Wall clock time and date at job start Wed Apr 1 2020 03:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34590 * 125.75384 * 2 1 4 4 N 1.30871 * 107.62698 * 179.75167 * 3 2 1 5 5 C 1.34548 * 107.26664 * 0.41906 * 4 3 2 6 6 C 1.47876 * 126.04885 * 179.83292 * 5 4 3 7 7 O 1.21553 * 120.00223 * 179.69306 * 6 5 4 8 8 N 1.34777 * 119.99429 * 359.96853 * 6 5 4 9 9 C 1.47254 * 135.90387 * 359.36117 * 8 6 5 10 10 C 1.52865 * 87.60104 * 153.80812 * 9 8 6 11 11 C 1.52092 * 129.75588 * 164.46357 * 10 9 8 12 12 C 1.52093 * 129.98241 * 246.48983 * 10 9 8 13 13 H 1.08998 * 117.52265 * 348.45063 * 12 10 9 14 14 C 1.50702 * 117.52349 * 133.55263 * 12 10 9 15 15 O 1.21276 * 119.99854 * 0.02562 * 14 12 10 16 16 N 1.34772 * 119.99968 * 180.02562 * 14 12 10 17 17 C 1.47071 * 136.05995 * 359.63115 * 16 14 12 18 18 C 1.53751 * 87.88827 * 152.96050 * 17 16 14 19 19 C 1.50701 * 114.26754 * 139.79162 * 18 17 16 20 20 H 1.08001 * 120.00112 * 266.48133 * 19 18 17 21 21 C 1.37881 * 120.00064 * 86.47163 * 19 18 17 22 22 N 1.31506 * 119.99859 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99724 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47113 * 89.99620 * 23 21 19 25 25 H 1.48497 * 109.46931 * 209.99532 * 23 21 19 26 26 H 1.48497 * 109.47238 * 329.99569 * 23 21 19 27 27 C 1.47073 * 136.05625 * 180.02562 * 16 14 12 28 28 C 1.47258 * 135.89818 * 179.72258 * 8 6 5 29 29 N 1.28857 * 125.74763 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47175 * 270.00516 * 1 2 3 31 31 H 1.09004 * 109.47151 * 30.00112 * 1 2 3 32 32 H 1.08993 * 109.47844 * 149.99917 * 1 2 3 33 33 H 1.07992 * 126.18329 * 0.03677 * 3 2 1 34 34 H 1.09007 * 113.51101 * 268.46930 * 9 8 6 35 35 H 1.08996 * 113.51443 * 39.05534 * 9 8 6 36 36 H 1.08996 * 117.52448 * 226.72320 * 11 10 9 37 37 H 1.08999 * 117.52593 * 11.88797 * 11 10 9 38 38 H 1.09000 * 113.46901 * 267.69765 * 17 16 14 39 39 H 1.09002 * 113.46299 * 38.13660 * 17 16 14 40 40 H 1.08997 * 114.39959 * 272.68174 * 18 17 16 41 41 H 0.97006 * 119.99872 * 180.02562 * 22 21 19 42 42 H 1.08999 * 113.46777 * 321.86592 * 27 16 14 43 43 H 1.09001 * 113.46458 * 92.24471 * 27 16 14 44 44 H 1.09004 * 113.51115 * 320.93987 * 28 8 6 45 45 H 1.08992 * 113.51642 * 91.46151 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 0.0054 5 6 3.4749 -0.6602 -0.0007 6 6 4.6574 -1.5483 -0.0012 7 8 4.5112 -2.7550 -0.0014 8 7 5.8971 -1.0195 0.0041 9 6 6.4679 0.3378 -0.0004 10 6 7.7017 -0.2481 0.6859 11 6 9.0913 0.3449 0.8605 12 6 8.2452 -0.0125 2.0867 13 1 7.8181 0.8096 2.6610 14 6 8.6538 -1.2219 2.8877 15 8 8.5439 -2.3311 2.4099 16 7 9.1414 -1.0707 4.1350 17 6 9.4243 0.0603 5.0317 18 6 9.2063 -0.8970 6.2149 19 6 10.1770 -0.7074 7.3520 20 1 11.0794 -1.2991 7.3959 21 6 9.9131 0.2216 8.3361 22 7 10.7605 0.3873 9.3280 23 14 8.3521 1.2447 8.2602 24 1 7.2622 0.5389 8.9809 25 1 8.5935 2.5640 8.8974 26 1 7.9595 1.4443 6.8421 27 6 9.6314 -1.9637 5.1960 28 6 7.2718 -1.5474 0.0104 29 7 2.2177 -1.0458 -0.0005 30 1 -0.3634 0.0001 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.9165 2.1189 0.0006 34 1 6.6680 0.7221 -1.0007 35 1 5.9167 1.0435 0.6211 36 1 9.9441 -0.2947 0.6334 37 1 9.2206 1.4021 0.6286 38 1 10.4468 0.4298 4.9550 39 1 8.6822 0.8565 4.9733 40 1 8.1699 -0.9794 6.5424 41 1 10.5747 1.0407 10.0205 42 1 9.0659 -2.8919 5.2775 43 1 10.7084 -2.1281 5.1619 44 1 7.3967 -2.4275 0.6412 45 1 7.6914 -1.6799 -0.9867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269779867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:39 Heat of formation + Delta-G solvation = 123.289277 kcal Electronic energy + Delta-G solvation = -29431.897356 eV Core-core repulsion = 25262.167936 eV Total energy + Delta-G solvation = -4169.729421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.47935 -41.95095 -40.92872 -39.59536 -38.49416 -35.80074 -35.42867 -34.66034 -32.83286 -31.49848 -30.16719 -28.20992 -27.48873 -27.08370 -26.74081 -24.76441 -24.41021 -23.07660 -21.85105 -21.19567 -20.23124 -19.36781 -19.10602 -18.78303 -18.21408 -17.85152 -17.59326 -17.20010 -16.80012 -16.69551 -16.54196 -15.85039 -15.80764 -15.44712 -15.01975 -14.81396 -14.73276 -14.47802 -14.16050 -13.96650 -13.93858 -13.50502 -13.45344 -13.31313 -13.17209 -12.89010 -12.63041 -12.49802 -12.04620 -11.82733 -11.75709 -11.63518 -11.52494 -11.47859 -11.45203 -11.22637 -11.04865 -10.72998 -10.65467 -10.56591 -9.87160 -9.61097 -8.26911 -6.34578 0.22130 1.08486 1.13355 1.41631 1.44518 1.47590 1.54789 1.77048 1.86845 2.14537 2.39416 2.74308 2.93482 3.03266 3.05314 3.33959 3.39502 3.68461 3.80273 3.87790 4.02425 4.21528 4.25236 4.29117 4.36086 4.40180 4.47099 4.50074 4.59091 4.63280 4.65663 4.66723 4.74776 4.79524 4.83713 4.85754 4.89035 4.90907 4.96959 5.12142 5.27565 5.36521 5.60652 5.64489 6.28842 6.46124 6.70109 6.71247 6.87589 7.04069 7.14931 7.32860 8.88542 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.002608 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.295261 B =10733.506241 C =12039.992347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.208 3.792 4 N -0.499 5.499 5 C 0.124 3.876 6 C 0.630 3.370 7 O -0.576 6.576 8 N -0.630 5.630 9 C 0.167 3.833 10 C -0.154 4.154 11 C -0.078 4.078 12 C -0.165 4.165 13 H 0.143 0.857 14 C 0.553 3.447 15 O -0.589 6.589 16 N -0.643 5.643 17 C 0.104 3.896 18 C -0.016 4.016 19 C -0.512 4.512 20 H 0.041 0.959 21 C 0.021 3.979 22 N -0.943 5.943 23 Si 0.940 3.060 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.228 1.228 27 C 0.113 3.887 28 C 0.135 3.865 29 N -0.290 5.290 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.095 0.905 33 H 0.284 0.716 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.156 0.844 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.268 0.732 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.882 12.762 -24.080 33.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.096 5.096 3 C -0.087 4.087 4 N -0.225 5.225 5 C -0.155 4.155 6 C 0.417 3.583 7 O -0.453 6.453 8 N -0.364 5.364 9 C 0.046 3.954 10 C -0.156 4.156 11 C -0.116 4.116 12 C -0.186 4.186 13 H 0.160 0.840 14 C 0.345 3.655 15 O -0.471 6.471 16 N -0.376 5.376 17 C -0.018 4.018 18 C -0.036 4.036 19 C -0.551 4.551 20 H 0.059 0.941 21 C -0.178 4.178 22 N -0.582 5.582 23 Si 0.763 3.237 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.151 1.151 27 C -0.010 4.010 28 C 0.013 3.987 29 N -0.132 5.132 30 H 0.122 0.878 31 H 0.166 0.834 32 H 0.114 0.886 33 H 0.300 0.700 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.174 0.826 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.203 11.046 -24.383 32.944 hybrid contribution -0.521 -0.274 0.929 1.100 sum -19.724 10.773 -23.454 32.484 Atomic orbital electron populations 1.22774 0.69041 1.08021 1.06604 1.47822 1.10938 1.02984 1.47815 1.27599 0.84515 0.97609 0.98939 1.71222 1.22681 1.07659 1.20915 1.23152 0.91300 0.90438 1.10570 1.16062 0.80569 0.85102 0.76547 1.90790 1.85658 1.15865 1.53014 1.49185 1.03513 1.13182 1.70495 1.22705 0.86941 0.83753 1.01967 1.21937 0.98201 0.98394 0.97037 1.23007 0.91313 1.04334 0.92899 1.22028 1.08002 0.98121 0.90439 0.83969 1.19951 0.76393 0.90094 0.79024 1.90611 1.58048 1.28635 1.69851 1.49897 1.61152 1.13477 1.13053 1.23704 1.01530 0.90810 0.85806 1.20727 0.96994 0.93917 0.91921 1.20896 1.06149 1.21244 1.06764 0.94071 1.25861 0.99844 0.97967 0.94132 1.70037 1.38658 1.36249 1.13212 0.85863 0.79175 0.77845 0.80793 1.20567 1.21017 1.15097 1.23003 0.99106 0.95092 0.83804 1.22721 0.77187 0.97500 1.01271 1.74267 1.03185 1.15996 1.19765 0.87783 0.83399 0.88648 0.70047 0.85233 0.88495 0.87791 0.82633 0.89030 0.90029 0.92201 0.92295 0.92594 0.90142 0.91679 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.38 127.77 1.45 1.61 16 2 N -0.30 -4.24 3.72 -373.47 -1.39 -5.63 16 3 C 0.21 2.27 12.62 180.30 2.27 4.54 16 4 N -0.50 -10.28 9.88 -193.03 -1.91 -12.18 16 5 C 0.12 3.59 7.93 137.13 1.09 4.67 16 6 C 0.63 22.13 8.08 86.80 0.70 22.83 16 7 O -0.58 -25.26 17.86 -3.88 -0.07 -25.33 16 8 N -0.63 -18.10 3.69 -858.86 -3.17 -21.27 16 9 C 0.17 3.08 7.79 83.73 0.65 3.73 16 10 C -0.15 -3.32 3.15 -52.95 -0.17 -3.49 16 11 C -0.08 -1.27 10.24 30.36 0.31 -0.95 16 12 C -0.17 -4.15 6.02 -11.77 -0.07 -4.22 16 13 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.55 20.08 7.87 87.66 0.69 20.77 16 15 O -0.59 -25.60 15.03 -3.02 -0.05 -25.65 16 16 N -0.64 -24.16 3.69 -857.66 -3.16 -27.32 16 17 C 0.10 3.74 7.43 83.27 0.62 4.36 16 18 C -0.02 -0.69 2.97 -11.11 -0.03 -0.73 16 19 C -0.51 -26.94 9.38 25.60 0.24 -26.70 16 20 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 21 C 0.02 1.10 5.47 84.66 0.46 1.57 16 22 N -0.94 -55.38 13.96 21.45 0.30 -55.08 16 23 Si 0.94 40.06 27.15 68.60 1.86 41.92 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.23 -8.43 5.72 99.48 0.57 -7.86 16 27 C 0.11 4.61 8.17 83.19 0.68 5.29 16 28 C 0.13 3.70 8.20 83.65 0.69 4.39 16 29 N -0.29 -7.78 12.08 -52.44 -0.63 -8.41 16 30 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.15 -1.03 8.14 -2.39 -0.02 -1.05 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.28 -0.74 8.06 -2.91 -0.02 -0.76 16 34 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.10 1.74 7.46 -2.39 -0.02 1.72 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 3.23 8.10 -2.39 -0.02 3.21 16 39 H 0.08 2.59 7.15 -2.39 -0.02 2.57 16 40 H 0.06 2.60 7.03 -2.39 -0.02 2.58 16 41 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 44 H 0.06 2.41 5.98 -2.39 -0.01 2.40 16 45 H 0.12 2.51 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -91.02 385.20 2.26 -88.76 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.89 Total: 12.53 kcal Atomic # 6 Polarization: 28.09 SS G_CDS: 9.59 Total: 37.67 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -9.96 Total: -129.90 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.11 Total: -50.98 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.86 Total: 41.92 kcal Total: -91.02 2.26 -88.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269779867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.051 kcal (2) G-P(sol) polarization free energy of solvation -91.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds