Wall clock time and date at job start Wed Apr 1 2020 04:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 119.99992 * 2 1 4 4 H 1.07997 * 120.00433 * 203.71901 * 3 2 1 5 5 C 1.38813 * 119.99795 * 23.71669 * 3 2 1 6 6 N 1.31619 * 120.00356 * 11.30482 * 5 3 2 7 7 Si 1.86807 * 120.00073 * 191.29984 * 5 3 2 8 8 H 1.48503 * 109.46872 * 90.00167 * 7 5 3 9 9 H 1.48491 * 109.47084 * 210.00102 * 7 5 3 10 10 H 1.48498 * 109.46908 * 330.00326 * 7 5 3 11 11 C 1.46504 * 119.99901 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46637 * 90.00554 * 11 2 1 13 13 H 1.08996 * 109.47563 * 59.99271 * 12 11 2 14 14 O 1.42904 * 109.46692 * 299.99409 * 12 11 2 15 15 C 1.53003 * 109.46805 * 179.97438 * 12 11 2 16 16 N 1.46504 * 109.46926 * 184.99371 * 15 12 11 17 17 C 1.46496 * 120.00440 * 270.00068 * 16 15 12 18 18 C 1.34776 * 119.99451 * 90.00164 * 16 15 12 19 19 O 1.21558 * 120.00301 * 4.78886 * 18 16 15 20 20 C 1.47842 * 119.99999 * 184.78676 * 18 16 15 21 21 C 1.40598 * 120.28313 * 140.46187 * 20 18 16 22 22 N 1.30820 * 121.52473 * 179.97438 * 21 20 18 23 23 C 1.33761 * 121.79369 * 0.02574 * 22 21 20 24 24 N 1.33889 * 120.61043 * 179.97438 * 23 22 21 25 25 C 1.31343 * 119.83930 * 180.02562 * 24 23 22 26 26 C 1.39757 * 120.77473 * 359.97438 * 25 24 23 27 27 N 1.31303 * 120.55836 * 0.03975 * 26 25 24 28 28 C 1.33666 * 119.70798 * 359.97438 * 27 26 25 29 29 C 1.38907 * 120.28009 * 320.44761 * 20 18 16 30 30 H 1.09005 * 109.47300 * 268.32235 * 1 2 3 31 31 H 1.08992 * 109.47631 * 28.32605 * 1 2 3 32 32 H 1.09000 * 109.47109 * 148.33027 * 1 2 3 33 33 H 0.96998 * 120.00560 * 179.97438 * 6 5 3 34 34 H 1.08992 * 109.47304 * 330.00160 * 11 2 1 35 35 H 1.09006 * 109.46730 * 209.99919 * 11 2 1 36 36 H 0.96699 * 114.00194 * 300.00175 * 14 12 11 37 37 H 1.09006 * 109.47051 * 64.99679 * 15 12 11 38 38 H 1.09000 * 109.47179 * 304.99736 * 15 12 11 39 39 H 1.09000 * 109.47171 * 266.48179 * 17 16 15 40 40 H 1.09003 * 109.46785 * 26.47706 * 17 16 15 41 41 H 1.08995 * 109.47172 * 146.47555 * 17 16 15 42 42 H 1.08003 * 119.23547 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.60826 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.71577 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.99383 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1612 1.2255 -0.3762 5 6 1.5435 2.3372 0.4835 6 7 0.4068 2.2557 1.1421 7 14 2.3410 4.0025 0.1997 8 1 1.8465 4.5769 -1.0774 9 1 1.9950 4.9143 1.3194 10 1 3.8155 3.8399 0.1312 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 3.0415 -0.9515 -1.9559 14 8 1.2039 -1.8821 -2.1153 15 6 3.2181 -3.0357 -1.4413 16 7 3.5665 -3.3989 -2.8171 17 6 2.6464 -4.2129 -3.6152 18 6 4.7335 -2.9841 -3.3486 19 8 5.5354 -2.3834 -2.6603 20 6 5.0384 -3.2598 -4.7687 21 6 5.6799 -2.2887 -5.5576 22 7 5.9617 -2.5070 -6.8163 23 6 5.6547 -3.6619 -7.4172 24 7 5.9537 -3.8599 -8.7071 25 6 5.6448 -4.9997 -9.2821 26 6 5.0061 -6.0135 -8.5629 27 7 4.7019 -5.8439 -7.2968 28 6 5.0064 -4.6920 -6.6910 29 6 4.6938 -4.4805 -5.3349 30 1 -0.3634 -0.0301 1.0273 31 1 -0.3634 0.9045 -0.4876 32 1 -0.3633 -0.8746 -0.5395 33 1 -0.0166 3.0602 1.4803 34 1 1.6085 -2.0282 0.5147 35 1 3.1500 -1.1381 0.5144 36 1 0.6268 -2.5447 -1.7115 37 1 2.5935 -3.8161 -1.0065 38 1 4.1288 -2.9288 -0.8520 39 1 2.9165 -5.2647 -3.5208 40 1 1.6274 -4.0660 -3.2572 41 1 2.7106 -3.9137 -4.6613 42 1 5.9462 -1.3406 -5.1141 43 1 5.8882 -5.1555 -10.3228 44 1 4.7603 -6.9442 -9.0526 45 1 4.2010 -5.2446 -4.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284501215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:24 Heat of formation + Delta-G solvation = 18.684408 kcal Electronic energy + Delta-G solvation = -29773.963131 eV Core-core repulsion = 25599.697703 eV Total energy + Delta-G solvation = -4174.265428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.88902 -41.31033 -39.39746 -38.74195 -36.97693 -36.38946 -35.90618 -33.52443 -33.22392 -32.34504 -31.10322 -28.24899 -27.92470 -27.62922 -26.79421 -25.82357 -24.12243 -23.80385 -22.32471 -21.78307 -20.31574 -19.34306 -18.79359 -18.59507 -17.91905 -17.61746 -16.88421 -16.82844 -16.72810 -16.47259 -16.26926 -16.25122 -15.79768 -15.46593 -14.97225 -14.81978 -14.74422 -14.68964 -14.01007 -13.90588 -13.82822 -13.70405 -13.27589 -13.03540 -12.98437 -12.86401 -12.83708 -12.60715 -12.48838 -12.20790 -12.07536 -11.98272 -11.95841 -11.81550 -11.37595 -11.17968 -10.62336 -10.52861 -10.34607 -9.93181 -9.70251 -8.66082 -7.84962 -5.31861 -1.24514 -0.92483 0.54890 1.18672 1.42049 1.43579 1.52201 1.61292 1.92790 2.38142 2.48452 2.72596 2.81751 2.86592 3.26688 3.29625 3.37426 3.54852 3.55408 3.73193 3.76533 3.97325 4.08630 4.14919 4.16441 4.21668 4.32674 4.46996 4.51165 4.51859 4.63062 4.79019 4.79316 4.88259 4.96055 5.02628 5.19920 5.24888 5.41071 5.43997 5.59240 5.73659 5.79364 6.15083 6.29397 6.33445 6.73048 6.88898 7.03396 7.15965 7.89341 8.30107 9.17897 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.002385 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.116610 B =11735.373876 C =12539.802507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.611 5.611 3 C -0.260 4.260 4 H 0.058 0.942 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.963 3.037 8 H -0.288 1.288 9 H -0.289 1.289 10 H -0.272 1.272 11 C 0.122 3.878 12 C 0.090 3.910 13 H 0.050 0.950 14 O -0.560 6.560 15 C 0.093 3.907 16 N -0.591 5.591 17 C 0.065 3.935 18 C 0.559 3.441 19 O -0.565 6.565 20 C -0.175 4.175 21 C 0.199 3.801 22 N -0.486 5.486 23 C 0.246 3.754 24 N -0.463 5.463 25 C 0.131 3.869 26 C 0.094 3.906 27 N -0.423 5.423 28 C 0.006 3.994 29 C 0.021 3.979 30 H -0.007 1.007 31 H 0.014 0.986 32 H 0.039 0.961 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.178 0.822 43 H 0.233 0.767 44 H 0.237 0.763 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -26.154 -19.469 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.334 5.334 3 C -0.390 4.390 4 H 0.076 0.924 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.791 3.209 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.197 1.197 11 C -0.005 4.005 12 C 0.027 3.973 13 H 0.069 0.931 14 O -0.367 6.367 15 C -0.030 4.030 16 N -0.322 5.322 17 C -0.076 4.076 18 C 0.346 3.654 19 O -0.445 6.445 20 C -0.182 4.182 21 C 0.023 3.977 22 N -0.196 5.196 23 C 0.007 3.993 24 N -0.179 5.179 25 C -0.049 4.049 26 C -0.084 4.084 27 N -0.137 5.137 28 C -0.119 4.119 29 C -0.006 4.006 30 H 0.011 0.989 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.228 0.772 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.195 0.805 43 H 0.249 0.751 44 H 0.253 0.747 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.464 -24.499 -19.735 32.117 hybrid contribution -0.166 0.781 0.927 1.223 sum 6.298 -23.718 -18.809 30.919 Atomic orbital electron populations 1.20476 0.82389 0.96926 0.96182 1.43932 1.02265 1.01266 1.85953 1.19421 0.98414 0.87547 1.33636 0.92373 1.25717 0.98668 1.01675 0.98691 1.70205 1.20092 1.27649 1.40428 0.85332 0.78367 0.80300 0.76886 1.21533 1.21564 1.19720 1.21506 0.96511 0.88052 0.94445 1.22746 0.84616 0.95254 0.94677 0.93132 1.86620 1.29280 1.64502 1.56279 1.22282 1.01380 0.97417 0.81937 1.47716 1.18031 1.51609 1.14800 1.22440 0.94744 0.94901 0.95524 1.18183 0.82099 0.78924 0.86199 1.90829 1.48797 1.42730 1.62143 1.20938 1.04649 0.97293 0.95341 1.23258 0.88287 0.98900 0.87221 1.67524 1.19817 1.21003 1.11224 1.20391 0.95671 0.90857 0.92371 1.68390 1.17290 1.24240 1.07932 1.25319 0.89371 0.86551 1.03649 1.25194 0.91877 1.02043 0.89317 1.68692 1.14768 1.18277 1.11997 1.20186 1.01900 0.93268 0.96512 1.22356 0.90645 0.95769 0.91808 0.98866 0.96691 0.94270 0.94249 0.91054 0.93538 0.77239 0.85687 0.89859 0.88961 0.88492 0.91532 0.80542 0.75084 0.74653 0.79272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.17 8.74 127.77 1.12 10.28 16 2 N -0.61 -30.96 2.84 -726.93 -2.07 -33.03 16 3 C -0.26 -14.94 9.65 84.03 0.81 -14.13 16 4 H 0.06 3.36 7.85 -2.91 -0.02 3.34 16 5 C -0.05 -3.08 5.09 84.86 0.43 -2.64 16 6 N -0.94 -57.00 10.70 21.65 0.23 -56.77 16 7 Si 0.96 47.51 29.57 68.60 2.03 49.54 16 8 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 11 C 0.12 4.65 5.37 86.38 0.46 5.11 16 12 C 0.09 2.93 3.48 30.60 0.11 3.03 16 13 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 14 O -0.56 -16.93 10.92 -148.98 -1.63 -18.56 16 15 C 0.09 2.16 5.09 86.38 0.44 2.60 16 16 N -0.59 -12.92 2.84 -850.19 -2.41 -15.34 16 17 C 0.07 0.87 8.68 127.77 1.11 1.98 16 18 C 0.56 15.31 7.36 86.79 0.64 15.94 16 19 O -0.57 -20.25 16.48 -3.90 -0.06 -20.32 16 20 C -0.17 -4.13 5.24 -20.00 -0.10 -4.24 16 21 C 0.20 5.29 10.77 85.42 0.92 6.21 16 22 N -0.49 -13.87 10.39 -192.75 -2.00 -15.87 16 23 C 0.25 6.06 7.60 134.96 1.03 7.09 16 24 N -0.46 -9.60 10.55 -193.09 -2.04 -11.64 16 25 C 0.13 1.10 11.21 85.13 0.95 2.05 16 26 C 0.09 0.58 11.22 85.14 0.96 1.53 16 27 N -0.42 -6.00 10.46 -187.99 -1.97 -7.97 16 28 C 0.01 0.11 6.59 40.34 0.27 0.38 16 29 C 0.02 0.39 7.64 23.05 0.18 0.57 16 30 H -0.01 -0.37 7.72 -2.38 -0.02 -0.39 16 31 H 0.01 0.81 6.88 -2.39 -0.02 0.79 16 32 H 0.04 1.58 6.85 -2.39 -0.02 1.56 16 33 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 35 H 0.05 1.86 8.04 -2.38 -0.02 1.84 16 36 H 0.38 7.85 8.79 -74.06 -0.65 7.20 16 37 H 0.13 1.84 8.07 -2.38 -0.02 1.82 16 38 H 0.08 2.21 7.36 -2.39 -0.02 2.19 16 39 H 0.09 0.65 6.98 -2.39 -0.02 0.63 16 40 H 0.10 1.12 7.18 -2.39 -0.02 1.11 16 41 H 0.07 0.97 5.76 -2.39 -0.01 0.96 16 42 H 0.18 4.58 8.05 -2.91 -0.02 4.55 16 43 H 0.23 -0.54 8.06 -2.91 -0.02 -0.57 16 44 H 0.24 -1.18 8.06 -2.91 -0.02 -1.20 16 45 H 0.19 2.25 5.44 -2.91 -0.02 2.24 16 Total: -1.00 -88.77 375.40 -0.21 -88.98 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 0.40 Total: 5.22 kcal Atomic # 6 Polarization: 26.45 SS G_CDS: 9.31 Total: 35.76 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -10.25 Total: -140.61 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.69 Total: -38.88 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -88.77 -0.21 -88.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284501215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.662 kcal (2) G-P(sol) polarization free energy of solvation -88.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds