Wall clock time and date at job start Wed Apr 1 2020 04:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 119.99992 * 2 1 4 4 H 1.07997 * 120.00433 * 203.71901 * 3 2 1 5 5 C 1.38813 * 119.99795 * 23.71669 * 3 2 1 6 6 N 1.31619 * 120.00356 * 11.30482 * 5 3 2 7 7 Si 1.86807 * 120.00073 * 191.29984 * 5 3 2 8 8 H 1.48503 * 109.46872 * 90.00167 * 7 5 3 9 9 H 1.48491 * 109.47084 * 210.00102 * 7 5 3 10 10 H 1.48498 * 109.46908 * 330.00326 * 7 5 3 11 11 C 1.46504 * 119.99901 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46637 * 90.00554 * 11 2 1 13 13 H 1.08996 * 109.47563 * 59.99271 * 12 11 2 14 14 O 1.42904 * 109.46692 * 299.99409 * 12 11 2 15 15 C 1.53003 * 109.46805 * 179.97438 * 12 11 2 16 16 N 1.46504 * 109.46926 * 184.99371 * 15 12 11 17 17 C 1.46496 * 120.00440 * 270.00068 * 16 15 12 18 18 C 1.34776 * 119.99451 * 90.00164 * 16 15 12 19 19 O 1.21558 * 120.00301 * 4.78886 * 18 16 15 20 20 C 1.47842 * 119.99999 * 184.78676 * 18 16 15 21 21 C 1.40598 * 120.28313 * 140.46187 * 20 18 16 22 22 N 1.30820 * 121.52473 * 179.97438 * 21 20 18 23 23 C 1.33761 * 121.79369 * 0.02574 * 22 21 20 24 24 N 1.33889 * 120.61043 * 179.97438 * 23 22 21 25 25 C 1.31343 * 119.83930 * 180.02562 * 24 23 22 26 26 C 1.39757 * 120.77473 * 359.97438 * 25 24 23 27 27 N 1.31303 * 120.55836 * 0.03975 * 26 25 24 28 28 C 1.33666 * 119.70798 * 359.97438 * 27 26 25 29 29 C 1.38907 * 120.28009 * 320.44761 * 20 18 16 30 30 H 1.09005 * 109.47300 * 268.32235 * 1 2 3 31 31 H 1.08992 * 109.47631 * 28.32605 * 1 2 3 32 32 H 1.09000 * 109.47109 * 148.33027 * 1 2 3 33 33 H 0.96998 * 120.00560 * 179.97438 * 6 5 3 34 34 H 1.08992 * 109.47304 * 330.00160 * 11 2 1 35 35 H 1.09006 * 109.46730 * 209.99919 * 11 2 1 36 36 H 0.96699 * 114.00194 * 300.00175 * 14 12 11 37 37 H 1.09006 * 109.47051 * 64.99679 * 15 12 11 38 38 H 1.09000 * 109.47179 * 304.99736 * 15 12 11 39 39 H 1.09000 * 109.47171 * 266.48179 * 17 16 15 40 40 H 1.09003 * 109.46785 * 26.47706 * 17 16 15 41 41 H 1.08995 * 109.47172 * 146.47555 * 17 16 15 42 42 H 1.08003 * 119.23547 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.60826 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.71577 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.99383 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1612 1.2255 -0.3762 5 6 1.5435 2.3372 0.4835 6 7 0.4068 2.2557 1.1421 7 14 2.3410 4.0025 0.1997 8 1 1.8465 4.5769 -1.0774 9 1 1.9950 4.9143 1.3194 10 1 3.8155 3.8399 0.1312 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 3.0415 -0.9515 -1.9559 14 8 1.2039 -1.8821 -2.1153 15 6 3.2181 -3.0357 -1.4413 16 7 3.5665 -3.3989 -2.8171 17 6 2.6464 -4.2129 -3.6152 18 6 4.7335 -2.9841 -3.3486 19 8 5.5354 -2.3834 -2.6603 20 6 5.0384 -3.2598 -4.7687 21 6 5.6799 -2.2887 -5.5576 22 7 5.9617 -2.5070 -6.8163 23 6 5.6547 -3.6619 -7.4172 24 7 5.9537 -3.8599 -8.7071 25 6 5.6448 -4.9997 -9.2821 26 6 5.0061 -6.0135 -8.5629 27 7 4.7019 -5.8439 -7.2968 28 6 5.0064 -4.6920 -6.6910 29 6 4.6938 -4.4805 -5.3349 30 1 -0.3634 -0.0301 1.0273 31 1 -0.3634 0.9045 -0.4876 32 1 -0.3633 -0.8746 -0.5395 33 1 -0.0166 3.0602 1.4803 34 1 1.6085 -2.0282 0.5147 35 1 3.1500 -1.1381 0.5144 36 1 0.6268 -2.5447 -1.7115 37 1 2.5935 -3.8161 -1.0065 38 1 4.1288 -2.9288 -0.8520 39 1 2.9165 -5.2647 -3.5208 40 1 1.6274 -4.0660 -3.2572 41 1 2.7106 -3.9137 -4.6613 42 1 5.9462 -1.3406 -5.1141 43 1 5.8882 -5.1555 -10.3228 44 1 4.7603 -6.9442 -9.0526 45 1 4.2010 -5.2446 -4.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284501215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:25 Heat of formation + Delta-G solvation = 48.930184 kcal Electronic energy + Delta-G solvation = -29772.651576 eV Core-core repulsion = 25599.697703 eV Total energy + Delta-G solvation = -4172.953873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18414 -40.37763 -38.49782 -37.45177 -35.80811 -35.33626 -34.57922 -32.63786 -31.67232 -31.33656 -29.74289 -27.34550 -26.68205 -26.02848 -25.70202 -24.84962 -23.32271 -22.37372 -20.90243 -20.62577 -19.50468 -18.58543 -17.83550 -17.12023 -16.79345 -16.38841 -16.01960 -15.90225 -15.70800 -15.27856 -15.13219 -14.95972 -14.73536 -14.13524 -13.92742 -13.75107 -13.31400 -13.22024 -13.11999 -12.95405 -12.89330 -12.58368 -12.25759 -12.17644 -11.84656 -11.55000 -11.16425 -11.13175 -10.88516 -10.68894 -10.58520 -10.37480 -10.27664 -10.02720 -9.87828 -9.80645 -9.72997 -9.62294 -9.23124 -8.73352 -8.41001 -6.65080 -5.69734 -3.15196 -0.57730 -0.22043 1.24508 1.97561 2.51796 2.78469 3.05525 3.37255 3.42561 3.48574 3.50342 3.52859 3.53506 4.03538 4.09828 4.15846 4.38266 4.52206 4.58303 4.73368 4.78807 4.87670 4.88914 4.99730 5.17453 5.23869 5.28154 5.40630 5.46285 5.50036 5.75837 5.82197 5.86187 5.89953 5.99354 6.33322 6.43312 6.60023 6.70961 6.88230 6.91861 7.09121 7.44657 7.46695 7.73444 7.86043 7.87036 8.11663 8.45094 9.28258 9.90491 10.39168 11.36024 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.002385 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.116610 B =11735.373876 C =12539.802507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.592 5.592 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.126 3.874 12 C 0.069 3.931 13 H 0.098 0.902 14 O -0.549 6.549 15 C 0.082 3.918 16 N -0.595 5.595 17 C 0.072 3.928 18 C 0.560 3.440 19 O -0.518 6.518 20 C -0.161 4.161 21 C 0.214 3.786 22 N -0.456 5.456 23 C 0.271 3.729 24 N -0.417 5.417 25 C 0.111 3.889 26 C 0.072 3.928 27 N -0.407 5.407 28 C 0.018 3.982 29 C 0.001 3.999 30 H 0.015 0.985 31 H 0.051 0.949 32 H -0.002 1.002 33 H 0.252 0.748 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.358 0.642 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.185 0.815 43 H 0.185 0.815 44 H 0.184 0.816 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -22.191 -17.292 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.313 5.313 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.003 4.003 12 C 0.006 3.994 13 H 0.116 0.884 14 O -0.352 6.352 15 C -0.040 4.040 16 N -0.327 5.327 17 C -0.071 4.071 18 C 0.346 3.654 19 O -0.394 6.394 20 C -0.169 4.169 21 C 0.037 3.963 22 N -0.164 5.164 23 C 0.031 3.969 24 N -0.132 5.132 25 C -0.068 4.068 26 C -0.105 4.105 27 N -0.122 5.122 28 C -0.108 4.108 29 C -0.026 4.026 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.203 0.797 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.202 0.798 43 H 0.202 0.798 44 H 0.201 0.799 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.062 -20.495 -17.578 27.909 hybrid contribution -0.333 -0.205 0.530 0.659 sum 6.729 -20.700 -17.048 27.648 Atomic orbital electron populations 1.20738 0.82373 0.96991 0.97442 1.43700 1.01907 1.00145 1.85562 1.19197 0.98561 0.85871 1.34660 0.91568 1.25020 0.97830 0.98603 0.98185 1.70068 1.18912 1.27282 1.39173 0.86248 0.78943 0.84063 0.77286 1.21491 1.21748 1.20386 1.21269 0.97095 0.89578 0.92366 1.23326 0.84190 0.94108 0.97772 0.88440 1.86658 1.29139 1.63315 1.56114 1.22484 1.01865 0.98551 0.81149 1.47659 1.18197 1.51967 1.14859 1.22162 0.94975 0.93743 0.96219 1.17888 0.82029 0.79716 0.85737 1.90864 1.47076 1.40495 1.60927 1.21227 1.02931 0.96295 0.96428 1.23351 0.87381 0.98528 0.87030 1.67609 1.18600 1.19433 1.10765 1.20153 0.94686 0.90647 0.91399 1.68360 1.15132 1.21544 1.08166 1.24352 0.92300 0.88286 1.01885 1.24224 0.94931 1.00767 0.90549 1.68587 1.13752 1.19433 1.10389 1.20157 1.01572 0.92827 0.96233 1.22164 0.92153 0.96452 0.91862 0.96674 0.93037 0.98337 0.93797 0.94325 0.92480 0.79686 0.90108 0.88583 0.92382 0.89579 0.91214 0.79808 0.79837 0.79947 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.18 8.74 59.85 0.52 4.70 16 2 N -0.59 -14.83 2.84 -181.12 -0.52 -15.35 16 3 C -0.25 -7.10 9.65 -15.06 -0.15 -7.24 16 4 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 5 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 6 N -0.91 -26.97 10.70 55.49 0.59 -26.37 16 7 Si 0.90 22.51 29.57 -169.99 -5.03 17.49 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.13 2.44 5.37 -4.04 -0.02 2.42 16 12 C 0.07 1.14 3.48 -26.73 -0.09 1.05 16 13 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 14 O -0.55 -8.83 10.92 -35.23 -0.38 -9.21 16 15 C 0.08 1.02 5.09 -4.04 -0.02 1.00 16 16 N -0.60 -6.89 2.84 -182.69 -0.52 -7.41 16 17 C 0.07 0.59 8.68 59.84 0.52 1.11 16 18 C 0.56 7.48 7.36 -12.33 -0.09 7.39 16 19 O -0.52 -8.71 16.48 5.31 0.09 -8.62 16 20 C -0.16 -1.84 5.24 -104.83 -0.55 -2.39 16 21 C 0.21 2.59 10.77 -17.09 -0.18 2.40 16 22 N -0.46 -6.08 10.39 -12.27 -0.13 -6.21 16 23 C 0.27 3.34 7.60 -157.60 -1.20 2.14 16 24 N -0.42 -4.58 10.55 -12.38 -0.13 -4.71 16 25 C 0.11 0.68 11.21 -17.19 -0.19 0.48 16 26 C 0.07 0.39 11.22 -17.21 -0.19 0.20 16 27 N -0.41 -3.56 10.46 -10.77 -0.11 -3.67 16 28 C 0.02 0.19 6.59 -84.78 -0.56 -0.36 16 29 C 0.00 0.01 7.64 -38.38 -0.29 -0.28 16 30 H 0.01 0.40 7.72 -51.93 -0.40 0.00 16 31 H 0.05 1.41 6.88 -51.93 -0.36 1.06 16 32 H 0.00 -0.04 6.85 -51.93 -0.36 -0.39 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 36 H 0.36 4.38 8.79 45.56 0.40 4.78 16 37 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 39 H 0.06 0.34 6.98 -51.93 -0.36 -0.02 16 40 H 0.09 0.67 7.18 -51.93 -0.37 0.30 16 41 H 0.07 0.59 5.76 -51.93 -0.30 0.29 16 42 H 0.19 2.02 8.05 -52.48 -0.42 1.60 16 43 H 0.18 0.29 8.06 -52.48 -0.42 -0.14 16 44 H 0.18 0.18 8.06 -52.49 -0.42 -0.25 16 45 H 0.16 1.21 5.44 -52.48 -0.29 0.93 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -37.64 375.40 -7.97 -45.61 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.91 Total: 0.23 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -2.59 Total: 12.56 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.81 Total: -63.72 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.30 Total: -17.84 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.64 -7.97 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284501215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.545 kcal (2) G-P(sol) polarization free energy of solvation -37.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds