Wall clock time and date at job start Wed Apr 1 2020 03:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34590 * 125.75384 * 2 1 4 4 N 1.30871 * 107.62698 * 179.75167 * 3 2 1 5 5 C 1.34548 * 107.26664 * 0.41906 * 4 3 2 6 6 C 1.47876 * 126.04885 * 179.83292 * 5 4 3 7 7 O 1.21553 * 120.00223 * 179.69306 * 6 5 4 8 8 N 1.34777 * 119.99429 * 359.96853 * 6 5 4 9 9 C 1.47254 * 135.90387 * 359.36117 * 8 6 5 10 10 C 1.52865 * 87.60104 * 153.80812 * 9 8 6 11 11 C 1.52092 * 129.75588 * 164.46357 * 10 9 8 12 12 C 1.52093 * 129.98241 * 246.48983 * 10 9 8 13 13 H 1.08998 * 117.52265 * 348.45063 * 12 10 9 14 14 C 1.50702 * 117.52349 * 133.55263 * 12 10 9 15 15 O 1.21276 * 119.99854 * 0.02562 * 14 12 10 16 16 N 1.34772 * 119.99968 * 180.02562 * 14 12 10 17 17 C 1.47071 * 136.05995 * 359.63115 * 16 14 12 18 18 C 1.53751 * 87.88827 * 152.96050 * 17 16 14 19 19 C 1.50701 * 114.26754 * 139.79162 * 18 17 16 20 20 H 1.08001 * 120.00112 * 266.48133 * 19 18 17 21 21 C 1.37881 * 120.00064 * 86.47163 * 19 18 17 22 22 N 1.31506 * 119.99859 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99724 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47113 * 89.99620 * 23 21 19 25 25 H 1.48497 * 109.46931 * 209.99532 * 23 21 19 26 26 H 1.48497 * 109.47238 * 329.99569 * 23 21 19 27 27 C 1.47073 * 136.05625 * 180.02562 * 16 14 12 28 28 C 1.47258 * 135.89818 * 179.72258 * 8 6 5 29 29 N 1.28857 * 125.74763 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47175 * 270.00516 * 1 2 3 31 31 H 1.09004 * 109.47151 * 30.00112 * 1 2 3 32 32 H 1.08993 * 109.47844 * 149.99917 * 1 2 3 33 33 H 1.07992 * 126.18329 * 0.03677 * 3 2 1 34 34 H 1.09007 * 113.51101 * 268.46930 * 9 8 6 35 35 H 1.08996 * 113.51443 * 39.05534 * 9 8 6 36 36 H 1.08996 * 117.52448 * 226.72320 * 11 10 9 37 37 H 1.08999 * 117.52593 * 11.88797 * 11 10 9 38 38 H 1.09000 * 113.46901 * 267.69765 * 17 16 14 39 39 H 1.09002 * 113.46299 * 38.13660 * 17 16 14 40 40 H 1.08997 * 114.39959 * 272.68174 * 18 17 16 41 41 H 0.97006 * 119.99872 * 180.02562 * 22 21 19 42 42 H 1.08999 * 113.46777 * 321.86592 * 27 16 14 43 43 H 1.09001 * 113.46458 * 92.24471 * 27 16 14 44 44 H 1.09004 * 113.51115 * 320.93987 * 28 8 6 45 45 H 1.08992 * 113.51642 * 91.46151 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 0.0054 5 6 3.4749 -0.6602 -0.0007 6 6 4.6574 -1.5483 -0.0012 7 8 4.5112 -2.7550 -0.0014 8 7 5.8971 -1.0195 0.0041 9 6 6.4679 0.3378 -0.0004 10 6 7.7017 -0.2481 0.6859 11 6 9.0913 0.3449 0.8605 12 6 8.2452 -0.0125 2.0867 13 1 7.8181 0.8096 2.6610 14 6 8.6538 -1.2219 2.8877 15 8 8.5439 -2.3311 2.4099 16 7 9.1414 -1.0707 4.1350 17 6 9.4243 0.0603 5.0317 18 6 9.2063 -0.8970 6.2149 19 6 10.1770 -0.7074 7.3520 20 1 11.0794 -1.2991 7.3959 21 6 9.9131 0.2216 8.3361 22 7 10.7605 0.3873 9.3280 23 14 8.3521 1.2447 8.2602 24 1 7.2622 0.5389 8.9809 25 1 8.5935 2.5640 8.8974 26 1 7.9595 1.4443 6.8421 27 6 9.6314 -1.9637 5.1960 28 6 7.2718 -1.5474 0.0104 29 7 2.2177 -1.0458 -0.0005 30 1 -0.3634 0.0001 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.9165 2.1189 0.0006 34 1 6.6680 0.7221 -1.0007 35 1 5.9167 1.0435 0.6211 36 1 9.9441 -0.2947 0.6334 37 1 9.2206 1.4021 0.6286 38 1 10.4468 0.4298 4.9550 39 1 8.6822 0.8565 4.9733 40 1 8.1699 -0.9794 6.5424 41 1 10.5747 1.0407 10.0205 42 1 9.0659 -2.8919 5.2775 43 1 10.7084 -2.1281 5.1619 44 1 7.3967 -2.4275 0.6412 45 1 7.6914 -1.6799 -0.9867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269779867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:39 Heat of formation + Delta-G solvation = 149.909234 kcal Electronic energy + Delta-G solvation = -29430.743028 eV Core-core repulsion = 25262.167936 eV Total energy + Delta-G solvation = -4168.575093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.75733 -40.83319 -39.47455 -38.30196 -37.02528 -34.98562 -34.52975 -32.65746 -32.09135 -29.88110 -29.17940 -27.47755 -26.17409 -25.84462 -25.09388 -23.87641 -23.20455 -22.44717 -20.50035 -20.00913 -19.03136 -18.06696 -17.93850 -17.20561 -17.14532 -16.85589 -16.66477 -16.22942 -15.78264 -15.26566 -15.08785 -14.94838 -14.31364 -14.15735 -13.97862 -13.81597 -13.40705 -13.37036 -13.21966 -13.03002 -12.73349 -12.36555 -12.26133 -12.01825 -11.83724 -11.67149 -10.98061 -10.90340 -10.82817 -10.77748 -10.69784 -10.56138 -10.43699 -10.11014 -10.03249 -9.90376 -9.80405 -9.35662 -9.11663 -8.77223 -8.67240 -8.04237 -6.22261 -4.24823 1.11360 1.77875 1.79244 2.56703 2.79972 3.19291 3.19809 3.24665 3.28897 3.31032 3.67202 3.84332 3.93962 4.09719 4.24347 4.29476 4.37460 4.47122 4.60962 4.74875 4.77248 4.99429 5.06901 5.16892 5.29398 5.40432 5.48240 5.50589 5.59545 5.72680 5.73051 5.78046 5.87942 5.93634 5.95194 6.05079 6.12740 6.14173 6.24956 6.33341 6.42213 6.54756 7.13799 7.51656 7.53493 7.61375 8.04214 8.30785 8.39107 8.62922 8.81630 9.38820 10.89721 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.002608 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.295261 B =10733.506241 C =12039.992347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.306 5.306 3 C 0.189 3.811 4 N -0.481 5.481 5 C 0.153 3.847 6 C 0.644 3.356 7 O -0.516 6.516 8 N -0.626 5.626 9 C 0.153 3.847 10 C -0.157 4.157 11 C -0.116 4.116 12 C -0.141 4.141 13 H 0.125 0.875 14 C 0.561 3.439 15 O -0.554 6.554 16 N -0.640 5.640 17 C 0.086 3.914 18 C -0.007 4.007 19 C -0.512 4.512 20 H 0.080 0.920 21 C 0.077 3.923 22 N -0.892 5.892 23 Si 0.876 3.124 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.261 1.261 27 C 0.115 3.885 28 C 0.145 3.855 29 N -0.253 5.253 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.266 0.734 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 8.310 -21.673 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.102 5.102 3 C -0.106 4.106 4 N -0.207 5.207 5 C -0.127 4.127 6 C 0.429 3.571 7 O -0.389 6.389 8 N -0.361 5.361 9 C 0.030 3.970 10 C -0.159 4.159 11 C -0.154 4.154 12 C -0.162 4.162 13 H 0.143 0.857 14 C 0.351 3.649 15 O -0.434 6.434 16 N -0.373 5.373 17 C -0.037 4.037 18 C -0.027 4.027 19 C -0.550 4.550 20 H 0.098 0.902 21 C -0.127 4.127 22 N -0.528 5.528 23 Si 0.703 3.297 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.185 1.185 27 C -0.007 4.007 28 C 0.024 3.976 29 N -0.092 5.092 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.243 0.757 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.128 0.872 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.972 6.548 -21.945 28.504 hybrid contribution -1.193 1.208 0.183 1.707 sum -18.165 7.756 -21.762 29.389 Atomic orbital electron populations 1.22263 0.72128 1.05979 1.05153 1.47404 1.09385 1.03855 1.49510 1.26533 0.85903 0.95996 1.02195 1.71310 1.20214 1.09404 1.19727 1.23585 0.91834 0.89397 1.07908 1.15541 0.79181 0.85241 0.77175 1.90854 1.84550 1.13426 1.50048 1.48965 1.04004 1.11186 1.71905 1.22510 0.88623 0.85617 1.00245 1.21972 0.96107 0.99372 0.98446 1.22781 0.92966 1.02108 0.97592 1.21969 1.04890 0.99635 0.89708 0.85707 1.19037 0.77585 0.88903 0.79410 1.90604 1.56903 1.26625 1.69259 1.49885 1.60792 1.14061 1.12603 1.23974 1.00459 0.91154 0.88066 1.20807 0.98141 0.91566 0.92183 1.20765 1.06770 1.22180 1.05270 0.90188 1.25008 0.96419 0.96560 0.94694 1.69892 1.36150 1.34836 1.11939 0.86890 0.83886 0.79902 0.79066 1.20195 1.21229 1.18521 1.23123 0.99095 0.95291 0.83215 1.22603 0.76630 0.98057 1.00311 1.74364 1.02796 1.13248 1.18824 0.89008 0.87910 0.88135 0.75692 0.88751 0.89057 0.87544 0.87009 0.89565 0.92374 0.92238 0.92360 0.92019 0.90074 0.87213 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.22 11.38 59.84 0.68 0.90 16 2 N -0.31 -2.54 3.72 -69.40 -0.26 -2.79 16 3 C 0.19 1.40 12.62 -90.48 -1.14 0.26 16 4 N -0.48 -5.54 9.88 -12.36 -0.12 -5.67 16 5 C 0.15 2.22 7.93 -156.36 -1.24 0.98 16 6 C 0.64 10.86 8.08 -12.31 -0.10 10.77 16 7 O -0.52 -10.50 17.86 5.32 0.09 -10.41 16 8 N -0.63 -9.07 3.69 -185.43 -0.68 -9.76 16 9 C 0.15 1.65 7.79 -7.50 -0.06 1.59 16 10 C -0.16 -1.91 3.15 -155.71 -0.49 -2.40 16 11 C -0.12 -1.20 10.24 -27.09 -0.28 -1.48 16 12 C -0.14 -1.97 6.02 -92.12 -0.55 -2.53 16 13 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 14 C 0.56 10.39 7.87 -10.99 -0.09 10.31 16 15 O -0.55 -11.73 15.03 5.56 0.08 -11.65 16 16 N -0.64 -12.34 3.69 -185.02 -0.68 -13.02 16 17 C 0.09 1.65 7.43 -8.36 -0.06 1.59 16 18 C -0.01 -0.16 2.97 -91.11 -0.27 -0.43 16 19 C -0.51 -13.18 9.38 -34.44 -0.32 -13.50 16 20 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 21 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 23 Si 0.88 19.84 27.15 -169.99 -4.62 15.22 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.26 -5.48 5.72 56.52 0.32 -5.16 16 27 C 0.11 2.31 8.17 -8.48 -0.07 2.24 16 28 C 0.15 2.01 8.20 -7.62 -0.06 1.95 16 29 N -0.25 -3.41 12.08 32.07 0.39 -3.02 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 -0.09 8.14 -51.93 -0.42 -0.52 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.23 0.43 8.06 -52.49 -0.42 0.00 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.99 7.46 -51.93 -0.39 0.60 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 39 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 40 H 0.06 1.32 7.03 -51.93 -0.37 0.96 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 44 H 0.11 1.92 5.98 -51.93 -0.31 1.61 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -37.55 385.20 -9.51 -47.06 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.14 Total: 0.81 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -4.15 Total: 12.18 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.59 Total: -59.02 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.62 Total: 15.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.55 -9.51 -47.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269779867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.970 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds