Wall clock time and date at job start Wed Apr 1 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47203 * 2 1 4 4 C 1.36939 * 120.00170 * 263.98128 * 3 2 1 5 5 H 1.08002 * 119.99833 * 189.02211 * 4 3 2 6 6 C 1.38810 * 119.99874 * 9.02743 * 4 3 2 7 7 N 1.31619 * 119.99993 * 28.60077 * 6 4 3 8 8 Si 1.86795 * 120.00002 * 208.59686 * 6 4 3 9 9 H 1.48497 * 109.47104 * 94.98735 * 8 6 4 10 10 H 1.48499 * 109.47423 * 214.99149 * 8 6 4 11 11 H 1.48509 * 109.47137 * 334.98921 * 8 6 4 12 12 C 1.46498 * 119.99854 * 83.98190 * 3 2 1 13 13 C 1.53004 * 109.47453 * 270.00067 * 12 3 2 14 14 C 1.52996 * 109.47170 * 180.02562 * 13 12 3 15 15 N 1.46498 * 109.46932 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00125 * 179.97438 * 15 14 13 17 17 O 1.21612 * 119.99852 * 0.02562 * 16 15 14 18 18 C 1.47394 * 120.00101 * 180.02562 * 16 15 14 19 19 C 1.38960 * 120.65498 * 353.57017 * 18 16 15 20 20 C 1.38734 * 120.72999 * 180.02562 * 19 18 16 21 21 C 1.37498 * 121.68380 * 359.97438 * 20 19 18 22 22 F 1.35094 * 119.85336 * 179.97438 * 21 20 19 23 23 C 1.40589 * 120.29226 * 359.97438 * 21 20 19 24 24 C 1.40587 * 122.24650 * 180.02562 * 23 21 20 25 25 C 1.36319 * 118.64391 * 179.97438 * 24 23 21 26 26 N 1.32486 * 121.88122 * 0.02562 * 25 24 23 27 27 C 1.31369 * 122.68205 * 359.97438 * 26 25 24 28 28 C 1.40010 * 119.85517 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47160 * 299.99586 * 1 2 3 30 30 H 1.09001 * 109.47217 * 59.99871 * 1 2 3 31 31 H 1.08999 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46973 * 239.99897 * 2 1 3 33 33 H 1.08996 * 109.47285 * 120.00601 * 2 1 3 34 34 H 0.97006 * 119.99859 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.47051 * 149.99786 * 12 3 2 36 36 H 1.09002 * 109.47483 * 30.00029 * 12 3 2 37 37 H 1.08995 * 109.46931 * 59.99748 * 13 12 3 38 38 H 1.09002 * 109.46745 * 300.00413 * 13 12 3 39 39 H 1.09003 * 109.47309 * 60.00272 * 14 13 12 40 40 H 1.08999 * 109.47094 * 299.99870 * 14 13 12 41 41 H 0.97002 * 119.99744 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.63197 * 359.97438 * 19 18 16 43 43 H 1.08001 * 119.15652 * 179.97438 * 20 19 18 44 44 H 1.07996 * 120.68268 * 359.94685 * 24 23 21 45 45 H 1.08001 * 119.05842 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.07124 * 179.72231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3638 1.9853 -1.1794 5 1 2.8586 2.9453 -1.1697 6 6 2.0780 1.3639 -2.3872 7 7 1.0472 0.5509 -2.4814 8 14 3.1562 1.6815 -3.8791 9 1 4.1866 0.6171 -3.9809 10 1 2.3184 1.6783 -5.1052 11 1 3.8210 3.0020 -3.7374 12 6 2.1371 2.1161 1.2617 13 6 0.8259 2.8502 1.5498 14 6 0.9502 3.6182 2.8672 15 7 -0.3050 4.3215 3.1427 16 6 -0.4285 5.0679 4.2581 17 8 0.5023 5.1580 5.0356 18 6 -1.6916 5.7751 4.5355 19 6 -2.7156 5.7914 3.5963 20 6 -3.9049 6.4570 3.8556 21 6 -4.1174 7.1208 5.0408 22 9 -5.2897 7.7573 5.2543 23 6 -3.1201 7.1400 6.0316 24 6 -3.2938 7.8051 7.2579 25 6 -2.2780 7.7761 8.1666 26 7 -1.1402 7.1421 7.9243 27 6 -0.9108 6.5008 6.8009 28 6 -1.8923 6.4702 5.8029 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.8477 0.1163 -3.3254 35 1 2.9493 2.8391 1.1860 36 1 2.3474 1.4169 2.0711 37 1 0.0138 2.1271 1.6255 38 1 0.6156 3.5493 0.7405 39 1 1.7623 4.3413 2.7910 40 1 1.1608 2.9193 3.6767 41 1 -1.0475 4.2493 2.5227 42 1 -2.5837 5.2810 2.6537 43 1 -4.6837 6.4536 3.1074 44 1 -4.2129 8.3287 7.4755 45 1 -2.4044 8.2844 9.1111 46 1 0.0343 6.0017 6.6460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316900009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:14 Heat of formation + Delta-G solvation = 3.782298 kcal Electronic energy + Delta-G solvation = -28904.782863 eV Core-core repulsion = 24709.951269 eV Total energy + Delta-G solvation = -4194.831594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.52932 -41.20509 -39.59515 -37.39029 -36.64644 -35.12977 -33.12236 -32.20138 -31.60388 -30.72200 -29.84874 -28.78614 -25.77608 -24.84603 -24.15955 -23.70343 -22.86553 -21.26037 -20.91937 -20.12467 -18.70588 -18.32450 -17.94568 -17.07181 -16.73935 -16.27980 -16.05599 -15.60475 -15.55405 -15.26056 -14.94919 -14.75526 -14.49869 -14.12691 -14.06098 -13.69595 -13.52045 -13.25965 -13.13192 -12.81177 -12.71570 -12.21167 -12.00195 -11.91463 -11.73573 -11.47651 -11.37000 -10.94884 -10.74689 -10.48220 -10.46123 -10.34778 -10.10601 -9.83873 -9.76648 -9.68646 -9.63510 -9.35061 -9.15340 -8.44371 -8.39011 -6.95044 -5.83065 -3.10097 -0.45363 0.33198 1.12276 2.15874 2.91143 2.95789 3.37461 3.45851 3.46409 3.47116 3.60779 3.94971 4.03176 4.22810 4.28014 4.35961 4.41741 4.48317 4.82428 4.96305 5.15551 5.20851 5.23996 5.28346 5.35680 5.42065 5.50464 5.57569 5.61851 5.72099 5.81132 6.03789 6.07006 6.12597 6.30605 6.35656 6.45868 6.54285 6.69711 6.81246 6.87994 7.05261 7.11866 7.33516 7.61263 7.62865 7.71571 7.99888 8.06007 8.31257 9.20086 9.84039 10.29398 11.21611 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.002001 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.026088 B =13992.622159 C =14650.527945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.167 3.833 3 N -0.596 5.596 4 C -0.252 4.252 5 H 0.074 0.926 6 C 0.000 4.000 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.156 3.844 13 C -0.156 4.156 14 C 0.118 3.882 15 N -0.713 5.713 16 C 0.558 3.442 17 O -0.534 6.534 18 C -0.107 4.107 19 C -0.055 4.055 20 C -0.140 4.140 21 C 0.127 3.873 22 F -0.126 7.126 23 C -0.057 4.057 24 C -0.156 4.156 25 C 0.084 3.916 26 N -0.480 5.480 27 C 0.150 3.850 28 C -0.058 4.058 29 H 0.014 0.986 30 H 0.094 0.906 31 H 0.018 0.982 32 H 0.079 0.921 33 H 0.005 0.995 34 H 0.251 0.749 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.401 0.599 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.158 0.842 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 11.727 16.127 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 N -0.317 5.317 4 C -0.381 4.381 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.028 3.972 13 C -0.197 4.197 14 C -0.005 4.005 15 N -0.363 5.363 16 C 0.345 3.655 17 O -0.413 6.413 18 C -0.112 4.112 19 C -0.074 4.074 20 C -0.160 4.160 21 C 0.107 3.893 22 F -0.104 7.104 23 C -0.063 4.063 24 C -0.176 4.176 25 C -0.061 4.061 26 N -0.188 5.188 27 C -0.019 4.019 28 C -0.061 4.061 29 H 0.033 0.967 30 H 0.112 0.888 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.237 0.763 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.175 0.825 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.536 11.785 17.246 23.395 hybrid contribution -1.180 0.312 -1.876 2.238 sum -11.716 12.098 15.370 22.801 Atomic orbital electron populations 1.22447 0.99307 0.98266 1.01332 1.20701 0.92529 0.84554 0.97989 1.44270 1.75640 1.10049 1.01739 1.19258 1.31141 1.04186 0.83500 0.90848 1.24683 0.97501 1.00428 0.97180 1.70169 1.24196 1.34360 1.24931 0.86442 0.81000 0.77823 0.82703 1.21664 1.22148 1.20625 1.20668 0.93582 0.94176 0.88777 1.22752 1.03094 0.99741 0.94136 1.21628 0.84627 0.95492 0.98778 1.46101 1.18049 1.48974 1.23224 1.17876 0.86593 0.79194 0.81805 1.90625 1.40556 1.63317 1.46842 1.21015 0.95193 1.00795 0.94235 1.21282 0.91192 0.96048 0.98848 1.21013 0.99430 0.99022 0.96545 1.17649 0.81686 0.95424 0.94516 1.91527 1.44586 1.79296 1.95027 1.18056 0.93556 0.99628 0.95085 1.21830 1.01598 1.00855 0.93298 1.22373 0.88569 0.95833 0.99276 1.67722 1.21977 1.07388 1.21749 1.24406 0.99377 0.92030 0.86091 1.19596 0.94075 0.97492 0.94938 0.96700 0.88785 0.96317 0.90245 0.97701 0.93829 0.93433 0.94135 0.91508 0.91333 0.91292 0.91417 0.76349 0.83611 0.83357 0.83911 0.82500 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.60 37.16 0.36 -2.97 16 2 C 0.17 3.83 5.64 -4.04 -0.02 3.81 16 3 N -0.60 -13.78 2.54 -173.24 -0.44 -14.22 16 4 C -0.25 -6.47 9.67 -15.06 -0.15 -6.61 16 5 H 0.07 1.87 7.96 -52.49 -0.42 1.45 16 6 C 0.00 -0.01 4.78 -17.43 -0.08 -0.09 16 7 N -0.89 -23.92 8.78 55.49 0.49 -23.43 16 8 Si 0.89 20.88 29.64 -169.99 -5.04 15.84 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.16 2.89 5.71 -4.04 -0.02 2.87 16 13 C -0.16 -2.45 5.53 -26.73 -0.15 -2.60 16 14 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 15 N -0.71 -8.07 5.51 -61.40 -0.34 -8.41 16 16 C 0.56 6.86 7.74 -12.53 -0.10 6.76 16 17 O -0.53 -7.95 13.66 5.27 0.07 -7.88 16 18 C -0.11 -1.12 6.05 -102.82 -0.62 -1.74 16 19 C -0.05 -0.43 9.51 -39.13 -0.37 -0.80 16 20 C -0.14 -1.04 9.90 -39.67 -0.39 -1.43 16 21 C 0.13 1.13 7.28 -38.97 -0.28 0.85 16 22 F -0.13 -1.11 16.72 2.25 0.04 -1.07 16 23 C -0.06 -0.58 5.75 -106.80 -0.61 -1.19 16 24 C -0.16 -1.38 9.70 -39.39 -0.38 -1.76 16 25 C 0.08 0.78 11.07 -17.96 -0.20 0.58 16 26 N -0.48 -5.75 10.30 -13.23 -0.14 -5.89 16 27 C 0.15 1.84 10.54 -17.09 -0.18 1.66 16 28 C -0.06 -0.66 5.90 -104.83 -0.62 -1.27 16 29 H 0.01 0.28 5.97 -51.93 -0.31 -0.03 16 30 H 0.09 2.32 6.17 -51.93 -0.32 2.00 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 2.05 6.03 -51.93 -0.31 1.73 16 33 H 0.00 0.10 7.98 -51.93 -0.41 -0.31 16 34 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.05 0.87 8.03 -51.92 -0.42 0.45 16 36 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 37 H 0.07 1.09 5.92 -51.93 -0.31 0.78 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 3.66 6.57 -40.82 -0.27 3.39 16 42 H 0.15 0.80 6.46 -52.49 -0.34 0.46 16 43 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.14 0.92 7.81 -52.49 -0.41 0.51 16 45 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.20 2.62 5.16 -52.49 -0.27 2.35 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -29.70 377.48 -9.39 -39.09 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.87 Total: 2.70 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.85 Total: -2.41 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.43 Total: -51.96 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.04 Total: 15.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.70 -9.39 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316900009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.875 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds