Wall clock time and date at job start Wed Apr 1 2020 04:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00047 * 2 1 4 4 H 1.07997 * 119.99594 * 149.39446 * 3 2 1 5 5 C 1.38810 * 120.00059 * 329.67461 * 3 2 1 6 6 N 1.31621 * 120.00093 * 3.23477 * 5 3 2 7 7 Si 1.86804 * 119.99929 * 183.23516 * 5 3 2 8 8 H 1.48495 * 109.47140 * 89.99926 * 7 5 3 9 9 H 1.48502 * 109.47153 * 209.99864 * 7 5 3 10 10 H 1.48502 * 109.46825 * 330.00039 * 7 5 3 11 11 C 1.46502 * 119.99457 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46829 * 279.24082 * 11 2 1 13 13 H 1.09002 * 109.87297 * 65.16878 * 12 11 2 14 14 C 1.54328 * 109.87957 * 186.18151 * 12 11 2 15 15 C 1.55165 * 102.93927 * 141.61020 * 14 12 11 16 16 C 1.54903 * 101.58404 * 324.49926 * 15 14 12 17 17 N 1.47020 * 109.88805 * 303.99037 * 12 11 2 18 18 C 1.34776 * 125.64517 * 61.62168 * 17 12 11 19 19 O 1.21646 * 120.00445 * 5.40737 * 18 17 12 20 20 C 1.47058 * 119.99888 * 185.41571 * 18 17 12 21 21 C 1.35882 * 125.42904 * 186.09159 * 20 18 17 22 22 C 1.41582 * 107.74136 * 180.02562 * 21 20 18 23 23 C 1.40120 * 133.35031 * 180.02562 * 22 21 20 24 24 C 1.36617 * 119.80963 * 179.97438 * 23 22 21 25 25 F 1.35108 * 119.71485 * 180.02562 * 24 23 22 26 26 C 1.39119 * 120.56634 * 0.02562 * 24 23 22 27 27 C 1.37668 * 120.62640 * 359.97438 * 26 24 23 28 28 C 1.39214 * 119.83956 * 359.97438 * 27 26 24 29 29 N 1.37571 * 133.15168 * 180.36053 * 28 27 26 30 30 H 0.97002 * 125.61040 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47090 * 94.48286 * 1 2 3 32 32 H 1.08996 * 109.47588 * 214.48484 * 1 2 3 33 33 H 1.09003 * 109.47340 * 334.48431 * 1 2 3 34 34 H 0.97000 * 119.99736 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.47561 * 39.24186 * 11 2 1 36 36 H 1.08999 * 109.46737 * 159.24886 * 11 2 1 37 37 H 1.08993 * 110.71923 * 259.97157 * 14 12 11 38 38 H 1.08996 * 110.71923 * 23.07488 * 14 12 11 39 39 H 1.09007 * 110.99940 * 82.57786 * 15 14 12 40 40 H 1.09002 * 111.00160 * 206.42111 * 15 14 12 41 41 H 1.09001 * 110.36565 * 155.84511 * 16 15 14 42 42 H 1.08998 * 110.36671 * 278.17300 * 16 15 14 43 43 H 1.07997 * 126.13023 * 359.97438 * 21 20 18 44 44 H 1.08001 * 120.09607 * 359.97438 * 23 22 21 45 45 H 1.08005 * 119.69135 * 179.97438 * 26 24 23 46 46 H 1.08000 * 120.07776 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1168 1.2509 0.4762 5 6 1.5981 2.3058 -0.6070 6 7 0.3903 2.2450 -1.1265 7 14 2.5700 3.8991 -0.6864 8 1 3.3750 3.9262 -1.9339 9 1 1.6333 5.0513 -0.6766 10 1 3.4744 3.9863 0.4883 11 6 2.1974 -1.2688 0.0006 12 6 2.2517 -1.8256 1.4246 13 1 1.2467 -2.0795 1.7618 14 6 3.1509 -3.0793 1.4640 15 6 3.8941 -2.9314 2.8180 16 6 4.0837 -1.3963 2.9028 17 7 2.8492 -0.8314 2.3279 18 6 2.3512 0.3939 2.5871 19 8 1.2716 0.7206 2.1315 20 6 3.1130 1.3360 3.4207 21 6 2.6688 2.5472 3.8473 22 6 3.6988 3.1370 4.6191 23 6 3.8116 4.3554 5.3020 24 6 4.9620 4.6518 5.9767 25 9 5.0684 5.8269 6.6349 26 6 6.0247 3.7542 5.9916 27 6 5.9362 2.5514 5.3277 28 6 4.7735 2.2269 4.6343 29 7 4.3918 1.1282 3.8996 30 1 4.9329 0.3388 3.7413 31 1 -0.3633 -0.0803 -1.0245 32 1 -0.3634 -0.8470 0.5818 33 1 -0.3634 0.9274 0.4427 34 1 0.0051 3.0275 -1.5510 35 1 1.6898 -1.9817 -0.6492 36 1 3.2113 -1.1032 -0.3636 37 1 2.5477 -3.9870 1.4523 38 1 3.8551 -3.0750 0.6320 39 1 3.2806 -3.2955 3.6422 40 1 4.8562 -3.4432 2.7935 41 1 4.1957 -1.0847 3.9413 42 1 4.9502 -1.0882 2.3177 43 1 1.7034 2.9823 3.6351 44 1 2.9914 5.0580 5.2951 45 1 6.9278 4.0032 6.5292 46 1 6.7665 1.8610 5.3455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328753823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:57 Heat of formation + Delta-G solvation = 50.412478 kcal Electronic energy + Delta-G solvation = -31651.841094 eV Core-core repulsion = 27459.031537 eV Total energy + Delta-G solvation = -4192.809557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.73630 -41.47872 -39.52523 -36.97625 -36.36591 -34.96216 -32.29201 -31.54340 -31.24565 -29.38451 -28.88300 -28.69950 -25.74297 -25.22596 -24.29972 -22.79475 -21.88372 -21.28312 -20.87057 -20.19565 -19.01992 -17.48018 -17.38193 -16.92062 -16.72667 -15.98124 -15.55978 -15.51415 -14.89671 -14.80849 -14.46994 -14.10015 -13.85363 -13.66346 -13.53657 -13.18491 -13.06890 -13.02320 -12.92061 -12.80532 -12.44698 -12.12268 -12.04422 -11.61554 -11.28301 -11.23967 -11.12636 -10.92803 -10.77270 -10.74304 -10.57410 -10.37984 -9.96091 -9.87575 -9.80556 -9.71200 -9.10731 -8.47213 -8.05310 -7.95052 -7.68237 -6.25378 -5.57598 -3.01141 0.82284 1.44514 2.42473 3.01891 3.42958 3.45542 3.52302 3.54190 3.73526 4.08219 4.35181 4.52498 4.58368 4.61510 4.71222 4.89043 4.91704 5.03654 5.22803 5.29320 5.33256 5.35068 5.49662 5.51015 5.63842 5.70578 5.73493 5.84527 5.93065 5.96838 6.06475 6.13681 6.15329 6.17981 6.26969 6.29168 6.48501 6.64813 6.79921 6.81659 6.97701 7.11007 7.11307 7.46618 7.71806 7.86121 8.08894 8.14588 8.64798 9.03936 9.44150 10.05838 10.58174 11.47929 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.004763 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.320542 B = 5876.844411 C = 7898.724460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.585 5.585 3 C -0.214 4.214 4 H 0.050 0.950 5 C 0.011 3.989 6 N -0.902 5.902 7 Si 0.888 3.112 8 H -0.291 1.291 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.141 3.859 12 C 0.117 3.883 13 H 0.065 0.935 14 C -0.126 4.126 15 C -0.128 4.128 16 C 0.088 3.912 17 N -0.613 5.613 18 C 0.570 3.430 19 O -0.416 6.416 20 C 0.066 3.934 21 C -0.129 4.129 22 C -0.085 4.085 23 C -0.100 4.100 24 C 0.064 3.936 25 F -0.147 7.147 26 C -0.134 4.134 27 C -0.098 4.098 28 C 0.088 3.912 29 N -0.582 5.582 30 H 0.418 0.582 31 H 0.002 0.998 32 H -0.021 1.021 33 H 0.068 0.932 34 H 0.249 0.751 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.157 0.843 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.819 -7.634 13.090 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.306 5.306 3 C -0.344 4.344 4 H 0.068 0.932 5 C -0.187 4.187 6 N -0.547 5.547 7 Si 0.718 3.282 8 H -0.218 1.218 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.012 3.988 12 C 0.011 3.989 13 H 0.083 0.917 14 C -0.165 4.165 15 C -0.166 4.166 16 C -0.036 4.036 17 N -0.352 5.352 18 C 0.355 3.645 19 O -0.282 6.282 20 C -0.045 4.045 21 C -0.155 4.155 22 C -0.090 4.090 23 C -0.120 4.120 24 C 0.044 3.956 25 F -0.126 7.126 26 C -0.154 4.154 27 C -0.119 4.119 28 C -0.022 4.022 29 N -0.191 5.191 30 H 0.261 0.739 31 H 0.020 0.980 32 H -0.003 1.003 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.175 0.825 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.022 -7.287 12.689 17.736 hybrid contribution 1.054 0.861 -0.075 1.363 sum 11.077 -6.427 12.614 17.975 Atomic orbital electron populations 1.20604 0.82433 0.97575 0.95484 1.43655 1.01849 0.99714 1.85414 1.18771 1.00511 0.87806 1.27276 0.93195 1.25042 0.96767 0.98337 0.98546 1.70032 1.14407 1.28622 1.41633 0.86492 0.79680 0.84278 0.77761 1.21837 1.21660 1.20392 1.21088 0.96537 0.89576 0.91608 1.22498 0.95827 0.86523 0.94047 0.91695 1.22667 0.98945 0.97786 0.97109 1.22696 1.01027 0.94348 0.98521 1.22375 0.89203 0.94689 0.97362 1.48058 1.25062 1.15003 1.47066 1.16369 0.86671 0.79745 0.81715 1.91032 1.19297 1.73667 1.44206 1.20725 0.84890 0.97850 1.00986 1.20825 1.00290 0.93517 1.00824 1.17931 0.94811 0.94483 1.01776 1.20294 0.97385 0.96659 0.97636 1.16970 0.95971 0.83475 0.99207 1.91467 1.96625 1.45248 1.79256 1.20700 0.98561 0.93761 1.02352 1.19817 0.95556 0.97379 0.99154 1.18375 0.96221 0.89030 0.98602 1.42767 1.14551 1.17239 1.44591 0.73904 0.98001 1.00251 0.91316 0.94032 0.94411 0.93276 0.90567 0.90594 0.90782 0.90323 0.91710 0.92076 0.82538 0.84662 0.84689 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.79 7.56 59.85 0.45 5.24 16 2 N -0.58 -14.70 1.69 -181.12 -0.31 -15.00 16 3 C -0.21 -5.84 6.16 -15.06 -0.09 -5.94 16 4 H 0.05 1.38 6.77 -52.49 -0.36 1.03 16 5 C 0.01 0.32 5.32 -17.43 -0.09 0.23 16 6 N -0.90 -27.12 10.48 55.49 0.58 -26.54 16 7 Si 0.89 22.88 29.56 -169.99 -5.02 17.86 16 8 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 9 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.14 2.82 5.32 -4.04 -0.02 2.80 16 12 C 0.12 1.91 3.29 -66.95 -0.22 1.69 16 13 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 14 C -0.13 -1.42 6.48 -24.89 -0.16 -1.58 16 15 C -0.13 -1.18 7.08 -24.58 -0.17 -1.36 16 16 C 0.09 1.01 5.23 -2.53 -0.01 1.00 16 17 N -0.61 -10.16 3.06 -164.41 -0.50 -10.66 16 18 C 0.57 11.41 5.28 -12.68 -0.07 11.34 16 19 O -0.42 -10.12 10.91 5.24 0.06 -10.06 16 20 C 0.07 1.18 6.76 -82.30 -0.56 0.62 16 21 C -0.13 -2.36 10.54 -39.15 -0.41 -2.77 16 22 C -0.08 -1.37 6.16 -106.93 -0.66 -2.03 16 23 C -0.10 -1.47 10.03 -39.46 -0.40 -1.86 16 24 C 0.06 0.87 7.24 -39.84 -0.29 0.58 16 25 F -0.15 -2.01 17.25 2.25 0.04 -1.97 16 26 C -0.13 -1.54 9.99 -39.46 -0.39 -1.93 16 27 C -0.10 -1.13 10.07 -39.43 -0.40 -1.53 16 28 C 0.09 1.26 7.25 -83.94 -0.61 0.65 16 29 N -0.58 -8.29 5.45 -7.34 -0.04 -8.33 16 30 H 0.42 4.73 5.19 -40.82 -0.21 4.52 16 31 H 0.00 0.05 7.83 -51.93 -0.41 -0.36 16 32 H -0.02 -0.50 7.90 -51.93 -0.41 -0.91 16 33 H 0.07 2.01 6.15 -51.93 -0.32 1.69 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 36 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.66 6.11 -51.93 -0.32 0.34 16 42 H 0.06 0.66 7.86 -51.93 -0.41 0.26 16 43 H 0.16 2.93 8.06 -52.49 -0.42 2.51 16 44 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 46 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -33.51 364.01 -9.98 -43.49 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.17 Total: 0.59 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -4.10 Total: 5.15 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.27 Total: -60.54 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.51 -9.98 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328753823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.905 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds