Wall clock time and date at job start Wed Apr 1 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 119.99973 * 2 1 4 4 C 1.52996 * 109.47177 * 270.00243 * 3 2 1 5 5 H 1.09002 * 109.47405 * 60.00174 * 4 3 2 6 6 O 1.42900 * 109.46981 * 299.99691 * 4 3 2 7 7 C 1.53003 * 109.47179 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47141 * 185.00010 * 7 4 3 9 9 C 1.36942 * 120.00089 * 179.97438 * 8 7 4 10 10 H 1.07999 * 119.99688 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99970 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00367 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47105 * 90.00063 * 13 11 9 15 15 H 1.48504 * 109.46862 * 209.99919 * 13 11 9 16 16 H 1.48504 * 109.47187 * 329.99753 * 13 11 9 17 17 C 1.34774 * 120.00074 * 180.02562 * 2 1 3 18 18 O 1.21605 * 120.00218 * 177.74702 * 17 2 1 19 19 C 1.47413 * 119.99873 * 357.75137 * 17 2 1 20 20 C 1.41335 * 126.40608 * 199.83688 * 19 17 2 21 21 N 1.30485 * 108.06105 * 179.85366 * 20 19 17 22 22 N 1.39930 * 108.91709 * 0.41239 * 21 20 19 23 23 C 1.40175 * 125.77319 * 179.70150 * 22 21 20 24 24 C 1.39271 * 120.48229 * 0.04023 * 23 22 21 25 25 C 1.38509 * 118.36183 * 180.02562 * 24 23 22 26 26 C 1.38269 * 119.23292 * 359.97438 * 25 24 23 27 27 N 1.31864 * 120.90696 * 0.02562 * 26 25 24 28 28 C 1.31820 * 121.80027 * 359.65926 * 27 26 25 29 29 C 1.34527 * 108.45765 * 359.73391 * 22 21 20 30 30 H 1.08999 * 109.47725 * 96.06120 * 1 2 3 31 31 H 1.09009 * 109.47151 * 216.05635 * 1 2 3 32 32 H 1.08998 * 109.47643 * 336.05925 * 1 2 3 33 33 H 1.09002 * 109.47053 * 30.00115 * 3 2 1 34 34 H 1.09002 * 109.46810 * 150.00053 * 3 2 1 35 35 H 0.96697 * 114.00360 * 299.99914 * 6 4 3 36 36 H 1.09002 * 109.46604 * 304.99472 * 7 4 3 37 37 H 1.08994 * 109.47391 * 64.99317 * 7 4 3 38 38 H 0.97001 * 120.00222 * 359.97438 * 8 7 4 39 39 H 0.96997 * 120.00180 * 179.97438 * 12 11 9 40 40 H 1.07993 * 125.97313 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.81658 * 359.97438 * 24 23 22 42 42 H 1.08001 * 120.37958 * 180.02562 * 25 24 23 43 43 H 1.07992 * 119.54736 * 180.02562 * 26 25 24 44 44 H 1.07996 * 119.66751 * 180.31833 * 28 27 26 45 45 H 1.08008 * 126.31140 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2247 0.7145 -2.1161 7 6 3.2180 3.0351 -1.4425 8 7 3.3578 3.5183 -2.8184 9 6 4.0121 4.6952 -3.0676 10 1 4.4246 5.2674 -2.2498 11 6 4.1451 5.1527 -4.3714 12 7 3.6428 4.4552 -5.3681 13 14 5.0382 6.7578 -4.7114 14 1 6.4825 6.4853 -4.9232 15 1 4.4705 7.3919 -5.9283 16 1 4.8716 7.6720 -3.5531 17 6 2.1388 -1.1672 -0.0005 18 8 3.3542 -1.1676 -0.0419 19 6 1.4026 -2.4433 0.0490 20 6 1.9231 -3.6973 0.4417 21 7 0.9645 -4.5784 0.3547 22 7 -0.1961 -3.9426 -0.1002 23 6 -1.4340 -4.5603 -0.3256 24 6 -1.5950 -5.9246 -0.0966 25 6 -2.8370 -6.4897 -0.3343 26 6 -3.8683 -5.6875 -0.7870 27 7 -3.6830 -4.3985 -0.9939 28 6 -2.5190 -3.8200 -0.7744 29 6 0.0773 -2.6385 -0.2853 30 1 -0.3634 -0.1085 -1.0219 31 1 -0.3634 -0.8309 0.6049 32 1 -0.3634 0.9392 0.4170 33 1 1.6083 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0872 0.5461 -1.7126 36 1 2.6709 3.7708 -0.8529 37 1 4.2061 2.8837 -1.0083 38 1 2.9870 3.0046 -3.5529 39 1 3.7355 4.7751 -6.2791 40 1 2.9365 -3.8920 0.7601 41 1 -0.7713 -6.5272 0.2568 42 1 -2.9982 -7.5444 -0.1673 43 1 -4.8389 -6.1227 -0.9736 44 1 -2.4070 -2.7604 -0.9507 45 1 -0.6129 -1.8831 -0.6312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278767129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:16 Heat of formation + Delta-G solvation = 71.635949 kcal Electronic energy + Delta-G solvation = -29115.140017 eV Core-core repulsion = 24943.170740 eV Total energy + Delta-G solvation = -4171.969277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28305 -40.55961 -39.55435 -37.16258 -35.40503 -34.58229 -33.94907 -32.91888 -31.59108 -30.98109 -30.05275 -29.01557 -27.25138 -25.71499 -24.58807 -24.47550 -23.00490 -21.86608 -21.51067 -21.04867 -20.00177 -18.32626 -17.40572 -17.18733 -17.12020 -16.55914 -16.36951 -16.20380 -15.67177 -15.55070 -15.05910 -14.71472 -14.56077 -14.38078 -14.24575 -13.89605 -13.67696 -13.60552 -13.46440 -13.07612 -12.88204 -12.82224 -12.47610 -12.15606 -12.10109 -11.54680 -11.34864 -11.24920 -10.90903 -10.78990 -10.63373 -10.35656 -10.24422 -10.13079 -10.02021 -9.73679 -9.63476 -9.56728 -8.86187 -8.77994 -8.49764 -6.88233 -5.71599 -3.00848 0.00060 0.52902 1.39583 1.66991 1.87602 2.90908 3.15015 3.23039 3.46219 3.50749 3.52718 3.70468 3.78850 3.99830 4.18851 4.29066 4.44118 4.51778 4.60525 4.73399 4.78300 4.83230 4.95017 4.99530 5.02510 5.13110 5.20658 5.32942 5.38204 5.39378 5.44101 5.57449 5.68968 5.76576 5.78459 5.98680 6.05368 6.27005 6.39047 6.45292 6.56705 6.78780 7.00794 7.24168 7.30747 7.72035 8.17615 8.28214 8.46860 9.57933 10.16445 10.51900 11.50852 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.001956 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.353355 B =14314.917771 C =15062.542588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.604 5.604 3 C 0.087 3.913 4 C 0.086 3.914 5 H 0.095 0.905 6 O -0.547 6.547 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 C 0.598 3.402 18 O -0.530 6.530 19 C -0.261 4.261 20 C 0.119 3.881 21 N -0.295 5.295 22 N -0.312 5.312 23 C 0.106 3.894 24 C -0.072 4.072 25 C -0.146 4.146 26 C 0.089 3.911 27 N -0.455 5.455 28 C 0.088 3.912 29 C 0.084 3.916 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.375 0.625 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.388 0.612 39 H 0.255 0.745 40 H 0.203 0.797 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 -22.482 15.988 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.336 5.336 3 C -0.036 4.036 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.386 3.614 18 O -0.407 6.407 19 C -0.275 4.275 20 C -0.069 4.069 21 N -0.113 5.113 22 N -0.085 5.085 23 C 0.012 3.988 24 C -0.100 4.100 25 C -0.166 4.166 26 C -0.069 4.069 27 N -0.163 5.163 28 C -0.073 4.073 29 C -0.062 4.062 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.223 0.777 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.219 0.781 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.183 0.817 44 H 0.180 0.820 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -17.052 -23.079 15.450 32.590 hybrid contribution 1.689 1.194 0.005 2.068 sum -15.364 -21.885 15.455 30.884 Atomic orbital electron populations 1.22294 0.80492 1.03734 1.01577 1.47455 1.06422 1.05956 1.73778 1.22316 0.98302 0.84104 0.98878 1.22484 0.95742 0.88335 0.90932 0.88732 1.86541 1.33168 1.58822 1.56728 1.21245 0.96826 0.92512 0.89715 1.42250 1.68028 1.25263 1.01452 1.19226 1.28095 0.97795 0.92164 0.91261 1.24763 1.01549 0.99068 0.95640 1.69681 1.50341 1.39243 0.98595 0.86182 0.79365 0.83245 0.77332 1.21716 1.21787 1.20796 1.17052 0.86525 0.81964 0.75882 1.90759 1.13101 1.86802 1.50008 1.20488 0.93586 0.96219 1.17194 1.24212 0.98951 0.88843 0.94942 1.77284 0.91020 1.21139 1.21818 1.45560 1.07919 1.06150 1.48919 1.18723 0.83403 0.93979 1.02735 1.21435 0.98865 0.92520 0.97167 1.22170 0.92684 1.02136 0.99654 1.22938 0.99733 0.89091 0.95093 1.67789 1.22047 1.12603 1.13831 1.22600 0.86875 1.00567 0.97213 1.23977 0.97429 0.86480 0.98286 0.92056 0.90872 0.90120 0.89516 0.89312 0.77742 0.95832 0.96087 0.77764 0.93527 0.78082 0.83091 0.83523 0.81749 0.82034 0.78408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 8.83 59.84 0.53 0.98 16 2 N -0.60 -6.89 2.83 -182.86 -0.52 -7.41 16 3 C 0.09 1.09 5.18 -4.05 -0.02 1.07 16 4 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 5 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 6 O -0.55 -10.40 12.04 -46.54 -0.56 -10.96 16 7 C 0.13 2.51 5.90 -4.04 -0.02 2.49 16 8 N -0.73 -18.96 5.55 -59.91 -0.33 -19.29 16 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 13 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.60 7.97 7.19 -12.53 -0.09 7.88 16 18 O -0.53 -8.74 15.21 -6.03 -0.09 -8.83 16 19 C -0.26 -2.90 5.81 -105.05 -0.61 -3.51 16 20 C 0.12 1.27 11.89 -16.95 -0.20 1.06 16 21 N -0.30 -3.17 11.85 30.88 0.37 -2.80 16 22 N -0.31 -2.96 3.77 -10.11 -0.04 -2.99 16 23 C 0.11 0.86 6.70 -83.45 -0.56 0.30 16 24 C -0.07 -0.50 9.77 -39.10 -0.38 -0.88 16 25 C -0.15 -0.70 10.10 -39.47 -0.40 -1.10 16 26 C 0.09 0.49 11.18 -17.53 -0.20 0.29 16 27 N -0.45 -3.52 10.35 -13.10 -0.14 -3.66 16 28 C 0.09 0.64 10.62 -17.35 -0.18 0.45 16 29 C 0.08 0.74 8.56 -16.43 -0.14 0.60 16 30 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 31 H 0.07 0.41 5.27 -51.92 -0.27 0.14 16 32 H 0.08 0.47 7.83 -51.93 -0.41 0.06 16 33 H 0.09 0.87 7.85 -51.93 -0.41 0.47 16 34 H 0.09 1.18 7.45 -51.93 -0.39 0.79 16 35 H 0.37 6.75 8.38 45.56 0.38 7.13 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.39 10.95 7.67 -40.82 -0.31 10.64 16 39 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.20 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.15 0.99 7.77 -52.49 -0.41 0.58 16 42 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 43 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.16 0.80 6.74 -52.49 -0.35 0.45 16 45 H 0.20 1.13 3.95 -52.48 -0.21 0.92 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -37.80 381.05 -7.32 -45.12 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -4.84 Total: 12.17 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.61 Total: 3.38 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.07 Total: -64.42 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.65 Total: -19.79 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.80 -7.32 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278767129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.757 kcal (2) G-P(sol) polarization free energy of solvation -37.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds