Wall clock time and date at job start Wed Apr 1 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47203 * 2 1 4 4 C 1.36939 * 120.00170 * 263.98128 * 3 2 1 5 5 H 1.08002 * 119.99833 * 189.02211 * 4 3 2 6 6 C 1.38810 * 119.99874 * 9.02743 * 4 3 2 7 7 N 1.31619 * 119.99993 * 28.60077 * 6 4 3 8 8 Si 1.86795 * 120.00002 * 208.59686 * 6 4 3 9 9 H 1.48497 * 109.47104 * 94.98735 * 8 6 4 10 10 H 1.48499 * 109.47423 * 214.99149 * 8 6 4 11 11 H 1.48509 * 109.47137 * 334.98921 * 8 6 4 12 12 C 1.46498 * 119.99854 * 83.98190 * 3 2 1 13 13 C 1.53004 * 109.47453 * 270.00067 * 12 3 2 14 14 C 1.52996 * 109.47170 * 180.02562 * 13 12 3 15 15 N 1.46498 * 109.46932 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00125 * 179.97438 * 15 14 13 17 17 O 1.21612 * 119.99852 * 0.02562 * 16 15 14 18 18 C 1.47394 * 120.00101 * 180.02562 * 16 15 14 19 19 C 1.38960 * 120.65498 * 353.57017 * 18 16 15 20 20 C 1.38734 * 120.72999 * 180.02562 * 19 18 16 21 21 C 1.37498 * 121.68380 * 359.97438 * 20 19 18 22 22 F 1.35094 * 119.85336 * 179.97438 * 21 20 19 23 23 C 1.40589 * 120.29226 * 359.97438 * 21 20 19 24 24 C 1.40587 * 122.24650 * 180.02562 * 23 21 20 25 25 C 1.36319 * 118.64391 * 179.97438 * 24 23 21 26 26 N 1.32486 * 121.88122 * 0.02562 * 25 24 23 27 27 C 1.31369 * 122.68205 * 359.97438 * 26 25 24 28 28 C 1.40010 * 119.85517 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47160 * 299.99586 * 1 2 3 30 30 H 1.09001 * 109.47217 * 59.99871 * 1 2 3 31 31 H 1.08999 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46973 * 239.99897 * 2 1 3 33 33 H 1.08996 * 109.47285 * 120.00601 * 2 1 3 34 34 H 0.97006 * 119.99859 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.47051 * 149.99786 * 12 3 2 36 36 H 1.09002 * 109.47483 * 30.00029 * 12 3 2 37 37 H 1.08995 * 109.46931 * 59.99748 * 13 12 3 38 38 H 1.09002 * 109.46745 * 300.00413 * 13 12 3 39 39 H 1.09003 * 109.47309 * 60.00272 * 14 13 12 40 40 H 1.08999 * 109.47094 * 299.99870 * 14 13 12 41 41 H 0.97002 * 119.99744 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.63197 * 359.97438 * 19 18 16 43 43 H 1.08001 * 119.15652 * 179.97438 * 20 19 18 44 44 H 1.07996 * 120.68268 * 359.94685 * 24 23 21 45 45 H 1.08001 * 119.05842 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.07124 * 179.72231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3638 1.9853 -1.1794 5 1 2.8586 2.9453 -1.1697 6 6 2.0780 1.3639 -2.3872 7 7 1.0472 0.5509 -2.4814 8 14 3.1562 1.6815 -3.8791 9 1 4.1866 0.6171 -3.9809 10 1 2.3184 1.6783 -5.1052 11 1 3.8210 3.0020 -3.7374 12 6 2.1371 2.1161 1.2617 13 6 0.8259 2.8502 1.5498 14 6 0.9502 3.6182 2.8672 15 7 -0.3050 4.3215 3.1427 16 6 -0.4285 5.0679 4.2581 17 8 0.5023 5.1580 5.0356 18 6 -1.6916 5.7751 4.5355 19 6 -2.7156 5.7914 3.5963 20 6 -3.9049 6.4570 3.8556 21 6 -4.1174 7.1208 5.0408 22 9 -5.2897 7.7573 5.2543 23 6 -3.1201 7.1400 6.0316 24 6 -3.2938 7.8051 7.2579 25 6 -2.2780 7.7761 8.1666 26 7 -1.1402 7.1421 7.9243 27 6 -0.9108 6.5008 6.8009 28 6 -1.8923 6.4702 5.8029 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.8477 0.1163 -3.3254 35 1 2.9493 2.8391 1.1860 36 1 2.3474 1.4169 2.0711 37 1 0.0138 2.1271 1.6255 38 1 0.6156 3.5493 0.7405 39 1 1.7623 4.3413 2.7910 40 1 1.1608 2.9193 3.6767 41 1 -1.0475 4.2493 2.5227 42 1 -2.5837 5.2810 2.6537 43 1 -4.6837 6.4536 3.1074 44 1 -4.2129 8.3287 7.4755 45 1 -2.4044 8.2844 9.1111 46 1 0.0343 6.0017 6.6460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316900009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:12 Heat of formation + Delta-G solvation = -12.370784 kcal Electronic energy + Delta-G solvation = -28905.483313 eV Core-core repulsion = 24709.951269 eV Total energy + Delta-G solvation = -4195.532044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.19889 -41.98146 -40.51769 -38.29295 -38.08308 -36.36224 -34.02117 -33.61753 -32.33072 -32.24450 -31.03306 -30.19465 -27.10701 -25.85974 -25.12163 -24.82339 -23.95867 -22.57710 -22.15698 -21.53799 -19.43676 -19.09521 -18.70954 -18.65739 -17.78852 -17.08193 -16.97121 -16.77441 -16.66029 -16.26338 -15.97688 -15.77814 -15.60972 -15.35044 -15.07746 -14.84490 -14.67252 -14.39577 -14.23489 -13.98222 -13.67408 -13.55285 -13.31996 -13.13567 -12.89310 -12.87841 -12.65316 -12.58570 -12.52851 -12.12811 -12.06465 -11.64123 -11.31321 -11.22407 -11.11417 -11.04043 -10.59194 -10.39999 -10.31161 -10.17267 -9.16061 -8.80636 -7.79306 -5.05968 -1.18726 -0.36614 0.35447 1.41893 1.49295 1.55005 1.60048 1.99486 2.10859 2.58197 2.77080 2.83890 3.28593 3.29892 3.35653 3.48129 3.54794 3.65122 3.68317 3.74058 4.17670 4.22420 4.23444 4.34265 4.51128 4.52306 4.57191 4.67779 4.71124 4.79415 4.81542 4.84096 4.90726 4.93915 4.97635 5.07889 5.24055 5.28679 5.38381 5.39129 5.44592 5.57718 5.59198 5.69089 5.82497 6.22687 6.39569 6.43668 6.85387 7.09535 7.26415 7.98926 8.39214 9.23236 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.002001 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.026088 B =13992.622159 C =14650.527945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.168 3.832 3 N -0.611 5.611 4 C -0.255 4.255 5 H 0.071 0.929 6 C -0.046 4.046 7 N -0.909 5.909 8 Si 0.943 3.057 9 H -0.295 1.295 10 H -0.300 1.300 11 H -0.275 1.275 12 C 0.150 3.850 13 C -0.135 4.135 14 C 0.131 3.869 15 N -0.706 5.706 16 C 0.559 3.441 17 O -0.566 6.566 18 C -0.129 4.129 19 C -0.034 4.034 20 C -0.132 4.132 21 C 0.126 3.874 22 F -0.124 7.124 23 C -0.072 4.072 24 C -0.147 4.147 25 C 0.072 3.928 26 N -0.502 5.502 27 C 0.127 3.873 28 C -0.069 4.069 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.245 0.755 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.413 0.587 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.169 0.831 45 H 0.186 0.814 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 12.648 16.513 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.042 3.958 3 N -0.333 5.333 4 C -0.384 4.384 5 H 0.089 0.911 6 C -0.242 4.242 7 N -0.556 5.556 8 Si 0.773 3.227 9 H -0.223 1.223 10 H -0.228 1.228 11 H -0.200 1.200 12 C 0.023 3.977 13 C -0.175 4.175 14 C 0.007 3.993 15 N -0.357 5.357 16 C 0.348 3.652 17 O -0.448 6.448 18 C -0.134 4.134 19 C -0.053 4.053 20 C -0.152 4.152 21 C 0.107 3.893 22 F -0.102 7.102 23 C -0.079 4.079 24 C -0.166 4.166 25 C -0.073 4.073 26 N -0.210 5.210 27 C -0.042 4.042 28 C -0.072 4.072 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.251 0.749 42 H 0.191 0.809 43 H 0.198 0.802 44 H 0.187 0.813 45 H 0.203 0.797 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.361 12.720 17.641 25.016 hybrid contribution -0.665 0.074 -1.924 2.037 sum -13.026 12.794 15.717 24.091 Atomic orbital electron populations 1.22223 0.98284 0.98763 1.00667 1.20617 0.93355 0.84541 0.97257 1.44412 1.75972 1.10468 1.02422 1.19447 1.30407 1.03972 0.84597 0.91127 1.25232 0.98502 1.01258 0.99193 1.70304 1.25037 1.35411 1.24856 0.85609 0.79343 0.77544 0.80176 1.22313 1.22781 1.20008 1.20839 0.94976 0.94538 0.87360 1.22367 1.01135 0.99173 0.94822 1.21324 0.85403 0.95273 0.97315 1.45907 1.17802 1.48617 1.23381 1.18134 0.86944 0.78854 0.81310 1.90622 1.41864 1.64426 1.47889 1.20845 0.95272 1.02271 0.95028 1.21613 0.90227 0.94591 0.98874 1.21359 0.99771 0.97543 0.96516 1.17740 0.81415 0.95480 0.94715 1.91537 1.44340 1.79264 1.95054 1.18273 0.93537 0.99938 0.96114 1.22158 1.02203 0.99775 0.92488 1.22843 0.87956 0.95817 1.00667 1.67663 1.23529 1.07920 1.21896 1.24163 0.99530 0.93354 0.87112 1.19632 0.94394 0.98084 0.95097 0.94702 0.91906 0.95237 0.93586 0.95704 0.94536 0.93398 0.92516 0.91667 0.92744 0.91778 0.91283 0.74913 0.80908 0.80200 0.81332 0.79679 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 9.60 71.98 0.69 -5.20 16 2 C 0.17 7.56 5.64 86.38 0.49 8.05 16 3 N -0.61 -27.83 2.54 -702.00 -1.78 -29.61 16 4 C -0.25 -13.00 9.67 84.03 0.81 -12.19 16 5 H 0.07 3.57 7.96 -2.91 -0.02 3.55 16 6 C -0.05 -2.43 4.78 84.86 0.41 -2.03 16 7 N -0.91 -49.34 8.78 21.65 0.19 -49.15 16 8 Si 0.94 43.27 29.64 68.60 2.03 45.30 16 9 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.15 5.33 5.71 86.38 0.49 5.83 16 13 C -0.13 -4.00 5.53 30.59 0.17 -3.83 16 14 C 0.13 3.27 5.67 86.38 0.49 3.76 16 15 N -0.71 -14.92 5.51 -466.41 -2.57 -17.49 16 16 C 0.56 13.45 7.74 86.65 0.67 14.12 16 17 O -0.57 -17.30 13.66 -4.07 -0.06 -17.35 16 18 C -0.13 -2.56 6.05 -18.70 -0.11 -2.68 16 19 C -0.03 -0.44 9.51 22.56 0.21 -0.22 16 20 C -0.13 -1.50 9.90 22.21 0.22 -1.28 16 21 C 0.13 1.92 7.28 22.67 0.17 2.08 16 22 F -0.12 -1.81 16.72 44.97 0.75 -1.06 16 23 C -0.07 -1.36 5.75 -21.27 -0.12 -1.48 16 24 C -0.15 -2.34 9.70 22.40 0.22 -2.12 16 25 C 0.07 1.27 11.07 84.15 0.93 2.20 16 26 N -0.50 -12.25 10.30 -195.76 -2.02 -14.27 16 27 C 0.13 3.25 10.54 85.19 0.90 4.14 16 28 C -0.07 -1.55 5.90 -20.00 -0.12 -1.67 16 29 H 0.03 1.28 5.97 -2.38 -0.01 1.27 16 30 H 0.06 3.08 6.17 -2.39 -0.01 3.06 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 2.38 6.03 -2.38 -0.01 2.37 16 33 H 0.02 1.01 7.98 -2.39 -0.02 0.99 16 34 H 0.25 13.14 8.31 -92.70 -0.77 12.37 16 35 H 0.05 1.70 8.03 -2.38 -0.02 1.68 16 36 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 37 H 0.06 1.98 5.92 -2.39 -0.01 1.96 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.41 6.54 6.57 -92.71 -0.61 5.93 16 42 H 0.17 1.21 6.46 -2.91 -0.02 1.19 16 43 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.17 1.70 7.81 -2.91 -0.02 1.68 16 45 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.18 5.21 5.16 -2.91 -0.02 5.19 16 Total: -1.00 -65.21 377.48 3.49 -61.72 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.42 Total: 14.43 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.51 Total: 7.48 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -6.18 Total: -110.51 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.06 Total: -17.35 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.75 Total: -1.06 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.21 3.49 -61.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316900009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.350 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds