Wall clock time and date at job start Wed Apr 1 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00047 * 2 1 4 4 H 1.07997 * 119.99594 * 149.39446 * 3 2 1 5 5 C 1.38810 * 120.00059 * 329.67461 * 3 2 1 6 6 N 1.31621 * 120.00093 * 3.23477 * 5 3 2 7 7 Si 1.86804 * 119.99929 * 183.23516 * 5 3 2 8 8 H 1.48495 * 109.47140 * 89.99926 * 7 5 3 9 9 H 1.48502 * 109.47153 * 209.99864 * 7 5 3 10 10 H 1.48502 * 109.46825 * 330.00039 * 7 5 3 11 11 C 1.46502 * 119.99457 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46829 * 279.24082 * 11 2 1 13 13 H 1.09002 * 109.87297 * 65.16878 * 12 11 2 14 14 C 1.54328 * 109.87957 * 186.18151 * 12 11 2 15 15 C 1.55165 * 102.93927 * 141.61020 * 14 12 11 16 16 C 1.54903 * 101.58404 * 324.49926 * 15 14 12 17 17 N 1.47020 * 109.88805 * 303.99037 * 12 11 2 18 18 C 1.34776 * 125.64517 * 61.62168 * 17 12 11 19 19 O 1.21646 * 120.00445 * 5.40737 * 18 17 12 20 20 C 1.47058 * 119.99888 * 185.41571 * 18 17 12 21 21 C 1.35882 * 125.42904 * 186.09159 * 20 18 17 22 22 C 1.41582 * 107.74136 * 180.02562 * 21 20 18 23 23 C 1.40120 * 133.35031 * 180.02562 * 22 21 20 24 24 C 1.36617 * 119.80963 * 179.97438 * 23 22 21 25 25 F 1.35108 * 119.71485 * 180.02562 * 24 23 22 26 26 C 1.39119 * 120.56634 * 0.02562 * 24 23 22 27 27 C 1.37668 * 120.62640 * 359.97438 * 26 24 23 28 28 C 1.39214 * 119.83956 * 359.97438 * 27 26 24 29 29 N 1.37571 * 133.15168 * 180.36053 * 28 27 26 30 30 H 0.97002 * 125.61040 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47090 * 94.48286 * 1 2 3 32 32 H 1.08996 * 109.47588 * 214.48484 * 1 2 3 33 33 H 1.09003 * 109.47340 * 334.48431 * 1 2 3 34 34 H 0.97000 * 119.99736 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.47561 * 39.24186 * 11 2 1 36 36 H 1.08999 * 109.46737 * 159.24886 * 11 2 1 37 37 H 1.08993 * 110.71923 * 259.97157 * 14 12 11 38 38 H 1.08996 * 110.71923 * 23.07488 * 14 12 11 39 39 H 1.09007 * 110.99940 * 82.57786 * 15 14 12 40 40 H 1.09002 * 111.00160 * 206.42111 * 15 14 12 41 41 H 1.09001 * 110.36565 * 155.84511 * 16 15 14 42 42 H 1.08998 * 110.36671 * 278.17300 * 16 15 14 43 43 H 1.07997 * 126.13023 * 359.97438 * 21 20 18 44 44 H 1.08001 * 120.09607 * 359.97438 * 23 22 21 45 45 H 1.08005 * 119.69135 * 179.97438 * 26 24 23 46 46 H 1.08000 * 120.07776 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1168 1.2509 0.4762 5 6 1.5981 2.3058 -0.6070 6 7 0.3903 2.2450 -1.1265 7 14 2.5700 3.8991 -0.6864 8 1 3.3750 3.9262 -1.9339 9 1 1.6333 5.0513 -0.6766 10 1 3.4744 3.9863 0.4883 11 6 2.1974 -1.2688 0.0006 12 6 2.2517 -1.8256 1.4246 13 1 1.2467 -2.0795 1.7618 14 6 3.1509 -3.0793 1.4640 15 6 3.8941 -2.9314 2.8180 16 6 4.0837 -1.3963 2.9028 17 7 2.8492 -0.8314 2.3279 18 6 2.3512 0.3939 2.5871 19 8 1.2716 0.7206 2.1315 20 6 3.1130 1.3360 3.4207 21 6 2.6688 2.5472 3.8473 22 6 3.6988 3.1370 4.6191 23 6 3.8116 4.3554 5.3020 24 6 4.9620 4.6518 5.9767 25 9 5.0684 5.8269 6.6349 26 6 6.0247 3.7542 5.9916 27 6 5.9362 2.5514 5.3277 28 6 4.7735 2.2269 4.6343 29 7 4.3918 1.1282 3.8996 30 1 4.9329 0.3388 3.7413 31 1 -0.3633 -0.0803 -1.0245 32 1 -0.3634 -0.8470 0.5818 33 1 -0.3634 0.9274 0.4427 34 1 0.0051 3.0275 -1.5510 35 1 1.6898 -1.9817 -0.6492 36 1 3.2113 -1.1032 -0.3636 37 1 2.5477 -3.9870 1.4523 38 1 3.8551 -3.0750 0.6320 39 1 3.2806 -3.2955 3.6422 40 1 4.8562 -3.4432 2.7935 41 1 4.1957 -1.0847 3.9413 42 1 4.9502 -1.0882 2.3177 43 1 1.7034 2.9823 3.6351 44 1 2.9914 5.0580 5.2951 45 1 6.9278 4.0032 6.5292 46 1 6.7665 1.8610 5.3455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328753823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:56 Heat of formation + Delta-G solvation = 30.482628 kcal Electronic energy + Delta-G solvation = -31652.705318 eV Core-core repulsion = 27459.031537 eV Total energy + Delta-G solvation = -4193.673781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.81021 -42.68908 -40.84781 -38.27354 -37.62222 -36.81433 -33.53998 -33.27322 -32.50006 -30.80178 -30.09091 -29.89296 -27.87067 -26.69752 -25.61578 -24.05398 -23.06465 -22.64451 -22.11715 -21.52588 -20.35698 -18.85878 -18.67735 -18.50443 -17.84556 -17.30756 -16.88665 -16.74991 -16.58821 -16.18998 -15.70428 -15.51992 -15.24896 -14.97739 -14.85920 -14.77843 -14.37117 -14.22780 -14.11675 -13.92538 -13.68675 -13.53952 -13.43926 -13.26301 -13.02395 -12.79410 -12.41251 -12.33019 -12.26991 -12.08844 -11.96772 -11.93069 -11.76576 -11.67403 -11.51784 -11.01803 -10.70797 -10.49527 -9.57386 -9.18895 -8.86445 -8.24501 -7.71751 -5.17086 -0.31438 0.36432 1.13431 1.35405 1.39241 1.45048 1.80632 2.18677 2.51896 2.58355 2.69288 3.28460 3.45918 3.54304 3.60774 3.66252 3.84300 3.95934 4.04205 4.11068 4.13687 4.25344 4.30749 4.34311 4.46301 4.50070 4.63952 4.71765 4.84641 4.85808 4.96002 4.96857 5.01617 5.02582 5.15934 5.16575 5.19144 5.22413 5.41550 5.45852 5.52119 5.55202 5.65067 5.70832 5.91663 5.95723 6.40616 6.49394 6.76733 7.30109 7.54926 8.01981 8.49362 9.33049 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.004763 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.320542 B = 5876.844411 C = 7898.724460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.209 3.791 2 N -0.598 5.598 3 C -0.186 4.186 4 H 0.047 0.953 5 C -0.051 4.051 6 N -0.940 5.940 7 Si 0.940 3.060 8 H -0.285 1.285 9 H -0.300 1.300 10 H -0.278 1.278 11 C 0.137 3.863 12 C 0.118 3.882 13 H 0.045 0.955 14 C -0.115 4.115 15 C -0.113 4.113 16 C 0.076 3.924 17 N -0.615 5.615 18 C 0.569 3.431 19 O -0.482 6.482 20 C 0.048 3.952 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.120 4.120 24 C 0.062 3.938 25 F -0.148 7.148 26 C -0.120 4.120 27 C -0.084 4.084 28 C 0.089 3.911 29 N -0.562 5.562 30 H 0.433 0.567 31 H -0.022 1.022 32 H -0.004 1.004 33 H 0.030 0.970 34 H 0.239 0.761 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.174 0.826 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.688 -10.026 15.313 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.320 5.320 3 C -0.317 4.317 4 H 0.064 0.936 5 C -0.245 4.245 6 N -0.589 5.589 7 Si 0.770 3.230 8 H -0.213 1.213 9 H -0.227 1.227 10 H -0.204 1.204 11 C 0.010 3.990 12 C 0.012 3.988 13 H 0.063 0.937 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.046 4.046 17 N -0.352 5.352 18 C 0.356 3.644 19 O -0.352 6.352 20 C -0.063 4.063 21 C -0.179 4.179 22 C -0.117 4.117 23 C -0.140 4.140 24 C 0.042 3.958 25 F -0.127 7.127 26 C -0.140 4.140 27 C -0.104 4.104 28 C -0.022 4.022 29 N -0.173 5.173 30 H 0.279 0.721 31 H -0.004 1.004 32 H 0.014 0.986 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.191 0.809 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.995 -9.766 14.943 23.314 hybrid contribution -0.355 1.554 -0.529 1.680 sum 14.640 -8.211 14.414 22.125 Atomic orbital electron populations 1.20130 0.83669 0.96149 0.93670 1.43789 1.01476 1.01121 1.85592 1.18804 0.99698 0.88645 1.24586 0.93563 1.25607 0.97734 1.01015 1.00106 1.70188 1.15860 1.28606 1.44272 0.85650 0.78301 0.81433 0.77597 1.21255 1.22726 1.20369 1.21358 0.95823 0.87448 0.94360 1.22350 0.96725 0.88531 0.91154 0.93706 1.22644 0.98469 0.95311 0.98963 1.22721 1.02763 0.92380 0.97170 1.22774 0.87168 0.96430 0.98234 1.48182 1.26510 1.13974 1.46485 1.16798 0.86094 0.80753 0.80802 1.91019 1.21818 1.75270 1.47131 1.20363 0.86595 0.97492 1.01869 1.20822 1.00288 0.94570 1.02172 1.18000 0.95134 0.95843 1.02756 1.20381 0.98436 0.96569 0.98572 1.17199 0.96183 0.83799 0.98661 1.91468 1.96601 1.45480 1.79176 1.21160 0.98817 0.92772 1.01272 1.20303 0.95272 0.97828 0.96990 1.18708 0.96659 0.88261 0.98554 1.42560 1.13137 1.17808 1.43806 0.72068 1.00387 0.98603 0.95163 0.95089 0.93470 0.93125 0.88523 0.89479 0.90187 0.86470 0.90051 0.90496 0.85120 0.84879 0.80906 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 11.57 7.56 127.77 0.97 12.53 16 2 N -0.60 -31.06 1.69 -726.94 -1.23 -32.28 16 3 C -0.19 -10.54 6.16 84.03 0.52 -10.02 16 4 H 0.05 2.62 6.77 -2.91 -0.02 2.60 16 5 C -0.05 -3.09 5.32 84.86 0.45 -2.64 16 6 N -0.94 -60.09 10.48 21.65 0.23 -59.87 16 7 Si 0.94 49.33 29.56 68.60 2.03 51.36 16 8 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 9 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 10 H -0.28 -14.33 7.11 99.48 0.71 -13.63 16 11 C 0.14 5.43 5.32 86.38 0.46 5.89 16 12 C 0.12 3.68 3.29 45.34 0.15 3.83 16 13 H 0.04 1.59 7.94 -2.39 -0.02 1.57 16 14 C -0.12 -2.11 6.48 31.79 0.21 -1.90 16 15 C -0.11 -1.49 7.08 31.99 0.23 -1.26 16 16 C 0.08 1.45 5.23 86.85 0.45 1.91 16 17 N -0.61 -19.61 3.06 -792.30 -2.43 -22.04 16 18 C 0.57 23.34 5.28 86.56 0.46 23.80 16 19 O -0.48 -24.91 10.91 -4.18 -0.05 -24.95 16 20 C 0.05 1.75 6.76 39.92 0.27 2.02 16 21 C -0.15 -5.89 10.54 22.55 0.24 -5.65 16 22 C -0.11 -3.66 6.16 -21.36 -0.13 -3.79 16 23 C -0.12 -3.51 10.03 22.35 0.22 -3.28 16 24 C 0.06 1.53 7.24 22.10 0.16 1.69 16 25 F -0.15 -3.76 17.25 44.97 0.78 -2.98 16 26 C -0.12 -2.21 9.99 22.35 0.22 -1.99 16 27 C -0.08 -1.50 10.07 22.37 0.23 -1.27 16 28 C 0.09 2.31 7.25 39.11 0.28 2.59 16 29 N -0.56 -14.75 5.45 -177.14 -0.96 -15.72 16 30 H 0.43 8.13 5.19 -92.71 -0.48 7.65 16 31 H -0.02 -1.30 7.83 -2.39 -0.02 -1.32 16 32 H 0.00 -0.22 7.90 -2.39 -0.02 -0.24 16 33 H 0.03 1.88 6.15 -2.39 -0.01 1.87 16 34 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 36 H 0.05 1.97 7.87 -2.39 -0.02 1.95 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.46 7.78 -2.39 -0.02 1.45 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.31 6.11 -2.39 -0.01 1.29 16 42 H 0.08 1.29 7.86 -2.39 -0.02 1.28 16 43 H 0.13 5.54 8.06 -2.91 -0.02 5.52 16 44 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 45 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 46 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -81.02 364.01 4.28 -76.74 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.54 Total: 7.27 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 5.38 Total: 22.46 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -4.39 Total: -129.90 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -81.02 4.28 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328753823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.226 kcal (2) G-P(sol) polarization free energy of solvation -81.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds