.53243 * 88.08280 * 207.20500 * 18 17 15 20 20 C 1.50697 * 114.50434 * 220.45628 * 19 18 17 21 21 H 1.08007 * 120.00162 * 93.84150 * 20 19 18 22 22 C 1.37876 * 119.99859 * 273.84237 * 20 19 18 23 23 N 1.31510 * 120.00141 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47116 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47310 * 119.99937 * 24 22 20 27 27 H 1.48497 * 109.47136 * 239.99985 * 24 22 20 28 28 C 1.47070 * 136.05953 * 179.97438 * 17 15 14 29 29 C 1.48146 * 127.83955 * 179.97438 * 9 7 6 30 30 H 1.09006 * 109.47200 * 269.97667 * 1 2 3 31 31 H 1.08996 * 109.47604 * 29.97141 * 1 2 3 32 32 H 1.09002 * 109.47969 * 149.97868 * 1 2 3 33 33 H 1.07998 * 125.76439 * 180.02562 * 4 3 2 34 34 H 1.09008 * 108.98294 * 100.65382 * 10 9 7 35 35 H 1.08999 * 111.42882 * 338.62820 * 10 9 7 36 36 H 1.09000 * 117.44690 * 343.44929 * 13 11 10 37 37 H 1.09006 * 117.44005 * 198.74625 * 13 11 10 38 38 H 1.08997 * 113.46210 * 321.93090 * 18 17 15 39 39 H 1.08993 * 113.47184 * 92.37217 * 18 17 15 40 40 H 1.08997 * 114.01862 * 87.70743 * 19 18 17 41 41 H 0.96996 * 119.99980 * 180.02562 * 23 22 20 42 42 H 1.09006 * 113.46576 * 267.62037 * 28 17 15 43 43 H 1.08997 * 113.46849 * 38.05987 * 28 17 15 44 44 H 1.09002 * 110.40776 * 21.63579 * 29 9 7 45 45 H 1.09002 * 110.40863 * 259.31987 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6614 -0.0006 5 7 3.5093 -0.6677 0.0041 6 6 2.2586 -1.0944 -0.0006 7 6 1.8117 -2.5029 0.0001 8 8 0.6246 -2.7639 0.0011 9 7 2.7205 -3.4983 -0.0006 10 6 4.1884 -3.3710 -0.0225 11 6 4.6770 -4.5010 -0.9541 12 1 5.1900 -4.2130 -1.8717 13 6 4.9059 -5.8956 -0.3677 14 6 3.5369 -5.5404 -0.9513 15 6 3.0583 -6.1981 -2.2199 16 8 3.6061 -5.9531 -3.2739 17 7 2.0216 -7.0584 -2.1834 18 6 1.1320 -7.6012 -1.1455 19 6 0.9522 -8.8448 -2.0226 20 6 -0.4545 -9.3838 -2.0621 21 1 -1.1282 -9.0777 -2.8489 22 6 -0.8815 -10.2676 -1.0938 23 7 -0.0614 -10.6399 -0.1356 24 14 -2.6251 -10.9363 -1.1431 25 1 -3.3410 -10.3660 -2.3125 26 1 -2.5846 -12.4161 -1.2604 27 1 -3.3358 -10.5578 0.1045 28 6 1.2857 -7.8722 -3.1627 29 6 2.4692 -4.9583 0.0003 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3635 -0.8898 -0.5141 33 1 4.3333 1.3157 -0.0003 34 1 4.5722 -3.5180 0.9871 35 1 4.4982 -2.3997 -0.4082 36 1 4.9839 -5.9782 0.7163 37 1 5.5315 -6.5833 -0.9369 38 1 1.6395 -7.8064 -0.2029 39 1 0.2156 -7.0259 -1.0148 40 1 1.7047 -9.6161 -1.8585 41 1 -0.3617 -11.2619 0.5454 42 1 0.4104 -7.3696 -3.5745 43 1 1.9234 -8.3073 -3.9322 44 1 1.4684 -5.1720 -0.3750 45 1 2.5925 -5.3646 1.0043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269761727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:09 Heat of formation + Delta-G solvation = 99.972113 kcal Electronic energy + Delta-G solvation = -30357.308271 eV Core-core repulsion = 26186.567742 eV Total energy + Delta-G solvation = -4170.740529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.58604 -42.07025 -40.76385 -39.67395 -38.40922 -35.84714 -34.75330 -34.65702 -32.96952 -31.40123 -29.65660 -28.93025 -27.64433 -27.20580 -26.70975 -24.77585 -24.03771 -23.23828 -22.31460 -21.34434 -21.01396 -19.69846 -18.75854 -18.48670 -18.12715 -18.01784 -17.70762 -17.02599 -16.83248 -16.76835 -16.49590 -16.12540 -15.63466 -15.23779 -15.04337 -14.75664 -14.60542 -14.22130 -14.21295 -14.12948 -13.92398 -13.47777 -13.29293 -13.23777 -13.12225 -12.97590 -12.76475 -12.72408 -12.58557 -12.19647 -11.90269 -11.72084 -11.49831 -11.42491 -11.24427 -11.08391 -11.02929 -10.73312 -10.71681 -10.52705 -10.00997 -9.61672 -8.16767 -6.27237 -0.14703 0.87944 1.32256 1.41052 1.45605 1.49461 1.59409 1.71704 1.89864 1.94700 2.39272 2.46128 2.77416 3.13211 3.28645 3.34376 3.42404 3.44272 3.64119 3.81389 3.99633 4.18627 4.21613 4.24193 4.32687 4.37976 4.43014 4.50606 4.56463 4.58497 4.67275 4.70809 4.75533 4.82554 4.87222 4.91785 4.97492 5.07335 5.11798 5.13488 5.24179 5.35838 5.59094 5.81723 6.09910 6.23157 6.52957 6.80573 6.84521 6.96015 7.09389 7.42539 8.93258 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.002872 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.051352 B = 9748.620001 C =11019.126736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.261 5.261 3 N -0.314 5.314 4 C 0.164 3.836 5 N -0.476 5.476 6 C 0.151 3.849 7 C 0.620 3.380 8 O -0.554 6.554 9 N -0.595 5.595 10 C 0.123 3.877 11 C -0.128 4.128 12 H 0.123 0.877 13 C -0.074 4.074 14 C -0.209 4.209 15 C 0.571 3.429 16 O -0.596 6.596 17 N -0.638 5.638 18 C 0.118 3.882 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.063 0.937 22 C 0.025 3.975 23 N -0.914 5.914 24 Si 0.955 3.045 25 H -0.267 1.267 26 H -0.282 1.282 27 H -0.280 1.280 28 C 0.103 3.897 29 C 0.152 3.848 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.263 0.737 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.197 19.821 6.099 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.057 5.057 3 N -0.152 5.152 4 C -0.135 4.135 5 N -0.204 5.204 6 C -0.124 4.124 7 C 0.405 3.595 8 O -0.431 6.431 9 N -0.327 5.327 10 C 0.002 3.998 11 C -0.148 4.148 12 H 0.141 0.859 13 C -0.112 4.112 14 C -0.214 4.214 15 C 0.362 3.638 16 O -0.479 6.479 17 N -0.370 5.370 18 C -0.004 4.004 19 C 0.008 3.992 20 C -0.567 4.567 21 H 0.081 0.919 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.781 3.219 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.205 1.205 28 C -0.019 4.019 29 C 0.030 3.970 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.279 0.721 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.954 20.368 5.726 22.603 hybrid contribution -1.274 -0.769 -0.398 1.540 sum 6.680 19.599 5.328 21.380 Atomic orbital electron populations 1.22714 0.70080 1.07066 1.06632 1.47310 1.10396 1.02235 1.45713 1.74246 1.04948 1.13551 1.22424 1.26834 0.94929 0.90388 1.01301 1.71173 1.17537 1.12168 1.19526 1.23770 0.87750 0.91510 1.09342 1.16137 0.84445 0.81732 0.77180 1.90825 1.16333 1.83529 1.52426 1.48724 1.08495 1.05581 1.69896 1.22355 0.76696 1.00054 1.00714 1.23954 0.98550 0.89720 1.02533 0.85876 1.23280 0.89676 0.95011 1.03213 1.22527 0.92872 1.08247 0.97722 1.19271 0.78725 0.76672 0.89100 1.90615 1.59240 1.64655 1.33413 1.49899 1.29988 1.42124 1.14993 1.23265 0.90492 0.93955 0.92717 1.20163 0.96808 0.91309 0.90910 1.21198 0.97020 1.26893 1.11595 0.91928 1.25698 1.01077 0.95877 0.94954 1.70038 1.36862 1.33846 1.14411 0.85547 0.80209 0.77986 0.78165 1.19154 1.20755 1.20549 1.23263 0.93576 0.90599 0.94493 1.21768 0.97644 0.77823 0.99767 0.87445 0.86026 0.87882 0.72141 0.87423 0.85754 0.84051 0.87072 0.91383 0.90979 0.93780 0.92564 0.90417 0.92360 0.91246 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.86 127.77 1.39 2.56 16 2 N -0.26 -5.61 3.74 -361.55 -1.35 -6.96 16 3 N -0.31 -6.28 12.08 -61.29 -0.74 -7.02 16 4 C 0.16 2.76 13.03 180.79 2.36 5.11 16 5 N -0.48 -10.00 8.45 -193.33 -1.63 -11.64 16 6 C 0.15 3.68 7.70 136.70 1.05 4.73 16 7 C 0.62 17.46 7.91 86.76 0.69 18.15 16 8 O -0.55 -18.18 14.95 -3.88 -0.06 -18.24 16 9 N -0.60 -15.27 3.30 -813.39 -2.69 -17.96 16 10 C 0.12 2.39 6.41 86.69 0.56 2.94 16 11 C -0.13 -2.84 6.76 -9.89 -0.07 -2.90 16 12 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 13 C -0.07 -1.49 9.92 30.60 0.30 -1.19 16 14 C -0.21 -6.00 2.72 -52.01 -0.14 -6.14 16 15 C 0.57 22.39 7.71 87.66 0.68 23.06 16 16 O -0.60 -27.01 17.59 -3.04 -0.05 -27.06 16 17 N -0.64 -26.11 3.61 -858.65 -3.10 -29.22 16 18 C 0.12 4.91 6.35 83.10 0.53 5.44 16 19 C 0.03 1.29 3.76 -11.28 -0.04 1.24 16 20 C -0.53 -26.88 8.84 25.60 0.23 -26.66 16 21 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 22 C 0.02 1.27 5.46 84.66 0.46 1.73 16 23 N -0.91 -49.08 13.26 21.45 0.28 -48.80 16 24 Si 0.96 40.82 29.54 68.60 2.03 42.85 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.10 4.39 8.19 83.19 0.68 5.07 16 29 C 0.15 4.14 6.12 86.54 0.53 4.67 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.96 6.32 -2.39 -0.02 1.94 16 33 H 0.26 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.12 2.43 5.57 -2.39 -0.01 2.42 16 36 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 40 H 0.04 2.28 8.11 -2.39 -0.02 2.26 16 41 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 42 H 0.08 3.22 8.10 -2.38 -0.02 3.20 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.07 2.31 6.45 -2.39 -0.02 2.29 16 45 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -70.10 379.62 2.90 -67.19 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.03 Total: 19.03 kcal Atomic # 6 Polarization: 28.63 SS G_CDS: 9.19 Total: 37.82 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -9.23 Total: -121.59 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.11 Total: -45.30 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -70.10 2.90 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269761727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.166 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds