Wall clock time and date at job start Wed Apr 1 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35452 * 124.79315 * 2 1 4 4 C 1.36391 * 109.77286 * 179.97438 * 3 2 1 5 5 C 1.46896 * 126.76101 * 179.97438 * 4 3 2 6 6 O 1.21677 * 119.99922 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00165 * 0.02562 * 5 4 3 8 8 C 1.46506 * 120.00027 * 179.97438 * 7 5 4 9 9 H 1.08991 * 109.47337 * 324.99812 * 8 7 5 10 10 C 1.53001 * 109.47056 * 204.99842 * 8 7 5 11 11 N 1.46500 * 109.47340 * 55.00285 * 10 8 7 12 12 C 1.36927 * 120.00396 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99972 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00483 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99418 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00107 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47435 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46971 * 120.00151 * 16 14 12 19 19 H 1.48506 * 109.47140 * 239.99858 * 16 14 12 20 20 C 1.52998 * 109.46899 * 84.99986 * 8 7 5 21 21 C 1.52999 * 117.50234 * 8.74854 * 20 8 7 22 22 C 1.52996 * 117.50053 * 300.08456 * 20 8 7 23 23 C 1.47444 * 106.47385 * 359.97438 * 4 3 2 24 24 C 1.39290 * 133.98080 * 180.02562 * 23 4 3 25 25 C 1.37949 * 119.64759 * 179.97438 * 24 23 4 26 26 F 1.35099 * 119.87146 * 179.97438 * 25 24 23 27 27 C 1.38943 * 120.25436 * 359.97438 * 25 24 23 28 28 C 1.37758 * 120.60684 * 0.04332 * 27 25 24 29 29 C 1.38054 * 124.79121 * 179.70340 * 2 1 3 30 30 H 1.09002 * 109.47391 * 90.02040 * 1 2 3 31 31 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 33 33 H 1.08002 * 125.11467 * 359.97438 * 3 2 1 34 34 H 0.97006 * 120.00252 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.46951 * 175.00442 * 10 8 7 36 36 H 1.09001 * 109.47251 * 294.99850 * 10 8 7 37 37 H 0.97001 * 119.99767 * 359.97438 * 11 10 8 38 38 H 0.97002 * 119.99780 * 180.02562 * 15 14 12 39 39 H 1.09001 * 115.55232 * 154.41674 * 20 8 7 40 40 H 1.09002 * 117.49572 * 359.97438 * 21 20 8 41 41 H 1.08999 * 117.50456 * 145.01990 * 21 20 8 42 42 H 1.08998 * 117.50141 * 214.97954 * 22 20 8 43 43 H 1.09001 * 117.49832 * 0.02562 * 22 20 8 44 44 H 1.08000 * 120.17256 * 359.93287 * 24 23 4 45 45 H 1.08002 * 119.69859 * 180.02562 * 27 25 24 46 46 H 1.07996 * 120.01849 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5552 0.7589 0.0006 5 6 4.7093 1.6677 0.0002 6 8 5.8392 1.2162 0.0004 7 7 4.5167 3.0016 -0.0002 8 6 5.6677 3.9079 0.0000 9 1 6.4737 3.4716 0.5899 10 6 5.2594 5.2508 0.6091 11 7 4.6895 5.0300 1.9405 12 6 4.2501 6.0938 2.6822 13 1 4.3239 7.0958 2.2858 14 6 3.7096 5.8847 3.9436 15 7 3.6191 4.6636 4.4264 16 14 3.1108 7.3361 4.9556 17 1 3.3218 8.5923 4.1925 18 1 1.6641 7.1723 5.2482 19 1 3.8698 7.3973 6.2306 20 6 6.1468 4.1242 -1.4368 21 6 5.2715 3.5726 -2.5640 22 6 6.6000 2.8927 -2.2234 23 6 3.5926 -0.7151 0.0016 24 6 4.6191 -1.6566 0.0029 25 6 4.3116 -3.0014 0.0042 26 9 5.3037 -3.9185 0.0050 27 6 2.9856 -3.4163 0.0046 28 6 1.9621 -2.4942 0.0029 29 6 2.2527 -1.1337 0.0059 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 1.8669 2.1266 -0.0004 34 1 3.6159 3.3616 0.0001 35 1 6.1355 5.8940 0.6909 36 1 4.5163 5.7285 -0.0295 37 1 4.6228 4.1301 2.2964 38 1 3.2411 4.5173 5.3077 39 1 6.6732 5.0607 -1.6210 40 1 4.3545 3.0552 -2.2818 41 1 5.2224 4.1459 -3.4897 42 1 7.4243 3.0190 -2.9252 43 1 6.5565 1.9282 -1.7173 44 1 5.6503 -1.3354 0.0024 45 1 2.7551 -4.4714 0.0060 46 1 0.9348 -2.8273 0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276602625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:54 Heat of formation + Delta-G solvation = 6.689164 kcal Electronic energy + Delta-G solvation = -30153.756464 eV Core-core repulsion = 25959.050921 eV Total energy + Delta-G solvation = -4194.705543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.84179 -42.57561 -40.89043 -38.19259 -37.91725 -36.52211 -34.79930 -33.97346 -32.94192 -31.13143 -30.42496 -29.46623 -27.49391 -25.91581 -24.22025 -23.86068 -23.40319 -22.90401 -22.36835 -21.11895 -20.70803 -19.29980 -18.70152 -18.41099 -17.53672 -17.21337 -17.00438 -16.81826 -16.69078 -16.40748 -16.21043 -16.05609 -15.50187 -15.20283 -15.08605 -14.96337 -14.61781 -14.35254 -14.17839 -13.82706 -13.68564 -13.64025 -13.48651 -13.18599 -13.10364 -12.84238 -12.71448 -12.63541 -12.29684 -12.04269 -12.02830 -12.01125 -11.81030 -11.26191 -10.98553 -10.85954 -10.75751 -10.72048 -9.90977 -9.28031 -8.98700 -8.75317 -7.91627 -5.21321 -0.17463 0.29322 0.92951 1.49063 1.51088 1.60320 1.67905 2.26950 2.37654 2.57579 2.75088 2.98884 3.23544 3.42796 3.53780 3.64624 3.67262 3.78170 3.98868 4.01874 4.13886 4.20452 4.21879 4.30685 4.41653 4.43595 4.50947 4.53520 4.57767 4.65910 4.71290 4.78189 4.85697 4.92138 4.94913 5.08248 5.14784 5.18399 5.19890 5.29765 5.42891 5.45081 5.53561 5.59022 5.66029 5.98376 6.14802 6.28395 6.70465 7.36105 7.39695 8.09440 8.33951 9.31378 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.003335 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.598438 B = 8393.824139 C = 9784.656356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.460 5.460 3 C 0.143 3.857 4 C -0.268 4.268 5 C 0.588 3.412 6 O -0.583 6.583 7 N -0.700 5.700 8 C 0.180 3.820 9 H 0.056 0.944 10 C 0.152 3.848 11 N -0.742 5.742 12 C -0.240 4.240 13 H 0.080 0.920 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.971 3.029 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.301 1.301 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.196 4.196 23 C -0.064 4.064 24 C -0.129 4.129 25 C 0.064 3.936 26 F -0.150 7.150 27 C -0.133 4.133 28 C -0.075 4.075 29 C 0.068 3.932 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.207 0.793 34 H 0.407 0.593 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.171 0.829 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 -11.943 -15.660 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.139 5.139 3 C 0.008 3.992 4 C -0.279 4.279 5 C 0.379 3.621 6 O -0.465 6.465 7 N -0.350 5.350 8 C 0.075 3.925 9 H 0.074 0.926 10 C 0.025 3.975 11 N -0.385 5.385 12 C -0.372 4.372 13 H 0.098 0.902 14 C -0.264 4.264 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.189 1.189 18 H -0.219 1.219 19 H -0.228 1.228 20 C -0.183 4.183 21 C -0.194 4.194 22 C -0.232 4.232 23 C -0.069 4.069 24 C -0.149 4.149 25 C 0.044 3.956 26 F -0.129 7.129 27 C -0.152 4.152 28 C -0.095 4.095 29 C -0.037 4.037 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.224 0.776 34 H 0.243 0.757 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.133 0.867 45 H 0.189 0.811 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.852 -12.081 -15.645 22.086 hybrid contribution 0.246 0.504 1.222 1.344 sum -9.606 -11.577 -14.424 20.841 Atomic orbital electron populations 1.22532 0.73099 1.06668 1.05458 1.43885 1.08156 1.02988 1.58879 1.22550 0.88879 0.93161 0.94577 1.19975 0.93043 0.92031 1.22819 1.17457 0.87884 0.81972 0.74824 1.90661 1.25663 1.77369 1.52825 1.45644 1.10190 1.04724 1.74458 1.20454 0.87980 0.89450 0.94642 0.92599 1.21018 0.96823 0.93670 0.85948 1.42539 1.74053 1.06512 1.15445 1.19663 1.31280 0.89009 0.97222 0.90250 1.25511 1.03211 0.98677 0.99019 1.69853 1.52728 1.20838 1.18453 0.85109 0.77099 0.79407 0.78322 1.18900 1.21884 1.22831 1.22617 1.05360 0.99026 0.91298 1.22943 0.94471 1.03257 0.98750 1.23263 0.98877 0.97611 1.03491 1.18669 0.92769 0.91872 1.03598 1.20479 0.99776 0.91248 1.03394 1.17618 0.86114 0.85241 1.06638 1.91451 1.61317 1.65688 1.94422 1.21081 0.88940 1.02158 1.03039 1.20256 1.01264 0.87057 1.00923 1.18506 0.88913 0.89758 1.06507 0.88444 0.87898 0.87776 0.77593 0.75686 0.94651 0.93734 0.79403 0.94234 0.85665 0.89317 0.87102 0.88204 0.89304 0.86698 0.81131 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.99 127.77 1.40 1.88 16 2 N -0.46 -8.42 3.15 -538.55 -1.69 -10.11 16 3 C 0.14 3.22 10.76 83.70 0.90 4.12 16 4 C -0.27 -8.40 6.27 -19.02 -0.12 -8.51 16 5 C 0.59 21.38 6.63 86.51 0.57 21.95 16 6 O -0.58 -25.25 13.18 -4.27 -0.06 -25.31 16 7 N -0.70 -22.86 3.04 -446.29 -1.36 -24.22 16 8 C 0.18 6.24 2.59 44.99 0.12 6.36 16 9 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 10 C 0.15 5.76 5.80 86.38 0.50 6.26 16 11 N -0.74 -36.22 5.43 -343.45 -1.87 -38.09 16 12 C -0.24 -12.83 9.99 84.04 0.84 -11.99 16 13 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 14 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 15 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 16 Si 0.97 44.84 29.55 68.60 2.03 46.87 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 20 C -0.16 -4.62 5.70 -10.80 -0.06 -4.68 16 21 C -0.16 -3.88 9.74 30.62 0.30 -3.58 16 22 C -0.20 -5.69 9.83 30.62 0.30 -5.39 16 23 C -0.06 -2.01 6.27 -20.08 -0.13 -2.13 16 24 C -0.13 -4.24 9.83 22.45 0.22 -4.02 16 25 C 0.06 1.75 7.29 22.37 0.16 1.91 16 26 F -0.15 -4.29 17.26 44.97 0.78 -3.52 16 27 C -0.13 -2.54 9.99 22.32 0.22 -2.31 16 28 C -0.08 -1.26 9.91 22.37 0.22 -1.04 16 29 C 0.07 1.55 6.79 38.89 0.26 1.81 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.62 8.13 -2.39 -0.02 0.60 16 32 H 0.10 0.46 8.02 -2.38 -0.02 0.44 16 33 H 0.21 3.37 7.38 -2.91 -0.02 3.35 16 34 H 0.41 11.83 7.48 -92.70 -0.69 11.14 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.37 20.05 7.33 -92.71 -0.68 19.37 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.13 3.11 8.11 -2.39 -0.02 3.09 16 40 H 0.09 2.26 6.67 -2.39 -0.02 2.24 16 41 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.09 3.21 5.01 -2.39 -0.01 3.20 16 44 H 0.11 4.32 7.45 -2.91 -0.02 4.29 16 45 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 46 H 0.18 1.33 8.01 -2.91 -0.02 1.31 16 Total: -1.00 -76.85 385.95 3.96 -72.88 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.34 Total: 42.36 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 6.19 Total: -2.91 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -4.64 Total: -130.38 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.06 Total: -25.31 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -76.85 3.96 -72.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276602625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.573 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds