Wall clock time and date at job start Wed Apr 1 2020 04:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 119.99973 * 2 1 4 4 C 1.52996 * 109.47177 * 270.00243 * 3 2 1 5 5 H 1.09002 * 109.47405 * 60.00174 * 4 3 2 6 6 O 1.42900 * 109.46981 * 299.99691 * 4 3 2 7 7 C 1.53003 * 109.47179 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47141 * 185.00010 * 7 4 3 9 9 C 1.36942 * 120.00089 * 179.97438 * 8 7 4 10 10 H 1.07999 * 119.99688 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99970 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00367 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47105 * 90.00063 * 13 11 9 15 15 H 1.48504 * 109.46862 * 209.99919 * 13 11 9 16 16 H 1.48504 * 109.47187 * 329.99753 * 13 11 9 17 17 C 1.34774 * 120.00074 * 180.02562 * 2 1 3 18 18 O 1.21605 * 120.00218 * 177.74702 * 17 2 1 19 19 C 1.47413 * 119.99873 * 357.75137 * 17 2 1 20 20 C 1.41335 * 126.40608 * 199.83688 * 19 17 2 21 21 N 1.30485 * 108.06105 * 179.85366 * 20 19 17 22 22 N 1.39930 * 108.91709 * 0.41239 * 21 20 19 23 23 C 1.40175 * 125.77319 * 179.70150 * 22 21 20 24 24 C 1.39271 * 120.48229 * 0.04023 * 23 22 21 25 25 C 1.38509 * 118.36183 * 180.02562 * 24 23 22 26 26 C 1.38269 * 119.23292 * 359.97438 * 25 24 23 27 27 N 1.31864 * 120.90696 * 0.02562 * 26 25 24 28 28 C 1.31820 * 121.80027 * 359.65926 * 27 26 25 29 29 C 1.34527 * 108.45765 * 359.73391 * 22 21 20 30 30 H 1.08999 * 109.47725 * 96.06120 * 1 2 3 31 31 H 1.09009 * 109.47151 * 216.05635 * 1 2 3 32 32 H 1.08998 * 109.47643 * 336.05925 * 1 2 3 33 33 H 1.09002 * 109.47053 * 30.00115 * 3 2 1 34 34 H 1.09002 * 109.46810 * 150.00053 * 3 2 1 35 35 H 0.96697 * 114.00360 * 299.99914 * 6 4 3 36 36 H 1.09002 * 109.46604 * 304.99472 * 7 4 3 37 37 H 1.08994 * 109.47391 * 64.99317 * 7 4 3 38 38 H 0.97001 * 120.00222 * 359.97438 * 8 7 4 39 39 H 0.96997 * 120.00180 * 179.97438 * 12 11 9 40 40 H 1.07993 * 125.97313 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.81658 * 359.97438 * 24 23 22 42 42 H 1.08001 * 120.37958 * 180.02562 * 25 24 23 43 43 H 1.07992 * 119.54736 * 180.02562 * 26 25 24 44 44 H 1.07996 * 119.66751 * 180.31833 * 28 27 26 45 45 H 1.08008 * 126.31140 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2247 0.7145 -2.1161 7 6 3.2180 3.0351 -1.4425 8 7 3.3578 3.5183 -2.8184 9 6 4.0121 4.6952 -3.0676 10 1 4.4246 5.2674 -2.2498 11 6 4.1451 5.1527 -4.3714 12 7 3.6428 4.4552 -5.3681 13 14 5.0382 6.7578 -4.7114 14 1 6.4825 6.4853 -4.9232 15 1 4.4705 7.3919 -5.9283 16 1 4.8716 7.6720 -3.5531 17 6 2.1388 -1.1672 -0.0005 18 8 3.3542 -1.1676 -0.0419 19 6 1.4026 -2.4433 0.0490 20 6 1.9231 -3.6973 0.4417 21 7 0.9645 -4.5784 0.3547 22 7 -0.1961 -3.9426 -0.1002 23 6 -1.4340 -4.5603 -0.3256 24 6 -1.5950 -5.9246 -0.0966 25 6 -2.8370 -6.4897 -0.3343 26 6 -3.8683 -5.6875 -0.7870 27 7 -3.6830 -4.3985 -0.9939 28 6 -2.5190 -3.8200 -0.7744 29 6 0.0773 -2.6385 -0.2853 30 1 -0.3634 -0.1085 -1.0219 31 1 -0.3634 -0.8309 0.6049 32 1 -0.3634 0.9392 0.4170 33 1 1.6083 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0872 0.5461 -1.7126 36 1 2.6709 3.7708 -0.8529 37 1 4.2061 2.8837 -1.0083 38 1 2.9870 3.0046 -3.5529 39 1 3.7355 4.7751 -6.2791 40 1 2.9365 -3.8920 0.7601 41 1 -0.7713 -6.5272 0.2568 42 1 -2.9982 -7.5444 -0.1673 43 1 -4.8389 -6.1227 -0.9736 44 1 -2.4070 -2.7604 -0.9507 45 1 -0.6129 -1.8831 -0.6312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278767129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:15 Heat of formation + Delta-G solvation = 42.924214 kcal Electronic energy + Delta-G solvation = -29116.385051 eV Core-core repulsion = 24943.170740 eV Total energy + Delta-G solvation = -4173.214311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.98920 -41.14114 -40.47848 -38.53784 -36.46711 -35.85116 -35.20193 -33.41827 -33.21143 -32.19425 -30.74251 -30.23229 -28.11440 -27.11217 -25.39099 -25.07655 -24.52564 -22.92645 -22.41149 -22.14329 -20.80482 -19.21861 -18.99599 -18.00104 -17.94505 -17.70348 -17.19113 -16.93900 -16.61289 -16.45041 -16.31100 -16.11182 -15.93032 -15.22338 -15.02043 -14.95613 -14.73207 -14.54391 -14.32466 -14.20751 -14.03449 -13.82816 -13.64926 -13.24388 -13.00191 -12.84728 -12.76841 -12.58878 -12.15844 -12.11977 -12.00316 -11.92131 -11.80034 -11.16618 -10.97358 -10.89582 -10.83522 -10.69837 -10.32727 -9.60635 -9.35596 -9.00065 -7.94014 -5.23713 -0.55311 0.06969 0.70974 1.01287 1.09029 1.46783 1.49690 1.57854 2.04002 2.30146 2.56563 2.69201 3.09505 3.29250 3.37632 3.52496 3.54771 3.65970 3.75165 3.81219 3.89081 3.92803 4.11841 4.20389 4.26889 4.28118 4.30812 4.42337 4.48597 4.56749 4.59275 4.63639 4.79424 4.85625 4.87858 4.95756 5.01069 5.22400 5.28773 5.38084 5.47108 5.52903 5.80004 6.25624 6.26905 6.43031 6.78164 6.85183 7.23977 7.33146 8.10155 8.32527 9.29480 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.001956 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.353355 B =14314.917771 C =15062.542588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.602 5.602 3 C 0.098 3.902 4 C 0.095 3.905 5 H 0.092 0.908 6 O -0.567 6.567 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.246 4.246 10 H 0.078 0.922 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.977 3.023 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.265 1.265 17 C 0.592 3.408 18 O -0.574 6.574 19 C -0.286 4.286 20 C 0.110 3.890 21 N -0.312 5.312 22 N -0.310 5.310 23 C 0.080 3.920 24 C -0.082 4.082 25 C -0.137 4.137 26 C 0.089 3.911 27 N -0.479 5.479 28 C 0.086 3.914 29 C 0.101 3.899 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.376 0.624 36 H 0.043 0.957 37 H 0.021 0.979 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.209 0.791 41 H 0.149 0.851 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.180 0.820 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 -22.577 17.196 33.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.333 5.333 3 C -0.026 4.026 4 C 0.034 3.966 5 H 0.110 0.890 6 O -0.373 6.373 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.378 4.378 10 H 0.096 0.904 11 C -0.272 4.272 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.217 1.217 15 H -0.221 1.221 16 H -0.190 1.190 17 C 0.381 3.619 18 O -0.454 6.454 19 C -0.300 4.300 20 C -0.078 4.078 21 N -0.130 5.130 22 N -0.083 5.083 23 C -0.014 4.014 24 C -0.110 4.110 25 C -0.157 4.157 26 C -0.068 4.068 27 N -0.188 5.188 28 C -0.074 4.074 29 C -0.045 4.045 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.224 0.776 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.205 0.795 39 H 0.059 0.941 40 H 0.226 0.774 41 H 0.166 0.834 42 H 0.196 0.804 43 H 0.211 0.789 44 H 0.197 0.803 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.225 -23.187 16.722 34.451 hybrid contribution 2.207 1.093 -0.321 2.484 sum -17.018 -22.094 16.401 32.353 Atomic orbital electron populations 1.22617 0.77829 1.05811 1.02814 1.47518 1.08102 1.04874 1.72823 1.22118 0.99060 0.85509 0.95890 1.22450 0.94460 0.86238 0.93403 0.89033 1.86512 1.33538 1.59429 1.57841 1.21464 0.97536 0.94643 0.86793 1.42478 1.67771 1.24682 1.03463 1.19684 1.27174 0.98460 0.92489 0.90372 1.25651 1.03150 1.02804 0.95609 1.69852 1.52372 1.41205 0.98709 0.85085 0.77706 0.79313 0.77310 1.21650 1.22136 1.19007 1.17412 0.86231 0.83039 0.75192 1.90725 1.14962 1.87512 1.52185 1.20363 0.94651 0.95460 1.19574 1.24411 0.99439 0.88949 0.95012 1.77241 0.91554 1.21609 1.22604 1.45686 1.08058 1.06368 1.48190 1.18974 0.83106 0.94755 1.04581 1.21634 0.99807 0.92290 0.97227 1.22496 0.91427 1.03581 0.98183 1.23510 1.01077 0.88536 0.93637 1.67851 1.22237 1.13865 1.14808 1.22878 0.86466 1.01432 0.96619 1.24369 0.96933 0.86779 0.96451 0.91083 0.89095 0.87930 0.86183 0.90231 0.77624 0.93909 0.96144 0.79483 0.94069 0.77427 0.83359 0.80415 0.78923 0.80290 0.75460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 8.83 127.77 1.13 1.73 16 2 N -0.60 -12.88 2.83 -850.70 -2.41 -15.29 16 3 C 0.10 2.30 5.18 86.38 0.45 2.75 16 4 C 0.09 3.08 3.27 30.59 0.10 3.18 16 5 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 6 O -0.57 -21.95 12.04 -138.17 -1.66 -23.62 16 7 C 0.12 4.83 5.90 86.38 0.51 5.34 16 8 N -0.74 -38.94 5.55 -343.45 -1.91 -40.85 16 9 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 10 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 11 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 12 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 13 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.59 15.76 7.19 86.66 0.62 16.38 16 18 O -0.57 -19.55 15.21 6.76 0.10 -19.45 16 19 C -0.29 -6.31 5.81 -20.14 -0.12 -6.42 16 20 C 0.11 2.40 11.89 85.65 1.02 3.42 16 21 N -0.31 -6.72 11.85 -56.23 -0.67 -7.38 16 22 N -0.31 -5.62 3.77 -185.90 -0.70 -6.32 16 23 C 0.08 1.20 6.70 38.19 0.26 1.45 16 24 C -0.08 -1.02 9.77 22.58 0.22 -0.80 16 25 C -0.14 -0.97 10.10 22.34 0.23 -0.75 16 26 C 0.09 0.75 11.18 84.70 0.95 1.69 16 27 N -0.48 -6.44 10.35 -195.36 -2.02 -8.46 16 28 C 0.09 1.09 10.62 84.83 0.90 1.99 16 29 C 0.10 1.65 8.56 84.24 0.72 2.37 16 30 H 0.07 0.73 7.38 -2.39 -0.02 0.72 16 31 H 0.09 0.76 5.27 -2.38 -0.01 0.75 16 32 H 0.10 0.80 7.83 -2.39 -0.02 0.78 16 33 H 0.12 2.03 7.85 -2.39 -0.02 2.01 16 34 H 0.08 2.06 7.45 -2.39 -0.02 2.04 16 35 H 0.38 14.06 8.38 -74.06 -0.62 13.44 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.37 21.50 7.67 -92.71 -0.71 20.79 16 39 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.21 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.15 1.87 7.77 -2.91 -0.02 1.84 16 42 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 43 H 0.19 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.18 1.36 6.74 -2.91 -0.02 1.34 16 45 H 0.23 2.01 3.95 -2.91 -0.01 2.00 16 Total: -1.00 -83.51 381.05 1.06 -82.44 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.27 Total: 36.31 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 8.29 Total: 14.80 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -7.42 Total: -139.58 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.56 Total: -43.07 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -83.51 1.06 -82.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278767129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.366 kcal (2) G-P(sol) polarization free energy of solvation -83.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds