Wall clock time and date at job start Wed Apr 1 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35455 * 124.79457 * 2 1 4 4 C 1.36382 * 109.77327 * 180.02562 * 3 2 1 5 5 C 1.46896 * 126.76288 * 179.73473 * 4 3 2 6 6 O 1.21678 * 120.00442 * 171.66325 * 5 4 3 7 7 N 1.34780 * 120.00265 * 351.66852 * 5 4 3 8 8 C 1.47422 * 125.64529 * 0.78635 * 7 5 4 9 9 C 1.54904 * 104.83207 * 204.09433 * 8 7 5 10 10 C 1.55153 * 101.58148 * 322.98970 * 9 8 7 11 11 C 1.47022 * 125.65171 * 180.48225 * 7 5 4 12 12 H 1.08995 * 109.88394 * 59.55428 * 11 7 5 13 13 C 1.53005 * 109.87794 * 298.39332 * 11 7 5 14 14 N 1.46498 * 109.47343 * 75.45646 * 13 11 7 15 15 C 1.36937 * 119.99884 * 187.40507 * 14 13 11 16 16 H 1.07996 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99707 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99946 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46869 * 89.99996 * 19 17 15 21 21 H 1.48497 * 109.47132 * 210.00191 * 19 17 15 22 22 H 1.48504 * 109.46689 * 330.00076 * 19 17 15 23 23 C 1.47448 * 106.47541 * 359.97438 * 4 3 2 24 24 C 1.39284 * 133.97875 * 179.97438 * 23 4 3 25 25 C 1.37955 * 119.64897 * 180.02562 * 24 23 4 26 26 F 1.35103 * 119.87480 * 179.97438 * 25 24 23 27 27 C 1.38946 * 120.24639 * 359.97438 * 25 24 23 28 28 C 1.37747 * 120.61022 * 359.97438 * 27 25 24 29 29 C 1.38059 * 124.79148 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47017 * 90.02456 * 1 2 3 31 31 H 1.08995 * 109.47256 * 210.02466 * 1 2 3 32 32 H 1.09008 * 109.47261 * 330.03013 * 1 2 3 33 33 H 1.07996 * 125.11322 * 0.02562 * 3 2 1 34 34 H 1.09005 * 110.36848 * 322.93384 * 8 7 5 35 35 H 1.08996 * 110.36802 * 85.25114 * 8 7 5 36 36 H 1.09002 * 111.00823 * 81.06687 * 9 8 7 37 37 H 1.09008 * 111.00645 * 204.91672 * 9 8 7 38 38 H 1.09010 * 110.72131 * 153.86886 * 10 9 8 39 39 H 1.09005 * 110.72082 * 276.96041 * 10 9 8 40 40 H 1.09000 * 109.46844 * 195.45652 * 13 11 7 41 41 H 1.09002 * 109.46984 * 315.44980 * 13 11 7 42 42 H 0.96998 * 119.99539 * 7.40863 * 14 13 11 43 43 H 0.97002 * 119.99601 * 179.97438 * 18 17 15 44 44 H 1.07999 * 120.17740 * 0.03192 * 24 23 4 45 45 H 1.08003 * 119.69273 * 179.97438 * 27 25 24 46 46 H 1.08000 * 120.01485 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7589 -0.0006 5 6 4.7093 1.6676 -0.0062 6 8 5.8325 1.2255 0.1467 7 7 4.5241 2.9912 -0.1806 8 6 3.2227 3.6604 -0.3598 9 6 3.5525 4.9739 -1.1117 10 6 4.9065 5.3707 -0.4664 11 6 5.5858 4.0075 -0.2175 12 1 6.2809 3.7882 -1.0279 13 6 6.3307 4.0304 1.1188 14 7 7.2219 2.8707 1.2011 15 6 7.8805 2.5949 2.3696 16 1 7.7431 3.2325 3.2303 17 6 8.7254 1.4962 2.4474 18 7 8.8939 0.7200 1.3979 19 14 9.6233 1.1195 4.0416 20 1 8.7875 0.2235 4.8805 21 1 10.9137 0.4510 3.7368 22 1 9.8822 2.3848 4.7747 23 6 3.5926 -0.7151 -0.0003 24 6 4.6191 -1.6565 -0.0011 25 6 4.3116 -3.0014 -0.0011 26 9 5.3037 -3.9185 -0.0024 27 6 2.9856 -3.4162 0.0002 28 6 1.9622 -2.4942 0.0020 29 6 2.2527 -1.1338 0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8903 0.5134 33 1 1.8669 2.1266 0.0004 34 1 2.5555 3.0387 -0.9568 35 1 2.7727 3.8801 0.6083 36 1 3.6669 4.7941 -2.1807 37 1 2.7929 5.7329 -0.9239 38 1 5.4969 5.9789 -1.1519 39 1 4.7458 5.8980 0.4740 40 1 6.9179 4.9458 1.1917 41 1 5.6109 3.9944 1.9366 42 1 7.3456 2.2983 0.4279 43 1 9.4847 -0.0475 1.4522 44 1 5.6502 -1.3354 -0.0016 45 1 2.7551 -4.4714 -0.0002 46 1 0.9349 -2.8273 0.0035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324175366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:05 Heat of formation + Delta-G solvation = 34.284881 kcal Electronic energy + Delta-G solvation = -30975.002326 eV Core-core repulsion = 26781.493424 eV Total energy + Delta-G solvation = -4193.508903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.50488 -41.53750 -39.50575 -36.88253 -36.70990 -34.22725 -32.98222 -31.43011 -31.10782 -30.05782 -29.15817 -28.40249 -26.70227 -25.04925 -23.51300 -22.96672 -22.24369 -21.48898 -20.91720 -20.34940 -18.77875 -17.48121 -17.08014 -16.70673 -16.50907 -16.17918 -15.67330 -15.39704 -15.11097 -14.96929 -14.66293 -14.25909 -13.94928 -13.65900 -13.50737 -13.36184 -13.19044 -12.90301 -12.85473 -12.85171 -12.66937 -12.47721 -12.30864 -12.17468 -11.65512 -11.42110 -11.11333 -11.05313 -10.94312 -10.80959 -10.63402 -10.53826 -10.40605 -9.84535 -9.57945 -9.43336 -8.84044 -8.57694 -8.18576 -8.03079 -7.61056 -6.48058 -5.37594 -2.64479 0.96497 1.43307 2.17371 2.55433 3.42673 3.61870 3.65695 3.65841 3.67964 4.12775 4.38279 4.43700 4.51707 4.59053 4.63998 4.69703 4.83833 4.86937 4.97136 4.98110 5.08905 5.21448 5.30556 5.36765 5.37758 5.48065 5.55073 5.70585 5.74901 5.76686 5.88837 5.90668 6.01300 6.03791 6.16497 6.26886 6.29193 6.38020 6.54335 6.65032 6.68946 6.78839 6.92076 7.04932 7.12964 7.15292 7.96519 8.12156 8.76026 9.05907 9.92746 10.58789 10.98803 11.83216 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.005057 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.193164 B = 5535.069064 C = 8497.934081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.477 5.477 3 C 0.079 3.921 4 C -0.196 4.196 5 C 0.577 3.423 6 O -0.454 6.454 7 N -0.616 5.616 8 C 0.089 3.911 9 C -0.132 4.132 10 C -0.124 4.124 11 C 0.133 3.867 12 H 0.073 0.927 13 C 0.146 3.854 14 N -0.718 5.718 15 C -0.236 4.236 16 H 0.059 0.941 17 C -0.008 4.008 18 N -0.914 5.914 19 Si 0.894 3.106 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.285 1.285 23 C -0.038 4.038 24 C -0.084 4.084 25 C 0.070 3.930 26 F -0.140 7.140 27 C -0.132 4.132 28 C -0.104 4.104 29 C 0.076 3.924 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.188 0.812 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.400 0.600 43 H 0.248 0.752 44 H 0.155 0.845 45 H 0.136 0.864 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.017 2.034 -7.938 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.159 5.159 3 C -0.050 4.050 4 C -0.207 4.207 5 C 0.365 3.635 6 O -0.324 6.324 7 N -0.354 5.354 8 C -0.035 4.035 9 C -0.170 4.170 10 C -0.163 4.163 11 C 0.030 3.970 12 H 0.091 0.909 13 C 0.017 3.983 14 N -0.369 5.369 15 C -0.368 4.368 16 H 0.077 0.923 17 C -0.205 4.205 18 N -0.562 5.562 19 Si 0.726 3.274 20 H -0.222 1.222 21 H -0.220 1.220 22 H -0.212 1.212 23 C -0.043 4.043 24 C -0.103 4.103 25 C 0.050 3.950 26 F -0.119 7.119 27 C -0.152 4.152 28 C -0.125 4.125 29 C -0.028 4.028 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.205 0.795 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.241 0.759 43 H 0.058 0.942 44 H 0.173 0.827 45 H 0.154 0.846 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.583 1.612 -7.706 24.862 hybrid contribution 0.476 -0.522 0.889 1.136 sum -23.107 1.091 -6.817 24.116 Atomic orbital electron populations 1.22010 0.76840 1.04503 1.03191 1.43562 1.06099 1.04233 1.62012 1.22890 0.90110 0.91657 1.00383 1.20165 0.92261 0.92091 1.16179 1.16904 0.88284 0.79960 0.78345 1.90997 1.22705 1.74192 1.44475 1.48262 1.06831 1.05568 1.74695 1.22586 0.87522 0.93955 0.99406 1.22765 0.97802 0.96448 1.00023 1.22631 0.95887 0.96362 1.01398 1.21845 0.89328 0.86084 0.99743 0.90858 1.20969 0.92343 0.92254 0.92721 1.42805 1.50853 1.28838 1.14452 1.19107 1.18995 1.07799 0.90894 0.92272 1.24646 1.00963 0.98188 0.96703 1.69738 1.40857 1.17659 1.27932 0.86393 0.79297 0.77699 0.84033 1.22169 1.22014 1.21154 1.18429 0.91125 0.91782 1.02961 1.20832 1.01584 0.89838 0.98093 1.17368 0.84837 0.86201 1.06574 1.91493 1.60609 1.65513 1.94287 1.20716 0.90559 1.00098 1.03821 1.19679 0.99077 0.88503 1.05234 1.18248 0.89840 0.88267 1.06465 0.90980 0.89885 0.89650 0.79518 0.90627 0.91774 0.90709 0.90259 0.90225 0.90458 0.96741 0.96514 0.75853 0.94154 0.82692 0.84611 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.99 59.84 0.66 1.07 16 2 N -0.48 -5.12 3.15 -121.58 -0.38 -5.50 16 3 C 0.08 0.94 9.62 -16.62 -0.16 0.78 16 4 C -0.20 -3.34 6.22 -103.31 -0.64 -3.98 16 5 C 0.58 11.72 7.62 -12.76 -0.10 11.63 16 6 O -0.45 -11.81 12.49 5.21 0.07 -11.74 16 7 N -0.62 -10.18 3.06 -164.46 -0.50 -10.69 16 8 C 0.09 0.94 5.25 -2.53 -0.01 0.93 16 9 C -0.13 -1.18 7.09 -24.59 -0.17 -1.35 16 10 C -0.12 -1.45 6.45 -24.90 -0.16 -1.61 16 11 C 0.13 2.30 3.06 -66.95 -0.20 2.09 16 12 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 13 C 0.15 3.21 5.62 -4.04 -0.02 3.19 16 14 N -0.72 -20.24 4.21 -59.91 -0.25 -20.49 16 15 C -0.24 -7.28 9.99 -15.06 -0.15 -7.43 16 16 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.91 -30.24 13.06 55.49 0.72 -29.52 16 19 Si 0.89 24.37 29.55 -169.99 -5.02 19.35 16 20 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 21 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 C -0.04 -0.67 6.27 -104.95 -0.66 -1.33 16 24 C -0.08 -1.60 9.84 -39.30 -0.39 -1.99 16 25 C 0.07 1.17 7.29 -39.42 -0.29 0.88 16 26 F -0.14 -2.47 17.26 2.25 0.04 -2.43 16 27 C -0.13 -1.70 9.99 -39.50 -0.39 -2.09 16 28 C -0.10 -1.21 9.91 -39.44 -0.39 -1.60 16 29 C 0.08 1.03 6.79 -83.93 -0.57 0.46 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 32 H 0.08 0.30 8.13 -51.92 -0.42 -0.12 16 33 H 0.19 1.55 4.64 -52.49 -0.24 1.31 16 34 H 0.08 0.65 5.38 -51.93 -0.28 0.37 16 35 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 39 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 40 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.40 12.07 5.05 -40.82 -0.21 11.87 16 43 H 0.25 7.99 8.31 -40.82 -0.34 7.65 16 44 H 0.16 3.47 7.49 -52.49 -0.39 3.08 16 45 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 46 H 0.13 1.00 8.01 -52.49 -0.42 0.58 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -39.83 375.28 -9.56 -49.39 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.13 Total: 6.69 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.75 Total: -0.71 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -0.41 Total: -66.20 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.02 Total: 19.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.83 -9.56 -49.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.671 kcal (2) G-P(sol) polarization free energy of solvation -39.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds