Wall clock time and date at job start Wed Apr 1 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35036 * 126.40053 * 2 1 4 4 N 1.30499 * 108.70459 * 179.76911 * 3 2 1 5 5 C 1.34128 * 109.25064 * 0.38150 * 4 3 2 6 6 C 1.50707 * 125.99117 * 179.88725 * 5 4 3 7 7 N 1.46509 * 109.46813 * 274.68892 * 6 5 4 8 8 C 1.34769 * 120.00005 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 7 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 C 1.34666 * 108.02403 * 359.61876 * 5 4 3 29 29 H 1.09005 * 109.47373 * 270.00276 * 1 2 3 30 30 H 1.09001 * 109.47123 * 29.99721 * 1 2 3 31 31 H 1.08998 * 109.47956 * 149.99910 * 1 2 3 32 32 H 1.07999 * 125.65002 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47405 * 154.68837 * 6 5 4 34 34 H 1.09002 * 109.46995 * 34.68250 * 6 5 4 35 35 H 0.96999 * 119.99506 * 359.97438 * 7 6 5 36 36 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 37 37 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 38 38 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 40 40 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 41 41 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 42 42 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 43 43 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 44 44 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 45 45 H 1.08000 * 126.59490 * 180.20613 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5095 0.6902 0.0050 5 6 3.5460 -0.6506 -0.0001 6 6 4.7889 -1.5028 0.0007 7 7 5.2600 -1.6804 -1.3752 8 6 6.3653 -2.4116 -1.6199 9 8 6.9713 -2.9244 -0.6989 10 7 6.7985 -2.5755 -2.8856 11 6 7.9429 -3.3333 -3.1391 12 7 8.5985 -3.8878 -2.1329 13 6 9.6848 -4.6113 -2.3281 14 6 10.1811 -4.8184 -3.5997 15 6 9.5224 -4.2603 -4.6864 16 6 8.3855 -3.5000 -4.4511 17 8 7.7102 -2.9301 -5.4848 18 6 8.2296 -3.1488 -6.7980 19 6 7.3435 -2.4364 -7.8220 20 6 7.8916 -2.6664 -9.2068 21 1 8.7830 -3.2608 -9.3429 22 6 7.2557 -2.1172 -10.2999 23 7 6.1705 -1.3929 -10.1341 24 14 7.9346 -2.4028 -12.0165 25 1 9.1544 -3.2457 -11.9325 26 1 6.9125 -3.0916 -12.8449 27 1 8.2770 -1.0977 -12.6369 28 6 2.2772 -1.1019 -0.0001 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3635 -0.8899 -0.5138 32 1 1.9335 2.1143 -0.0004 33 1 4.5619 -2.4761 0.4355 34 1 5.5645 -1.0135 0.5899 35 1 4.7764 -1.2716 -2.1100 36 1 6.3149 -2.1668 -3.6204 37 1 10.1930 -5.0476 -1.4809 38 1 11.0708 -5.4126 -3.7478 39 1 9.8879 -4.4113 -5.6914 40 1 8.2425 -4.2178 -7.0104 41 1 9.2439 -2.7541 -6.8579 42 1 6.3294 -2.8313 -7.7619 43 1 7.3303 -1.3674 -7.6097 44 1 5.7229 -1.0069 -10.9031 45 1 1.9611 -2.1346 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310592045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:47 Heat of formation + Delta-G solvation = 23.333266 kcal Electronic energy + Delta-G solvation = -28432.997030 eV Core-core repulsion = 24258.933191 eV Total energy + Delta-G solvation = -4174.063839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05269 -42.03429 -40.63241 -39.09841 -36.43832 -35.80690 -35.42954 -34.62827 -32.86038 -32.28347 -31.23181 -30.15135 -28.44806 -27.15459 -26.49516 -24.86168 -23.90750 -22.78708 -22.16925 -21.77961 -21.37544 -19.87018 -19.33857 -18.84260 -18.03702 -17.80635 -17.21915 -17.19065 -16.76469 -16.60625 -16.47440 -16.20000 -15.55953 -15.47885 -15.30752 -15.13072 -14.92557 -14.80509 -14.35076 -14.12931 -13.75949 -13.74741 -13.52341 -13.51522 -13.29508 -13.26102 -12.77808 -12.76021 -12.42534 -11.85009 -11.69731 -11.64876 -11.58142 -11.38164 -10.97816 -10.61227 -10.55907 -10.40611 -10.22386 -10.08756 -9.48690 -8.79345 -8.25464 -6.37842 0.18070 0.33753 0.94447 1.42495 1.42833 1.44418 1.55895 1.95139 2.10827 2.13226 2.14477 2.45158 2.94779 3.08805 3.09859 3.52367 3.61802 3.88980 3.89541 4.00247 4.07928 4.16568 4.26375 4.31280 4.36033 4.36917 4.47936 4.51187 4.65880 4.76286 4.76343 4.88581 4.99039 5.16858 5.26276 5.30027 5.33301 5.39380 5.51035 5.53728 5.64926 5.72346 5.83160 6.08766 6.27300 6.37585 6.72150 6.77362 7.09886 7.17653 7.32187 7.53275 8.87505 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008027 B = 0.002378 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.560842 B =11769.746695 C =14978.971052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.460 5.460 3 C 0.183 3.817 4 N -0.527 5.527 5 C -0.050 4.050 6 C 0.235 3.765 7 N -0.725 5.725 8 C 0.696 3.304 9 O -0.573 6.573 10 N -0.661 5.661 11 C 0.329 3.671 12 N -0.473 5.473 13 C 0.075 3.925 14 C -0.147 4.147 15 C -0.146 4.146 16 C 0.039 3.961 17 O -0.330 6.330 18 C 0.083 3.917 19 C 0.029 3.971 20 C -0.542 4.542 21 H 0.072 0.928 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.971 3.029 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.279 1.279 28 C -0.020 4.020 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.405 0.595 36 H 0.423 0.577 37 H 0.186 0.814 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.001 0.999 43 H 0.000 1.000 44 H 0.266 0.734 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -1.300 20.166 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.101 4.101 4 N -0.246 5.246 5 C -0.178 4.178 6 C 0.110 3.890 7 N -0.382 5.382 8 C 0.396 3.604 9 O -0.448 6.448 10 N -0.311 5.311 11 C 0.096 3.904 12 N -0.188 5.188 13 C -0.082 4.082 14 C -0.168 4.168 15 C -0.173 4.173 16 C -0.012 4.012 17 O -0.244 6.244 18 C 0.009 3.991 19 C -0.008 4.008 20 C -0.580 4.580 21 H 0.090 0.910 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.795 3.205 25 H -0.181 1.181 26 H -0.204 1.204 27 H -0.205 1.205 28 C -0.156 4.156 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.240 0.760 36 H 0.261 0.739 37 H 0.203 0.797 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.521 -0.856 21.837 23.456 hybrid contribution -0.711 0.019 -2.547 2.644 sum -9.232 -0.837 19.290 21.402 Atomic orbital electron populations 1.22411 0.73526 1.06479 1.05130 1.45738 1.09447 1.06127 1.52808 1.25627 0.84676 0.95275 1.04488 1.70123 1.21835 1.12082 1.20588 1.20474 0.94069 0.90781 1.12461 1.19106 0.91141 0.97439 0.81271 1.45131 1.27746 1.55002 1.10320 1.16053 0.81491 0.80238 0.82649 1.90978 1.58129 1.52655 1.43033 1.42513 1.26968 1.52883 1.08730 1.17686 0.89969 0.96122 0.86594 1.67687 1.09337 1.10205 1.31554 1.23070 0.91500 0.95378 0.98228 1.22268 1.02035 1.00930 0.91579 1.21885 0.94538 0.98408 1.02430 1.19681 0.95384 0.98964 0.87219 1.86030 1.52517 1.70499 1.15319 1.22951 0.98120 1.00432 0.77581 1.18952 0.94728 0.94970 0.92143 1.21435 1.12167 1.32990 0.91431 0.91031 1.25977 0.95071 0.94476 1.04077 1.70112 1.19967 1.34710 1.32143 0.85301 0.78724 0.78155 0.78282 1.18093 1.20413 1.20510 1.22909 0.90078 0.94217 1.08427 0.88944 0.87443 0.88389 0.74743 0.89585 0.92469 0.76036 0.73883 0.79688 0.80629 0.82474 0.91692 0.91832 0.98023 0.98173 0.92554 0.78229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.18 127.77 1.43 1.58 16 2 N -0.46 -5.36 3.15 -552.54 -1.74 -7.10 16 3 C 0.18 2.81 12.56 180.26 2.26 5.07 16 4 N -0.53 -12.52 11.25 -188.32 -2.12 -14.64 16 5 C -0.05 -1.07 6.46 41.39 0.27 -0.81 16 6 C 0.23 5.71 6.21 85.63 0.53 6.24 16 7 N -0.73 -19.14 5.55 -482.27 -2.68 -21.82 16 8 C 0.70 23.28 8.53 179.06 1.53 24.81 16 9 O -0.57 -22.89 14.59 -4.00 -0.06 -22.95 16 10 N -0.66 -21.97 5.40 -321.77 -1.74 -23.71 16 11 C 0.33 11.75 7.45 132.98 0.99 12.74 16 12 N -0.47 -16.66 7.87 -192.59 -1.52 -18.18 16 13 C 0.07 2.00 11.17 84.63 0.95 2.94 16 14 C -0.15 -3.38 10.10 22.36 0.23 -3.15 16 15 C -0.15 -4.13 9.14 22.53 0.21 -3.92 16 16 C 0.04 1.33 6.72 22.70 0.15 1.48 16 17 O -0.33 -12.77 9.39 -93.36 -0.88 -13.65 16 18 C 0.08 3.35 4.70 71.98 0.34 3.69 16 19 C 0.03 1.51 5.34 29.85 0.16 1.67 16 20 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 21 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 22 C 0.00 0.14 5.46 84.65 0.46 0.60 16 23 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 24 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 C -0.02 -0.30 11.49 83.09 0.95 0.66 16 29 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 30 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.40 9.48 8.48 -92.71 -0.79 8.69 16 36 H 0.42 12.87 8.06 -92.71 -0.75 12.13 16 37 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.16 3.97 6.44 -2.91 -0.02 3.95 16 40 H 0.06 2.42 7.69 -2.39 -0.02 2.40 16 41 H 0.06 2.38 7.71 -2.39 -0.02 2.37 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -81.60 390.62 1.78 -79.82 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.49 Total: 27.91 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 10.69 Total: 24.56 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -9.51 Total: -140.03 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.93 Total: -36.60 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -81.60 1.78 -79.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310592045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.154 kcal (2) G-P(sol) polarization free energy of solvation -81.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds