Wall clock time and date at job start Wed Apr 1 2020 03:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34455 * 125.76782 * 2 1 4 4 C 1.38073 * 107.39028 * 180.14563 * 3 2 1 5 5 C 1.47360 * 126.40995 * 179.87288 * 4 3 2 6 6 O 1.34253 * 127.19382 * 6.22227 * 5 4 3 7 7 N 1.20738 * 111.94727 * 180.28075 * 6 5 4 8 8 C 1.29875 * 112.81635 * 359.75864 * 7 6 5 9 9 C 1.39932 * 127.19136 * 186.10134 * 5 4 3 10 10 C 1.46909 * 128.39905 * 0.02562 * 9 5 4 11 11 O 1.21669 * 120.00066 * 44.26400 * 10 9 5 12 12 N 1.34774 * 120.00072 * 224.25726 * 10 9 5 13 13 C 1.47425 * 125.65010 * 6.16432 * 12 10 9 14 14 C 1.54906 * 104.83624 * 155.91425 * 13 12 10 15 15 C 1.55154 * 101.58080 * 37.00570 * 14 13 12 16 16 C 1.47028 * 125.64931 * 186.21084 * 12 10 9 17 17 H 1.09005 * 110.00913 * 300.50305 * 16 12 10 18 18 C 1.52992 * 109.88232 * 61.59830 * 16 12 10 19 19 N 1.46502 * 109.47396 * 285.09273 * 18 16 12 20 20 C 1.36938 * 120.00331 * 171.87793 * 19 18 16 21 21 H 1.08000 * 119.99630 * 4.04844 * 20 19 18 22 22 C 1.38811 * 119.99936 * 184.05076 * 20 19 18 23 23 N 1.31622 * 120.00253 * 4.88741 * 22 20 19 24 24 Si 1.86797 * 119.99677 * 184.88633 * 22 20 19 25 25 H 1.48508 * 109.47181 * 270.00202 * 24 22 20 26 26 H 1.48500 * 109.47410 * 29.99898 * 24 22 20 27 27 H 1.48500 * 109.47091 * 150.00191 * 24 22 20 28 28 C 1.41295 * 107.17865 * 359.60739 * 4 3 2 29 29 N 1.30483 * 108.05609 * 0.23946 * 28 4 3 30 30 H 1.08994 * 109.46955 * 270.31419 * 1 2 3 31 31 H 1.08996 * 109.46655 * 30.31987 * 1 2 3 32 32 H 1.09000 * 109.46704 * 150.31919 * 1 2 3 33 33 H 1.08004 * 126.30476 * 359.97438 * 3 2 1 34 34 H 1.07998 * 126.79080 * 179.97438 * 8 7 6 35 35 H 1.08999 * 110.36685 * 37.06811 * 13 12 10 36 36 H 1.08998 * 110.45757 * 274.79875 * 13 12 10 37 37 H 1.08999 * 111.00010 * 278.93372 * 14 13 12 38 38 H 1.08998 * 111.03738 * 155.10114 * 14 13 12 39 39 H 1.09000 * 110.72116 * 206.13766 * 15 14 13 40 40 H 1.09002 * 110.72264 * 82.86471 * 15 14 13 41 41 H 1.09001 * 109.47457 * 165.08871 * 18 16 12 42 42 H 1.09005 * 109.47193 * 45.09062 * 18 16 12 43 43 H 0.97000 * 119.99594 * 351.87843 * 19 18 16 44 44 H 0.96995 * 119.99406 * 354.70277 * 23 22 20 45 45 H 1.08002 * 125.97764 * 180.26721 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0910 0.0000 4 6 3.5612 0.6557 -0.0033 5 6 4.7652 1.5053 -0.0072 6 8 4.8155 2.8420 0.1077 7 7 5.9488 3.2563 0.0645 8 6 6.8262 2.3091 -0.0763 9 6 6.0951 1.0874 -0.1291 10 6 6.6117 -0.2794 -0.2814 11 8 6.0740 -1.0505 -1.0538 12 7 7.6815 -0.6791 0.4343 13 6 8.3477 0.1017 1.4926 14 6 9.0476 -0.9545 2.3838 15 6 9.5177 -1.9902 1.3285 16 6 8.3780 -1.9657 0.2883 17 1 7.6869 -2.7874 0.4762 18 6 8.9581 -2.0862 -1.1222 19 7 7.8785 -2.3662 -2.0721 20 6 8.1297 -2.3514 -3.4181 21 1 9.1365 -2.1981 -3.7778 22 6 7.0905 -2.5333 -4.3202 23 7 5.8510 -2.6239 -3.8867 24 14 7.4511 -2.6497 -6.1493 25 1 7.4046 -1.2925 -6.7503 26 1 8.8010 -3.2346 -6.3515 27 1 6.4344 -3.5144 -6.8002 28 6 3.5317 -0.7570 0.0039 29 7 2.2829 -1.1354 0.0059 30 1 -0.3633 0.0056 1.0276 31 1 -0.3632 0.8871 -0.5188 32 1 -0.3633 -0.8928 -0.5089 33 1 1.9185 2.1186 -0.0004 34 1 7.8980 2.4248 -0.1410 35 1 7.6124 0.6599 2.0721 36 1 9.0829 0.7801 1.0599 37 1 8.3432 -1.4028 3.0845 38 1 9.8972 -0.5205 2.9110 39 1 9.6111 -2.9802 1.7748 40 1 10.4595 -1.6795 0.8761 41 1 9.6847 -2.8983 -1.1481 42 1 9.4483 -1.1514 -1.3946 43 1 6.9857 -2.5621 -1.7474 44 1 5.6706 -2.6407 -2.9338 45 1 4.3922 -1.4096 0.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324200759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:04 Heat of formation + Delta-G solvation = 147.738465 kcal Electronic energy + Delta-G solvation = -31361.594661 eV Core-core repulsion = 27192.925437 eV Total energy + Delta-G solvation = -4168.669224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.73540 -41.15594 -39.82074 -37.12699 -34.57752 -33.84785 -33.64415 -32.21763 -31.36946 -31.21899 -29.46277 -28.48809 -26.90602 -25.19486 -24.37280 -23.02742 -22.74061 -21.78283 -21.27373 -20.77926 -20.30361 -18.87290 -17.93455 -17.56967 -17.26996 -16.65366 -16.40930 -15.95149 -15.56564 -15.32155 -14.86085 -14.17126 -14.02662 -13.78446 -13.43848 -13.43568 -13.28914 -13.17496 -13.10893 -12.94156 -12.85323 -12.66813 -12.16601 -12.01975 -11.54462 -11.44411 -11.23091 -10.88742 -10.72442 -10.62379 -10.53505 -10.40054 -10.32543 -10.11320 -9.84940 -9.54860 -9.33918 -8.92281 -8.55349 -8.20746 -8.01712 -6.60867 -5.74339 -2.72361 0.88923 1.94596 2.06092 2.30745 2.90729 2.99134 3.25075 3.44539 3.64461 3.70877 3.84391 4.23773 4.31621 4.57375 4.60057 4.63873 4.75982 4.87680 4.92363 4.94169 5.02946 5.13097 5.19405 5.32085 5.34205 5.40203 5.44461 5.57402 5.69260 5.72324 5.77796 5.83590 5.88854 5.96123 5.97153 6.03864 6.19045 6.39819 6.48363 6.58186 6.75620 6.78619 6.94194 7.61962 7.85087 8.08667 8.26186 8.63507 9.17752 9.70900 10.51747 10.69525 11.76667 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007587 B = 0.004986 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3689.459665 B = 5614.751474 C = 7598.466733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.366 5.366 3 C 0.098 3.902 4 C -0.195 4.195 5 C 0.124 3.876 6 O 0.096 5.904 7 N -0.373 5.373 8 C 0.036 3.964 9 C -0.242 4.242 10 C 0.602 3.398 11 O -0.468 6.468 12 N -0.608 5.608 13 C 0.101 3.899 14 C -0.131 4.131 15 C -0.124 4.124 16 C 0.130 3.870 17 H 0.075 0.925 18 C 0.151 3.849 19 N -0.733 5.733 20 C -0.335 4.335 21 H 0.053 0.947 22 C -0.041 4.041 23 N -0.940 5.940 24 Si 1.076 2.924 25 H -0.300 1.300 26 H -0.298 1.298 27 H -0.290 1.290 28 C 0.115 3.885 29 N -0.293 5.293 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.017 0.983 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.270 0.730 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 9.351 17.322 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.144 5.144 3 C -0.053 4.053 4 C -0.208 4.208 5 C 0.058 3.942 6 O 0.036 5.964 7 N -0.080 5.080 8 C -0.144 4.144 9 C -0.251 4.251 10 C 0.389 3.611 11 O -0.339 6.339 12 N -0.345 5.345 13 C -0.022 4.022 14 C -0.169 4.169 15 C -0.162 4.162 16 C 0.027 3.973 17 H 0.093 0.907 18 C 0.022 3.978 19 N -0.385 5.385 20 C -0.467 4.467 21 H 0.071 0.929 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.908 3.092 25 H -0.228 1.228 26 H -0.225 1.225 27 H -0.216 1.216 28 C -0.072 4.072 29 N -0.112 5.112 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.204 0.796 34 H 0.210 0.790 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.223 0.777 44 H 0.082 0.918 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.772 9.164 15.349 18.785 hybrid contribution 1.532 0.324 1.258 2.009 sum -4.240 9.488 16.608 19.591 Atomic orbital electron populations 1.21956 0.73597 1.05083 1.03581 1.48402 1.07196 1.03972 1.54825 1.22979 0.90136 0.93832 0.98399 1.17795 0.88431 0.92086 1.22508 1.21911 0.92923 0.82779 0.96582 1.84768 1.24282 1.19776 1.67588 1.73465 0.89703 1.23621 1.21247 1.24861 1.01426 0.87448 1.00620 1.21216 0.92084 0.95866 1.15906 1.16317 0.79723 0.84917 0.80124 1.90840 1.56194 1.53220 1.33693 1.48252 1.30240 1.18494 1.37518 1.22264 0.96415 0.94610 0.88929 1.22749 1.00394 0.96530 0.97273 1.22634 0.98190 0.99958 0.95435 1.21920 0.93244 0.85526 0.96598 0.90735 1.20940 0.92252 0.97384 0.87206 1.42736 1.08314 1.85204 1.02257 1.19928 0.95116 1.47787 0.83860 0.92867 1.25535 0.92994 1.00997 1.04502 1.70638 1.18370 1.52346 1.17117 0.83320 0.74130 0.76044 0.75668 1.22807 1.22515 1.21636 1.24535 0.95441 0.93125 0.94111 1.77375 1.01656 1.06982 1.25176 0.90381 0.89186 0.88729 0.79648 0.78963 0.91079 0.91772 0.90703 0.90049 0.90086 0.90307 0.96530 0.96243 0.77721 0.91785 0.78160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.44 59.85 0.68 1.40 16 2 N -0.37 -4.62 3.99 -67.54 -0.27 -4.89 16 3 C 0.10 1.18 11.51 -16.46 -0.19 0.99 16 4 C -0.19 -3.05 6.12 -105.08 -0.64 -3.69 16 5 C 0.12 1.98 7.45 -35.24 -0.26 1.72 16 6 O 0.10 1.41 11.17 16.66 0.19 1.60 16 7 N -0.37 -5.64 11.97 30.85 0.37 -5.27 16 8 C 0.04 0.52 11.08 -16.75 -0.19 0.34 16 9 C -0.24 -4.11 5.45 -104.12 -0.57 -4.68 16 10 C 0.60 11.54 6.69 -12.75 -0.09 11.46 16 11 O -0.47 -11.09 10.06 5.22 0.05 -11.03 16 12 N -0.61 -9.76 3.07 -164.46 -0.50 -10.26 16 13 C 0.10 1.15 5.85 -2.53 -0.01 1.14 16 14 C -0.13 -1.22 7.08 -24.59 -0.17 -1.39 16 15 C -0.12 -1.42 6.45 -24.90 -0.16 -1.58 16 16 C 0.13 2.15 3.03 -66.96 -0.20 1.95 16 17 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 18 C 0.15 3.24 5.62 -4.04 -0.02 3.22 16 19 N -0.73 -20.06 4.37 -59.91 -0.26 -20.32 16 20 C -0.34 -10.28 9.99 -15.06 -0.15 -10.43 16 21 H 0.05 1.62 7.83 -52.49 -0.41 1.20 16 22 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 23 N -0.94 -31.42 13.69 55.49 0.76 -30.66 16 24 Si 1.08 28.17 29.92 -169.99 -5.09 23.08 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 26 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 C 0.12 2.05 10.86 -16.96 -0.18 1.86 16 29 N -0.29 -4.95 12.50 30.87 0.39 -4.56 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.19 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.19 2.33 7.87 -52.49 -0.41 1.91 16 35 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 36 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 41 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 10.90 4.01 -40.82 -0.16 10.73 16 44 H 0.27 9.04 6.13 -40.82 -0.25 8.79 16 45 H 0.20 3.90 5.30 -52.49 -0.28 3.62 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -40.22 372.12 -6.77 -46.99 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.76 Total: 8.79 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.25 Total: 0.93 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: 0.48 Total: -75.96 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.24 Total: -9.44 kcal Atomic # 14 Polarization: 28.17 SS G_CDS: -5.09 Total: 23.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.22 -6.77 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324200759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.728 kcal (2) G-P(sol) polarization free energy of solvation -40.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds