Wall clock time and date at job start Wed Apr 1 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35452 * 124.79069 * 2 1 4 4 C 1.36385 * 109.77096 * 180.02562 * 3 2 1 5 5 C 1.46906 * 126.76506 * 179.97438 * 4 3 2 6 6 O 1.21665 * 120.00029 * 186.41105 * 5 4 3 7 7 N 1.34772 * 119.99815 * 6.41079 * 5 4 3 8 8 C 1.47431 * 125.64665 * 6.36537 * 7 5 4 9 9 C 1.55129 * 104.72243 * 155.81835 * 8 7 5 10 10 C 1.55158 * 101.48697 * 37.29034 * 9 8 7 11 11 C 1.47018 * 125.64877 * 186.67026 * 7 5 4 12 12 H 1.08996 * 109.88538 * 300.44071 * 11 7 5 13 13 C 1.53004 * 109.88061 * 61.60865 * 11 7 5 14 14 N 1.46498 * 109.47013 * 283.66645 * 13 11 7 15 15 C 1.36932 * 120.00158 * 172.31969 * 14 13 11 16 16 H 1.07993 * 120.00118 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99923 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00241 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00002 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47015 * 90.00018 * 19 17 15 21 21 H 1.48494 * 109.47361 * 210.00626 * 19 17 15 22 22 H 1.48502 * 109.47071 * 330.00677 * 19 17 15 23 23 C 1.47449 * 106.47551 * 0.02562 * 4 3 2 24 24 C 1.39282 * 133.97962 * 180.02562 * 23 4 3 25 25 C 1.37954 * 119.65234 * 179.97438 * 24 23 4 26 26 F 1.35096 * 119.87482 * 179.97438 * 25 24 23 27 27 C 1.38942 * 120.24455 * 359.97438 * 25 24 23 28 28 C 1.37756 * 120.61166 * 0.02562 * 27 25 24 29 29 C 1.38045 * 124.79269 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47429 * 89.97194 * 1 2 3 31 31 H 1.08992 * 109.47185 * 209.97392 * 1 2 3 32 32 H 1.09003 * 109.47258 * 329.97776 * 1 2 3 33 33 H 1.07998 * 125.11860 * 0.03638 * 3 2 1 34 34 H 1.09000 * 110.36386 * 274.74275 * 8 7 5 35 35 H 1.08993 * 110.37097 * 37.06723 * 8 7 5 36 36 H 1.08998 * 111.19019 * 279.19244 * 9 8 7 37 37 H 1.08996 * 110.94271 * 155.28686 * 9 8 7 38 38 H 1.08997 * 110.72451 * 205.96700 * 10 9 8 39 39 H 1.09009 * 110.71711 * 82.69718 * 10 9 8 40 40 H 1.08998 * 109.47463 * 43.66812 * 13 11 7 41 41 H 1.09004 * 109.46896 * 163.67091 * 13 11 7 42 42 H 0.97006 * 119.99815 * 352.32781 * 14 13 11 43 43 H 0.96998 * 120.00145 * 179.97438 * 18 17 15 44 44 H 1.08008 * 120.17470 * 359.97438 * 24 23 4 45 45 H 1.08004 * 119.69479 * 179.97438 * 27 25 24 46 46 H 1.07997 * 120.01840 * 179.72318 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7589 -0.0006 5 6 4.7093 1.6677 -0.0013 6 8 5.8350 1.2214 -0.1194 7 7 4.5213 2.9959 0.1289 8 6 3.2345 3.6579 0.4109 9 6 3.6220 5.0105 1.0644 10 6 4.8914 5.3911 0.2575 11 6 5.5642 4.0250 0.0069 12 1 6.3430 3.8535 0.7499 13 6 6.1661 3.9916 -1.3993 14 7 7.0792 2.8516 -1.5127 15 6 7.6175 2.5237 -2.7284 16 1 7.3692 3.1058 -3.6035 17 6 8.4831 1.4439 -2.8356 18 7 8.7861 0.7348 -1.7690 19 14 9.2168 0.9961 -4.4942 20 1 10.4980 1.7235 -4.6813 21 1 9.4659 -0.4668 -4.5466 22 1 8.2699 1.3760 -5.5732 23 6 3.5926 -0.7151 -0.0016 24 6 4.6191 -1.6565 -0.0021 25 6 4.3118 -3.0014 -0.0025 26 9 5.3039 -3.9183 -0.0035 27 6 2.9857 -3.4162 -0.0020 28 6 1.9623 -2.4942 -0.0015 29 6 2.2527 -1.1337 -0.0005 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8901 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 1.8669 2.1267 0.0006 34 1 2.6832 3.8252 -0.5143 35 1 2.6431 3.0585 1.1029 36 1 3.8543 4.8849 2.1219 37 1 2.8339 5.7504 0.9249 38 1 5.5418 6.0393 0.8448 39 1 4.6209 5.8665 -0.6854 40 1 5.3674 3.8918 -2.1343 41 1 6.7145 4.9158 -1.5818 42 1 7.3024 2.3289 -0.7266 43 1 9.3906 -0.0200 -1.8441 44 1 5.6503 -1.3353 -0.0020 45 1 2.7553 -4.4714 -0.0028 46 1 0.9350 -2.8273 -0.0056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324175365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:00 Heat of formation + Delta-G solvation = -1.048473 kcal Electronic energy + Delta-G solvation = -30978.340945 eV Core-core repulsion = 26783.299873 eV Total energy + Delta-G solvation = -4195.041072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.87571 -42.58033 -40.77536 -38.15869 -37.90490 -36.23505 -34.12637 -33.23092 -32.44259 -31.08817 -30.56266 -29.73029 -27.52217 -26.73945 -25.00392 -24.06979 -23.91561 -22.70088 -21.90181 -21.54406 -20.10943 -19.12606 -18.39510 -18.19389 -17.65196 -17.40400 -16.76477 -16.73368 -16.54694 -16.23712 -16.08445 -15.80108 -15.23413 -15.07813 -14.83369 -14.76107 -14.46616 -14.35006 -14.11287 -13.78464 -13.69116 -13.53527 -13.44748 -13.25389 -13.10046 -13.07247 -12.89630 -12.64498 -12.28703 -12.07305 -12.05838 -11.93318 -11.80219 -11.57897 -11.48311 -10.91318 -10.72838 -10.54161 -9.45107 -9.27922 -8.81425 -8.71235 -7.81804 -5.10076 -0.16174 0.28151 1.01934 1.36657 1.42129 1.49559 1.69229 2.20964 2.44084 2.56660 2.80872 3.25280 3.45749 3.54147 3.61240 3.65525 3.74693 3.84463 3.98638 4.07524 4.19475 4.27813 4.33589 4.38365 4.43566 4.51614 4.56599 4.58110 4.65099 4.70777 4.82881 4.83635 4.87187 4.94692 4.95565 5.04986 5.13981 5.19951 5.20438 5.22011 5.42914 5.44716 5.48118 5.58246 5.73040 5.99939 6.21264 6.34363 6.82086 7.40147 7.63128 8.33755 8.57455 9.39813 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007617 B = 0.005128 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.274343 B = 5458.419946 C = 8376.138885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.460 5.460 3 C 0.135 3.865 4 C -0.264 4.264 5 C 0.570 3.430 6 O -0.545 6.545 7 N -0.617 5.617 8 C 0.079 3.921 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.132 3.868 12 H 0.039 0.961 13 C 0.143 3.857 14 N -0.738 5.738 15 C -0.245 4.245 16 H 0.066 0.934 17 C -0.078 4.078 18 N -0.955 5.955 19 Si 0.967 3.033 20 H -0.281 1.281 21 H -0.301 1.301 22 H -0.270 1.270 23 C -0.071 4.071 24 C -0.136 4.136 25 C 0.057 3.943 26 F -0.156 7.156 27 C -0.131 4.131 28 C -0.072 4.072 29 C 0.073 3.927 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.230 0.770 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.013 0.987 41 H 0.024 0.976 42 H 0.386 0.614 43 H 0.241 0.759 44 H 0.091 0.909 45 H 0.174 0.826 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.074 3.786 8.858 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.139 5.139 3 C 0.002 3.998 4 C -0.274 4.274 5 C 0.361 3.639 6 O -0.422 6.422 7 N -0.353 5.353 8 C -0.042 4.042 9 C -0.153 4.153 10 C -0.152 4.152 11 C 0.028 3.972 12 H 0.057 0.943 13 C 0.015 3.985 14 N -0.386 5.386 15 C -0.377 4.377 16 H 0.084 0.916 17 C -0.271 4.271 18 N -0.605 5.605 19 Si 0.797 3.203 20 H -0.208 1.208 21 H -0.228 1.228 22 H -0.195 1.195 23 C -0.076 4.076 24 C -0.156 4.156 25 C 0.037 3.963 26 F -0.135 7.135 27 C -0.151 4.151 28 C -0.091 4.091 29 C -0.032 4.032 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.246 0.754 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.224 0.776 43 H 0.050 0.950 44 H 0.109 0.891 45 H 0.191 0.809 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -29.786 3.424 8.635 31.201 hybrid contribution 2.320 -0.963 -0.841 2.649 sum -27.466 2.461 7.794 28.656 Atomic orbital electron populations 1.22582 0.72460 1.07297 1.05313 1.43961 1.08286 1.02589 1.59104 1.23209 0.88028 0.93544 0.95069 1.20044 0.93559 0.91603 1.22244 1.17544 0.88252 0.81357 0.76764 1.90915 1.26025 1.76020 1.49204 1.48333 1.11042 1.03873 1.72055 1.23029 0.85347 0.94748 1.01056 1.22833 0.97513 0.95725 0.99267 1.22631 0.97899 0.92482 1.02224 1.21798 0.90607 0.89615 0.95171 0.94290 1.21237 0.91727 0.90252 0.95269 1.43029 1.53343 1.33811 1.08448 1.19567 1.19945 1.09582 0.88626 0.91585 1.25586 1.02245 0.98900 1.00343 1.69986 1.39866 1.21306 1.29352 0.85229 0.78658 0.76413 0.80039 1.20764 1.22782 1.19525 1.18756 0.92881 0.92372 1.03605 1.20528 0.99476 0.92138 1.03486 1.17753 0.86484 0.84953 1.07104 1.91433 1.61817 1.65752 1.94485 1.21083 0.88366 1.02419 1.03229 1.20285 1.01174 0.86923 1.00733 1.18421 0.88398 0.90066 1.06285 0.89299 0.87704 0.86312 0.75375 0.89325 0.88290 0.90360 0.85846 0.88876 0.89152 0.96907 0.95816 0.77595 0.95021 0.89100 0.80892 0.79802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.99 127.77 1.40 1.64 16 2 N -0.46 -7.86 3.15 -538.57 -1.69 -9.55 16 3 C 0.13 2.82 9.63 83.70 0.81 3.63 16 4 C -0.26 -9.44 6.21 -19.01 -0.12 -9.56 16 5 C 0.57 25.29 7.54 86.51 0.65 25.94 16 6 O -0.55 -32.19 12.85 -4.24 -0.05 -32.25 16 7 N -0.62 -20.93 3.06 -792.03 -2.43 -23.36 16 8 C 0.08 1.39 5.10 86.93 0.44 1.84 16 9 C -0.12 -1.54 7.10 32.06 0.23 -1.31 16 10 C -0.11 -2.39 6.43 31.78 0.20 -2.19 16 11 C 0.13 4.75 3.02 45.34 0.14 4.89 16 12 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 13 C 0.14 6.57 5.61 86.38 0.48 7.06 16 14 N -0.74 -44.88 4.40 -343.45 -1.51 -46.39 16 15 C -0.24 -15.95 9.99 84.03 0.84 -15.11 16 16 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -5.22 5.50 84.86 0.47 -4.75 16 18 N -0.95 -68.72 13.06 21.65 0.28 -68.44 16 19 Si 0.97 52.86 29.55 68.60 2.03 54.89 16 20 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 21 H -0.30 -16.66 7.11 99.48 0.71 -15.95 16 22 H -0.27 -13.89 7.11 99.48 0.71 -13.19 16 23 C -0.07 -2.70 6.27 -20.08 -0.13 -2.83 16 24 C -0.14 -6.02 9.83 22.45 0.22 -5.80 16 25 C 0.06 2.08 7.29 22.37 0.16 2.24 16 26 F -0.16 -6.14 17.26 44.97 0.78 -5.36 16 27 C -0.13 -3.21 9.99 22.32 0.22 -2.98 16 28 C -0.07 -1.39 9.91 22.37 0.22 -1.16 16 29 C 0.07 1.85 6.79 38.90 0.26 2.12 16 30 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.10 0.07 8.03 -2.39 -0.02 0.05 16 32 H 0.12 -0.21 8.13 -2.39 -0.02 -0.23 16 33 H 0.23 2.51 4.69 -2.91 -0.01 2.50 16 34 H 0.09 1.18 7.71 -2.39 -0.02 1.16 16 35 H 0.10 1.24 6.00 -2.39 -0.01 1.23 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.71 7.85 -2.38 -0.02 1.69 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.02 1.06 8.08 -2.38 -0.02 1.04 16 42 H 0.39 25.83 5.12 -92.70 -0.47 25.36 16 43 H 0.24 16.87 8.31 -92.71 -0.77 16.10 16 44 H 0.09 5.03 7.47 -2.91 -0.02 5.01 16 45 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.18 1.52 8.02 -2.91 -0.02 1.50 16 Total: -1.00 -106.18 375.96 4.46 -101.72 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.54 Total: 25.09 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.51 Total: 3.65 kcal Atomic # 7 Polarization: -142.39 SS G_CDS: -5.35 Total: -147.74 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.78 Total: -5.36 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.03 Total: 54.89 kcal Total: -106.18 4.46 -101.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.673 kcal (2) G-P(sol) polarization free energy of solvation -106.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds