Wall clock time and date at job start Wed Apr 1 2020 03:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35455 * 124.79457 * 2 1 4 4 C 1.36382 * 109.77327 * 180.02562 * 3 2 1 5 5 C 1.46896 * 126.76288 * 179.73473 * 4 3 2 6 6 O 1.21678 * 120.00442 * 171.66325 * 5 4 3 7 7 N 1.34780 * 120.00265 * 351.66852 * 5 4 3 8 8 C 1.47422 * 125.64529 * 0.78635 * 7 5 4 9 9 C 1.54904 * 104.83207 * 204.09433 * 8 7 5 10 10 C 1.55153 * 101.58148 * 322.98970 * 9 8 7 11 11 C 1.47022 * 125.65171 * 180.48225 * 7 5 4 12 12 H 1.08995 * 109.88394 * 59.55428 * 11 7 5 13 13 C 1.53005 * 109.87794 * 298.39332 * 11 7 5 14 14 N 1.46498 * 109.47343 * 75.45646 * 13 11 7 15 15 C 1.36937 * 119.99884 * 187.40507 * 14 13 11 16 16 H 1.07996 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99707 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99946 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46869 * 89.99996 * 19 17 15 21 21 H 1.48497 * 109.47132 * 210.00191 * 19 17 15 22 22 H 1.48504 * 109.46689 * 330.00076 * 19 17 15 23 23 C 1.47448 * 106.47541 * 359.97438 * 4 3 2 24 24 C 1.39284 * 133.97875 * 179.97438 * 23 4 3 25 25 C 1.37955 * 119.64897 * 180.02562 * 24 23 4 26 26 F 1.35103 * 119.87480 * 179.97438 * 25 24 23 27 27 C 1.38946 * 120.24639 * 359.97438 * 25 24 23 28 28 C 1.37747 * 120.61022 * 359.97438 * 27 25 24 29 29 C 1.38059 * 124.79148 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47017 * 90.02456 * 1 2 3 31 31 H 1.08995 * 109.47256 * 210.02466 * 1 2 3 32 32 H 1.09008 * 109.47261 * 330.03013 * 1 2 3 33 33 H 1.07996 * 125.11322 * 0.02562 * 3 2 1 34 34 H 1.09005 * 110.36848 * 322.93384 * 8 7 5 35 35 H 1.08996 * 110.36802 * 85.25114 * 8 7 5 36 36 H 1.09002 * 111.00823 * 81.06687 * 9 8 7 37 37 H 1.09008 * 111.00645 * 204.91672 * 9 8 7 38 38 H 1.09010 * 110.72131 * 153.86886 * 10 9 8 39 39 H 1.09005 * 110.72082 * 276.96041 * 10 9 8 40 40 H 1.09000 * 109.46844 * 195.45652 * 13 11 7 41 41 H 1.09002 * 109.46984 * 315.44980 * 13 11 7 42 42 H 0.96998 * 119.99539 * 7.40863 * 14 13 11 43 43 H 0.97002 * 119.99601 * 179.97438 * 18 17 15 44 44 H 1.07999 * 120.17740 * 0.03192 * 24 23 4 45 45 H 1.08003 * 119.69273 * 179.97438 * 27 25 24 46 46 H 1.08000 * 120.01485 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7589 -0.0006 5 6 4.7093 1.6676 -0.0062 6 8 5.8325 1.2255 0.1467 7 7 4.5241 2.9912 -0.1806 8 6 3.2227 3.6604 -0.3598 9 6 3.5525 4.9739 -1.1117 10 6 4.9065 5.3707 -0.4664 11 6 5.5858 4.0075 -0.2175 12 1 6.2809 3.7882 -1.0279 13 6 6.3307 4.0304 1.1188 14 7 7.2219 2.8707 1.2011 15 6 7.8805 2.5949 2.3696 16 1 7.7431 3.2325 3.2303 17 6 8.7254 1.4962 2.4474 18 7 8.8939 0.7200 1.3979 19 14 9.6233 1.1195 4.0416 20 1 8.7875 0.2235 4.8805 21 1 10.9137 0.4510 3.7368 22 1 9.8822 2.3848 4.7747 23 6 3.5926 -0.7151 -0.0003 24 6 4.6191 -1.6565 -0.0011 25 6 4.3116 -3.0014 -0.0011 26 9 5.3037 -3.9185 -0.0024 27 6 2.9856 -3.4162 0.0002 28 6 1.9622 -2.4942 0.0020 29 6 2.2527 -1.1338 0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8903 0.5134 33 1 1.8669 2.1266 0.0004 34 1 2.5555 3.0387 -0.9568 35 1 2.7727 3.8801 0.6083 36 1 3.6669 4.7941 -2.1807 37 1 2.7929 5.7329 -0.9239 38 1 5.4969 5.9789 -1.1519 39 1 4.7458 5.8980 0.4740 40 1 6.9179 4.9458 1.1917 41 1 5.6109 3.9944 1.9366 42 1 7.3456 2.2983 0.4279 43 1 9.4847 -0.0475 1.4522 44 1 5.6502 -1.3354 -0.0016 45 1 2.7551 -4.4714 -0.0002 46 1 0.9349 -2.8273 0.0035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324175366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:04 Heat of formation + Delta-G solvation = 6.018038 kcal Electronic energy + Delta-G solvation = -30976.228069 eV Core-core repulsion = 26781.493424 eV Total energy + Delta-G solvation = -4194.734645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87124 -42.58328 -40.77699 -38.14303 -37.90214 -36.22420 -34.12654 -33.21214 -32.43254 -31.08597 -30.58685 -29.71629 -27.51912 -26.74493 -24.99691 -24.07301 -23.91642 -22.70364 -21.89315 -21.54090 -20.11358 -19.14612 -18.38865 -18.17524 -17.67665 -17.34701 -16.76336 -16.72866 -16.53458 -16.23708 -16.09784 -15.78128 -15.22271 -15.09657 -14.84972 -14.73105 -14.48770 -14.33742 -14.11064 -13.78429 -13.68080 -13.50475 -13.46050 -13.21978 -13.09048 -13.06192 -12.89735 -12.65802 -12.25934 -12.06480 -12.05573 -11.92492 -11.76282 -11.56504 -11.47222 -10.90347 -10.72597 -10.46507 -9.45215 -9.27747 -8.77344 -8.70813 -7.79879 -5.07129 -0.15905 0.28337 1.02848 1.36889 1.42155 1.49908 1.69563 2.21803 2.44331 2.57813 2.81260 3.25446 3.47401 3.54485 3.61863 3.65058 3.73922 3.84575 3.98279 4.07707 4.17125 4.27155 4.34748 4.39890 4.43760 4.52864 4.57632 4.58963 4.65163 4.71334 4.83538 4.83994 4.88135 4.95034 4.95810 5.05199 5.14189 5.20346 5.20770 5.22657 5.43052 5.45295 5.48634 5.58512 5.73356 6.00204 6.21535 6.36237 6.82687 7.41779 7.65663 8.37103 8.62215 9.41817 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.005057 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.193164 B = 5535.069064 C = 8497.934081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.460 5.460 3 C 0.131 3.869 4 C -0.263 4.263 5 C 0.564 3.436 6 O -0.537 6.537 7 N -0.616 5.616 8 C 0.077 3.923 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.132 3.868 12 H 0.040 0.960 13 C 0.143 3.857 14 N -0.735 5.735 15 C -0.243 4.243 16 H 0.065 0.935 17 C -0.078 4.078 18 N -0.954 5.954 19 Si 0.966 3.034 20 H -0.296 1.296 21 H -0.294 1.294 22 H -0.264 1.264 23 C -0.071 4.071 24 C -0.136 4.136 25 C 0.057 3.943 26 F -0.156 7.156 27 C -0.131 4.131 28 C -0.072 4.072 29 C 0.073 3.927 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.023 0.977 41 H 0.011 0.989 42 H 0.387 0.613 43 H 0.240 0.760 44 H 0.091 0.909 45 H 0.173 0.827 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.575 3.729 -7.717 31.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.140 5.140 3 C -0.002 4.002 4 C -0.273 4.273 5 C 0.355 3.645 6 O -0.413 6.413 7 N -0.352 5.352 8 C -0.044 4.044 9 C -0.153 4.153 10 C -0.153 4.153 11 C 0.028 3.972 12 H 0.058 0.942 13 C 0.015 3.985 14 N -0.384 5.384 15 C -0.375 4.375 16 H 0.083 0.917 17 C -0.271 4.271 18 N -0.604 5.604 19 Si 0.795 3.205 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.076 4.076 24 C -0.156 4.156 25 C 0.037 3.963 26 F -0.135 7.135 27 C -0.151 4.151 28 C -0.091 4.091 29 C -0.032 4.032 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.249 0.751 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.226 0.774 43 H 0.049 0.951 44 H 0.109 0.891 45 H 0.191 0.809 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -30.252 3.384 -7.486 31.348 hybrid contribution 2.332 -0.963 0.783 2.642 sum -27.920 2.421 -6.703 28.815 Atomic orbital electron populations 1.22579 0.72471 1.07030 1.05570 1.43978 1.08283 1.02592 1.59109 1.23353 0.88065 0.93590 0.95200 1.20033 0.93531 0.91589 1.22169 1.17621 0.88408 0.81423 0.77092 1.90949 1.25861 1.75871 1.48628 1.48348 1.09180 1.04514 1.73151 1.23048 0.85049 0.94852 1.01469 1.22798 0.96698 0.96134 0.99706 1.22622 0.97322 0.92554 1.02767 1.21805 0.89853 0.89892 0.95634 0.94187 1.21196 0.91689 0.90077 0.95500 1.43088 1.51731 1.30345 1.13244 1.19564 1.18463 1.07586 0.91909 0.91745 1.25557 1.02693 0.98427 1.00387 1.69989 1.41900 1.18104 1.30451 0.85246 0.77510 0.77972 0.79730 1.22344 1.22075 1.18832 1.18749 0.92867 0.92354 1.03647 1.20531 0.99481 0.92143 1.03472 1.17758 0.86479 0.84956 1.07118 1.91436 1.61829 1.65751 1.94487 1.21080 0.88366 1.02416 1.03228 1.20279 1.01163 0.86938 1.00747 1.18421 0.88402 0.90065 1.06268 0.88562 0.88049 0.86713 0.75112 0.87971 0.89540 0.90218 0.85888 0.88809 0.89325 0.95968 0.97129 0.77404 0.95111 0.89109 0.80910 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 10.99 127.77 1.40 1.63 16 2 N -0.46 -7.75 3.15 -538.58 -1.69 -9.45 16 3 C 0.13 2.71 9.62 83.70 0.81 3.51 16 4 C -0.26 -9.33 6.22 -19.02 -0.12 -9.45 16 5 C 0.56 24.98 7.62 86.51 0.66 25.64 16 6 O -0.54 -31.76 12.49 -4.28 -0.05 -31.81 16 7 N -0.62 -20.88 3.06 -792.46 -2.43 -23.31 16 8 C 0.08 1.35 5.25 86.85 0.46 1.81 16 9 C -0.12 -1.53 7.09 31.98 0.23 -1.30 16 10 C -0.11 -2.40 6.45 31.78 0.20 -2.20 16 11 C 0.13 4.75 3.06 45.34 0.14 4.89 16 12 H 0.04 1.68 8.11 -2.39 -0.02 1.66 16 13 C 0.14 6.62 5.62 86.38 0.49 7.11 16 14 N -0.74 -44.79 4.21 -343.45 -1.45 -46.23 16 15 C -0.24 -15.88 9.99 84.03 0.84 -15.04 16 16 H 0.06 4.02 7.83 -2.91 -0.02 4.00 16 17 C -0.08 -5.23 5.50 84.86 0.47 -4.77 16 18 N -0.95 -68.72 13.06 21.65 0.28 -68.44 16 19 Si 0.97 53.06 29.55 68.60 2.03 55.09 16 20 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 21 H -0.29 -16.03 7.11 99.48 0.71 -15.32 16 22 H -0.26 -13.38 7.11 99.48 0.71 -12.68 16 23 C -0.07 -2.69 6.27 -20.08 -0.13 -2.82 16 24 C -0.14 -6.01 9.84 22.45 0.22 -5.79 16 25 C 0.06 2.07 7.29 22.37 0.16 2.23 16 26 F -0.16 -6.14 17.26 44.97 0.78 -5.36 16 27 C -0.13 -3.19 9.99 22.32 0.22 -2.97 16 28 C -0.07 -1.38 9.91 22.36 0.22 -1.16 16 29 C 0.07 1.84 6.79 38.89 0.26 2.11 16 30 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.10 0.12 8.03 -2.39 -0.02 0.10 16 32 H 0.11 -0.13 8.13 -2.38 -0.02 -0.14 16 33 H 0.23 2.48 4.64 -2.91 -0.01 2.46 16 34 H 0.10 1.25 5.38 -2.38 -0.01 1.23 16 35 H 0.09 1.21 8.00 -2.39 -0.02 1.19 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.09 1.70 7.85 -2.38 -0.02 1.68 16 40 H 0.02 1.00 8.09 -2.39 -0.02 0.98 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.39 25.85 5.05 -92.71 -0.47 25.39 16 43 H 0.24 16.83 8.31 -92.71 -0.77 16.06 16 44 H 0.09 5.03 7.49 -2.91 -0.02 5.01 16 45 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 46 H 0.18 1.50 8.01 -2.91 -0.02 1.48 16 Total: -1.00 -106.22 375.28 4.55 -101.66 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.55 Total: 24.41 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.53 Total: 3.44 kcal Atomic # 7 Polarization: -142.14 SS G_CDS: -5.29 Total: -147.43 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.81 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.78 Total: -5.36 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 2.03 Total: 55.09 kcal Total: -106.22 4.55 -101.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.683 kcal (2) G-P(sol) polarization free energy of solvation -106.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds