Wall clock time and date at job start Wed Apr 1 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34455 * 125.76782 * 2 1 4 4 C 1.38073 * 107.39028 * 180.14563 * 3 2 1 5 5 C 1.47360 * 126.40995 * 179.87288 * 4 3 2 6 6 O 1.34253 * 127.19382 * 6.22227 * 5 4 3 7 7 N 1.20738 * 111.94727 * 180.28075 * 6 5 4 8 8 C 1.29875 * 112.81635 * 359.75864 * 7 6 5 9 9 C 1.39932 * 127.19136 * 186.10134 * 5 4 3 10 10 C 1.46909 * 128.39905 * 0.02562 * 9 5 4 11 11 O 1.21669 * 120.00066 * 44.26400 * 10 9 5 12 12 N 1.34774 * 120.00072 * 224.25726 * 10 9 5 13 13 C 1.47425 * 125.65010 * 6.16432 * 12 10 9 14 14 C 1.54906 * 104.83624 * 155.91425 * 13 12 10 15 15 C 1.55154 * 101.58080 * 37.00570 * 14 13 12 16 16 C 1.47028 * 125.64931 * 186.21084 * 12 10 9 17 17 H 1.09005 * 110.00913 * 300.50305 * 16 12 10 18 18 C 1.52992 * 109.88232 * 61.59830 * 16 12 10 19 19 N 1.46502 * 109.47396 * 285.09273 * 18 16 12 20 20 C 1.36938 * 120.00331 * 171.87793 * 19 18 16 21 21 H 1.08000 * 119.99630 * 4.04844 * 20 19 18 22 22 C 1.38811 * 119.99936 * 184.05076 * 20 19 18 23 23 N 1.31622 * 120.00253 * 4.88741 * 22 20 19 24 24 Si 1.86797 * 119.99677 * 184.88633 * 22 20 19 25 25 H 1.48508 * 109.47181 * 270.00202 * 24 22 20 26 26 H 1.48500 * 109.47410 * 29.99898 * 24 22 20 27 27 H 1.48500 * 109.47091 * 150.00191 * 24 22 20 28 28 C 1.41295 * 107.17865 * 359.60739 * 4 3 2 29 29 N 1.30483 * 108.05609 * 0.23946 * 28 4 3 30 30 H 1.08994 * 109.46955 * 270.31419 * 1 2 3 31 31 H 1.08996 * 109.46655 * 30.31987 * 1 2 3 32 32 H 1.09000 * 109.46704 * 150.31919 * 1 2 3 33 33 H 1.08004 * 126.30476 * 359.97438 * 3 2 1 34 34 H 1.07998 * 126.79080 * 179.97438 * 8 7 6 35 35 H 1.08999 * 110.36685 * 37.06811 * 13 12 10 36 36 H 1.08998 * 110.45757 * 274.79875 * 13 12 10 37 37 H 1.08999 * 111.00010 * 278.93372 * 14 13 12 38 38 H 1.08998 * 111.03738 * 155.10114 * 14 13 12 39 39 H 1.09000 * 110.72116 * 206.13766 * 15 14 13 40 40 H 1.09002 * 110.72264 * 82.86471 * 15 14 13 41 41 H 1.09001 * 109.47457 * 165.08871 * 18 16 12 42 42 H 1.09005 * 109.47193 * 45.09062 * 18 16 12 43 43 H 0.97000 * 119.99594 * 351.87843 * 19 18 16 44 44 H 0.96995 * 119.99406 * 354.70277 * 23 22 20 45 45 H 1.08002 * 125.97764 * 180.26721 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0910 0.0000 4 6 3.5612 0.6557 -0.0033 5 6 4.7652 1.5053 -0.0072 6 8 4.8155 2.8420 0.1077 7 7 5.9488 3.2563 0.0645 8 6 6.8262 2.3091 -0.0763 9 6 6.0951 1.0874 -0.1291 10 6 6.6117 -0.2794 -0.2814 11 8 6.0740 -1.0505 -1.0538 12 7 7.6815 -0.6791 0.4343 13 6 8.3477 0.1017 1.4926 14 6 9.0476 -0.9545 2.3838 15 6 9.5177 -1.9902 1.3285 16 6 8.3780 -1.9657 0.2883 17 1 7.6869 -2.7874 0.4762 18 6 8.9581 -2.0862 -1.1222 19 7 7.8785 -2.3662 -2.0721 20 6 8.1297 -2.3514 -3.4181 21 1 9.1365 -2.1981 -3.7778 22 6 7.0905 -2.5333 -4.3202 23 7 5.8510 -2.6239 -3.8867 24 14 7.4511 -2.6497 -6.1493 25 1 7.4046 -1.2925 -6.7503 26 1 8.8010 -3.2346 -6.3515 27 1 6.4344 -3.5144 -6.8002 28 6 3.5317 -0.7570 0.0039 29 7 2.2829 -1.1354 0.0059 30 1 -0.3633 0.0056 1.0276 31 1 -0.3632 0.8871 -0.5188 32 1 -0.3633 -0.8928 -0.5089 33 1 1.9185 2.1186 -0.0004 34 1 7.8980 2.4248 -0.1410 35 1 7.6124 0.6599 2.0721 36 1 9.0829 0.7801 1.0599 37 1 8.3432 -1.4028 3.0845 38 1 9.8972 -0.5205 2.9110 39 1 9.6111 -2.9802 1.7748 40 1 10.4595 -1.6795 0.8761 41 1 9.6847 -2.8983 -1.1481 42 1 9.4483 -1.1514 -1.3946 43 1 6.9857 -2.5621 -1.7474 44 1 5.6706 -2.6407 -2.9338 45 1 4.3922 -1.4096 0.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324200759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:03 Heat of formation + Delta-G solvation = 118.710407 kcal Electronic energy + Delta-G solvation = -31362.853412 eV Core-core repulsion = 27192.925437 eV Total energy + Delta-G solvation = -4169.927975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.90893 -42.25996 -41.12591 -38.45461 -36.54476 -35.09576 -34.72722 -33.41957 -33.15895 -32.45640 -30.56514 -30.10038 -27.79459 -26.56586 -26.04339 -24.57272 -24.10529 -23.23824 -22.32570 -21.85110 -21.48261 -20.16467 -19.36999 -18.90157 -18.73653 -18.20926 -17.60410 -17.10948 -16.88258 -16.49597 -16.01681 -15.77620 -15.46046 -15.28648 -15.18285 -14.87849 -14.62455 -14.47335 -14.11175 -13.97166 -13.76221 -13.69857 -13.50115 -13.26717 -12.89815 -12.68467 -12.56822 -12.51601 -12.16150 -12.13346 -11.87898 -11.85953 -11.60858 -11.55477 -11.33213 -11.17784 -10.84958 -10.79231 -10.60221 -9.58525 -9.16655 -8.86830 -8.22602 -5.13406 -0.26719 0.81270 0.86138 1.36448 1.51647 1.64867 1.67488 1.76903 1.78953 1.98103 2.16994 2.75578 3.16521 3.20188 3.51565 3.56609 3.65179 3.70880 3.82711 3.84899 3.97849 4.00960 4.19880 4.24382 4.32089 4.34249 4.41818 4.43614 4.59390 4.63244 4.64501 4.70624 4.74651 4.79595 4.81798 4.87225 4.98092 5.11617 5.13891 5.29323 5.37132 5.52780 5.65149 5.87717 6.45826 6.56219 6.71445 7.07116 7.15941 7.47677 8.28098 8.39852 9.30785 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007587 B = 0.004986 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3689.459665 B = 5614.751474 C = 7598.466733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.358 5.358 3 C 0.128 3.872 4 C -0.229 4.229 5 C 0.133 3.867 6 O 0.104 5.896 7 N -0.378 5.378 8 C 0.047 3.953 9 C -0.273 4.273 10 C 0.595 3.405 11 O -0.525 6.525 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.116 4.116 15 C -0.113 4.113 16 C 0.132 3.868 17 H 0.052 0.948 18 C 0.149 3.851 19 N -0.748 5.748 20 C -0.339 4.339 21 H 0.053 0.947 22 C -0.104 4.104 23 N -0.971 5.971 24 Si 1.127 2.873 25 H -0.291 1.291 26 H -0.273 1.273 27 H -0.293 1.293 28 C 0.094 3.906 29 N -0.330 5.330 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.217 0.783 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.023 0.977 42 H 0.011 0.989 43 H 0.375 0.625 44 H 0.255 0.745 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 11.589 18.707 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.135 5.135 3 C -0.025 4.025 4 C -0.242 4.242 5 C 0.066 3.934 6 O 0.045 5.955 7 N -0.086 5.086 8 C -0.132 4.132 9 C -0.281 4.281 10 C 0.383 3.617 11 O -0.401 6.401 12 N -0.342 5.342 13 C -0.029 4.029 14 C -0.154 4.154 15 C -0.151 4.151 16 C 0.029 3.971 17 H 0.070 0.930 18 C 0.021 3.979 19 N -0.399 5.399 20 C -0.471 4.471 21 H 0.071 0.929 22 C -0.297 4.297 23 N -0.618 5.618 24 Si 0.953 3.047 25 H -0.219 1.219 26 H -0.198 1.198 27 H -0.219 1.219 28 C -0.093 4.093 29 N -0.151 5.151 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.255 0.745 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.214 0.786 44 H 0.066 0.934 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.245 11.415 16.815 20.989 hybrid contribution 1.309 -0.361 0.908 1.634 sum -3.936 11.053 17.723 21.255 Atomic orbital electron populations 1.22476 0.70332 1.06697 1.05800 1.48858 1.08861 1.03000 1.52814 1.23705 0.88488 0.95537 0.94756 1.17950 0.90062 0.91151 1.25068 1.22008 0.92889 0.83169 0.95316 1.84761 1.24226 1.18887 1.67582 1.73431 0.89809 1.23559 1.21783 1.25131 1.02375 0.86211 0.99484 1.21164 0.93174 0.95510 1.18244 1.16733 0.79939 0.85407 0.79665 1.90814 1.58083 1.54814 1.36373 1.48347 1.29345 1.18744 1.37726 1.22621 0.96883 0.95239 0.88161 1.22770 1.01427 0.94883 0.96295 1.22632 0.96130 1.01974 0.94396 1.21874 0.94500 0.85514 0.95261 0.93028 1.21138 0.91055 0.96655 0.89015 1.42990 1.09413 1.85308 1.02207 1.20305 0.94947 1.46088 0.85722 0.92925 1.27079 0.92531 1.01106 1.08975 1.70744 1.19714 1.55128 1.16254 0.82667 0.75049 0.76376 0.70641 1.21871 1.19783 1.21904 1.24198 0.95195 0.94277 0.95611 1.77259 1.01872 1.09513 1.26430 0.87849 0.85402 0.89301 0.74468 0.76605 0.90101 0.90142 0.90186 0.86370 0.88326 0.89307 0.95896 0.97066 0.78636 0.93368 0.81189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.44 127.77 1.46 2.49 16 2 N -0.36 -8.66 3.99 -367.60 -1.47 -10.13 16 3 C 0.13 2.86 11.51 84.25 0.97 3.83 16 4 C -0.23 -7.33 6.12 -20.16 -0.12 -7.45 16 5 C 0.13 4.28 7.45 25.08 0.19 4.47 16 6 O 0.10 2.94 11.17 69.83 0.78 3.72 16 7 N -0.38 -10.91 11.97 -56.82 -0.68 -11.59 16 8 C 0.05 1.35 11.08 86.04 0.95 2.31 16 9 C -0.27 -9.47 5.45 -19.54 -0.11 -9.58 16 10 C 0.59 24.10 6.69 86.51 0.58 24.68 16 11 O -0.52 -27.04 10.06 -4.25 -0.04 -27.08 16 12 N -0.61 -19.87 3.07 -792.47 -2.43 -22.30 16 13 C 0.09 1.94 5.85 86.85 0.51 2.45 16 14 C -0.12 -1.78 7.08 31.98 0.23 -1.56 16 15 C -0.11 -2.35 6.45 31.78 0.20 -2.15 16 16 C 0.13 4.47 3.03 45.34 0.14 4.61 16 17 H 0.05 1.97 8.12 -2.38 -0.02 1.95 16 18 C 0.15 6.58 5.62 86.38 0.49 7.06 16 19 N -0.75 -42.96 4.37 -343.45 -1.50 -44.46 16 20 C -0.34 -21.42 9.99 84.03 0.84 -20.58 16 21 H 0.05 3.25 7.83 -2.91 -0.02 3.23 16 22 C -0.10 -6.75 5.50 84.86 0.47 -6.28 16 23 N -0.97 -68.02 13.69 21.65 0.30 -67.72 16 24 Si 1.13 57.90 29.92 68.60 2.05 59.95 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 28 C 0.09 3.61 10.86 85.65 0.93 4.54 16 29 N -0.33 -11.74 12.50 -56.25 -0.70 -12.44 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.24 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.22 4.84 7.87 -2.91 -0.02 4.82 16 35 H 0.08 1.57 7.68 -2.39 -0.02 1.55 16 36 H 0.08 1.46 7.98 -2.39 -0.02 1.44 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 1.71 7.85 -2.39 -0.02 1.70 16 41 H 0.02 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.37 22.91 4.01 -92.71 -0.37 22.54 16 44 H 0.26 18.29 6.13 -92.71 -0.57 17.72 16 45 H 0.17 7.54 5.30 -2.91 -0.02 7.53 16 Total: -1.00 -95.19 372.12 4.90 -90.30 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.86 Total: 32.93 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 7.72 Total: 8.82 kcal Atomic # 7 Polarization: -162.16 SS G_CDS: -6.48 Total: -168.64 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.74 Total: -23.36 kcal Atomic # 14 Polarization: 57.90 SS G_CDS: 2.05 Total: 59.95 kcal Total: -95.19 4.90 -90.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324200759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.009 kcal (2) G-P(sol) polarization free energy of solvation -95.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds