Wall clock time and date at job start Wed Apr 1 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35452 * 124.79315 * 2 1 4 4 C 1.36391 * 109.77286 * 179.97438 * 3 2 1 5 5 C 1.46896 * 126.76101 * 179.97438 * 4 3 2 6 6 O 1.21677 * 119.99922 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00165 * 0.02562 * 5 4 3 8 8 C 1.46506 * 120.00027 * 179.97438 * 7 5 4 9 9 H 1.08991 * 109.47337 * 324.99812 * 8 7 5 10 10 C 1.53001 * 109.47056 * 204.99842 * 8 7 5 11 11 N 1.46500 * 109.47340 * 55.00285 * 10 8 7 12 12 C 1.36927 * 120.00396 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99972 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00483 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99418 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00107 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47435 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46971 * 120.00151 * 16 14 12 19 19 H 1.48506 * 109.47140 * 239.99858 * 16 14 12 20 20 C 1.52998 * 109.46899 * 84.99986 * 8 7 5 21 21 C 1.52999 * 117.50234 * 8.74854 * 20 8 7 22 22 C 1.52996 * 117.50053 * 300.08456 * 20 8 7 23 23 C 1.47444 * 106.47385 * 359.97438 * 4 3 2 24 24 C 1.39290 * 133.98080 * 180.02562 * 23 4 3 25 25 C 1.37949 * 119.64759 * 179.97438 * 24 23 4 26 26 F 1.35099 * 119.87146 * 179.97438 * 25 24 23 27 27 C 1.38943 * 120.25436 * 359.97438 * 25 24 23 28 28 C 1.37758 * 120.60684 * 0.04332 * 27 25 24 29 29 C 1.38054 * 124.79121 * 179.70340 * 2 1 3 30 30 H 1.09002 * 109.47391 * 90.02040 * 1 2 3 31 31 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 33 33 H 1.08002 * 125.11467 * 359.97438 * 3 2 1 34 34 H 0.97006 * 120.00252 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.46951 * 175.00442 * 10 8 7 36 36 H 1.09001 * 109.47251 * 294.99850 * 10 8 7 37 37 H 0.97001 * 119.99767 * 359.97438 * 11 10 8 38 38 H 0.97002 * 119.99780 * 180.02562 * 15 14 12 39 39 H 1.09001 * 115.55232 * 154.41674 * 20 8 7 40 40 H 1.09002 * 117.49572 * 359.97438 * 21 20 8 41 41 H 1.08999 * 117.50456 * 145.01990 * 21 20 8 42 42 H 1.08998 * 117.50141 * 214.97954 * 22 20 8 43 43 H 1.09001 * 117.49832 * 0.02562 * 22 20 8 44 44 H 1.08000 * 120.17256 * 359.93287 * 24 23 4 45 45 H 1.08002 * 119.69859 * 180.02562 * 27 25 24 46 46 H 1.07996 * 120.01849 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5552 0.7589 0.0006 5 6 4.7093 1.6677 0.0002 6 8 5.8392 1.2162 0.0004 7 7 4.5167 3.0016 -0.0002 8 6 5.6677 3.9079 0.0000 9 1 6.4737 3.4716 0.5899 10 6 5.2594 5.2508 0.6091 11 7 4.6895 5.0300 1.9405 12 6 4.2501 6.0938 2.6822 13 1 4.3239 7.0958 2.2858 14 6 3.7096 5.8847 3.9436 15 7 3.6191 4.6636 4.4264 16 14 3.1108 7.3361 4.9556 17 1 3.3218 8.5923 4.1925 18 1 1.6641 7.1723 5.2482 19 1 3.8698 7.3973 6.2306 20 6 6.1468 4.1242 -1.4368 21 6 5.2715 3.5726 -2.5640 22 6 6.6000 2.8927 -2.2234 23 6 3.5926 -0.7151 0.0016 24 6 4.6191 -1.6566 0.0029 25 6 4.3116 -3.0014 0.0042 26 9 5.3037 -3.9185 0.0050 27 6 2.9856 -3.4163 0.0046 28 6 1.9621 -2.4942 0.0029 29 6 2.2527 -1.1337 0.0059 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 1.8669 2.1266 -0.0004 34 1 3.6159 3.3616 0.0001 35 1 6.1355 5.8940 0.6909 36 1 4.5163 5.7285 -0.0295 37 1 4.6228 4.1301 2.2964 38 1 3.2411 4.5173 5.3077 39 1 6.6732 5.0607 -1.6210 40 1 4.3545 3.0552 -2.2818 41 1 5.2224 4.1459 -3.4897 42 1 7.4243 3.0190 -2.9252 43 1 6.5565 1.9282 -1.7173 44 1 5.6503 -1.3354 0.0024 45 1 2.7551 -4.4714 0.0060 46 1 0.9348 -2.8273 0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276602625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:56 Heat of formation + Delta-G solvation = 26.070874 kcal Electronic energy + Delta-G solvation = -30152.916010 eV Core-core repulsion = 25959.050921 eV Total energy + Delta-G solvation = -4193.865089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -48.78015 -41.64389 -39.61622 -37.02038 -36.89160 -34.86469 -33.37629 -32.93770 -31.17307 -30.23881 -29.25608 -28.09787 -26.63294 -24.08918 -23.24886 -22.74186 -22.17592 -21.44876 -21.43596 -19.94028 -19.47116 -17.89408 -17.42976 -17.15519 -16.53688 -15.98791 -15.77747 -15.69478 -15.56515 -15.31368 -15.16068 -14.64821 -14.25986 -14.10673 -13.47838 -13.37886 -13.33733 -13.26117 -12.97724 -12.94235 -12.74941 -12.71289 -12.49442 -12.03410 -11.58882 -11.33727 -11.24378 -11.12096 -11.05349 -10.89895 -10.85591 -10.18784 -10.05645 -9.80261 -9.77586 -9.55975 -9.48066 -8.93765 -8.57576 -8.33579 -7.79868 -6.97432 -5.79924 -3.09703 0.78576 1.24764 1.96689 2.46918 3.39329 3.41623 3.45873 3.47928 3.53125 3.86053 4.13545 4.20684 4.38144 4.42162 4.54400 4.61140 4.80240 4.86593 4.97355 5.06252 5.11691 5.20275 5.25062 5.27818 5.31771 5.50184 5.52783 5.57167 5.67571 5.80461 5.85372 5.90539 6.06216 6.06982 6.08659 6.13002 6.27868 6.37185 6.45948 6.51695 6.53923 6.62743 6.72845 6.91111 6.94457 7.02060 7.66732 7.95772 8.37700 8.66276 9.49751 10.06239 10.41872 11.42171 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.003335 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.598438 B = 8393.824139 C = 9784.656356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.470 5.470 3 C 0.120 3.880 4 C -0.221 4.221 5 C 0.592 3.408 6 O -0.544 6.544 7 N -0.707 5.707 8 C 0.171 3.829 9 H 0.092 0.908 10 C 0.148 3.852 11 N -0.732 5.732 12 C -0.241 4.241 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.187 4.187 23 C -0.035 4.035 24 C -0.094 4.094 25 C 0.072 3.928 26 F -0.142 7.142 27 C -0.135 4.135 28 C -0.096 4.096 29 C 0.076 3.924 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.181 0.819 34 H 0.400 0.600 35 H 0.034 0.966 36 H 0.026 0.974 37 H 0.386 0.614 38 H 0.254 0.746 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -12.410 -14.267 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.151 5.151 3 C -0.012 4.012 4 C -0.231 4.231 5 C 0.380 3.620 6 O -0.423 6.423 7 N -0.357 5.357 8 C 0.066 3.934 9 H 0.110 0.890 10 C 0.020 3.980 11 N -0.377 5.377 12 C -0.372 4.372 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.578 5.578 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.219 1.219 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.223 4.223 23 C -0.040 4.040 24 C -0.114 4.114 25 C 0.052 3.948 26 F -0.121 7.121 27 C -0.155 4.155 28 C -0.116 4.116 29 C -0.029 4.029 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.198 0.802 34 H 0.235 0.765 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.221 0.779 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.164 0.836 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.454 -12.568 -14.206 20.035 hybrid contribution -0.787 0.690 0.836 1.339 sum -7.241 -11.879 -13.370 19.295 Atomic orbital electron populations 1.22105 0.76323 1.05025 1.03441 1.43568 1.06472 1.04135 1.60971 1.22229 0.89829 0.91702 0.97390 1.20035 0.92338 0.91974 1.18748 1.17086 0.87617 0.81614 0.75641 1.90687 1.23922 1.76765 1.50911 1.45778 1.10247 1.05097 1.74586 1.20724 0.88583 0.90702 0.93422 0.89025 1.20912 0.96756 0.92423 0.87917 1.42369 1.73873 1.07649 1.13773 1.19257 1.32791 0.88100 0.97057 0.91112 1.24739 1.02048 0.96364 0.97648 1.69687 1.51024 1.18753 1.18345 0.86143 0.78055 0.81763 0.80359 1.20562 1.21971 1.21865 1.22696 1.04246 0.98350 0.92704 1.22869 0.95483 1.04440 0.98668 1.23345 0.97003 0.98932 1.03050 1.18418 0.91206 0.91756 1.02612 1.20592 1.00802 0.89805 1.00163 1.17349 0.84889 0.86072 1.06535 1.91479 1.60608 1.65666 1.94343 1.20714 0.90501 1.00208 1.04095 1.19759 0.99333 0.88496 1.04032 1.18252 0.89855 0.88312 1.06435 0.90722 0.89079 0.89708 0.80153 0.76506 0.94846 0.95665 0.77928 0.93581 0.87395 0.89041 0.89702 0.89891 0.86378 0.83555 0.84489 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.99 59.85 0.66 1.09 16 2 N -0.47 -4.89 3.15 -121.57 -0.38 -5.27 16 3 C 0.12 1.41 10.76 -16.62 -0.18 1.23 16 4 C -0.22 -3.30 6.27 -103.31 -0.65 -3.94 16 5 C 0.59 10.00 6.63 -12.76 -0.08 9.92 16 6 O -0.54 -10.61 13.18 5.21 0.07 -10.54 16 7 N -0.71 -11.13 3.04 -55.04 -0.17 -11.30 16 8 C 0.17 2.86 2.59 -67.93 -0.18 2.69 16 9 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 10 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 11 N -0.73 -17.69 5.43 -59.91 -0.33 -18.01 16 12 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 13 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 16 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C -0.16 -2.29 5.70 -90.62 -0.52 -2.81 16 21 C -0.18 -2.31 9.74 -26.69 -0.26 -2.57 16 22 C -0.19 -2.67 9.83 -26.69 -0.26 -2.93 16 23 C -0.04 -0.52 6.27 -104.95 -0.66 -1.18 16 24 C -0.09 -1.41 9.83 -39.30 -0.39 -1.79 16 25 C 0.07 0.95 7.29 -39.43 -0.29 0.66 16 26 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 27 C -0.14 -1.43 9.99 -39.50 -0.39 -1.83 16 28 C -0.10 -0.96 9.91 -39.43 -0.39 -1.35 16 29 C 0.08 0.92 6.79 -83.93 -0.57 0.35 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.08 0.40 8.02 -51.93 -0.42 -0.01 16 33 H 0.18 1.65 7.38 -52.49 -0.39 1.26 16 34 H 0.40 5.80 7.48 -40.82 -0.31 5.49 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.39 10.05 7.33 -40.82 -0.30 9.75 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 1.43 8.11 -51.93 -0.42 1.00 16 40 H 0.09 1.20 6.67 -51.93 -0.35 0.86 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.12 1.98 5.01 -51.93 -0.26 1.72 16 44 H 0.15 2.33 7.45 -52.49 -0.39 1.94 16 45 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 0.87 8.01 -52.49 -0.42 0.45 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -33.29 385.95 -9.82 -43.11 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.15 Total: 14.76 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -4.43 Total: -6.72 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.15 Total: -61.36 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.29 -9.82 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276602625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.184 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds