Wall clock time and date at job start Wed Apr 1 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34453 * 125.77215 * 2 1 4 4 C 1.38066 * 107.39340 * 179.97438 * 3 2 1 5 5 C 1.47355 * 126.41256 * 180.02562 * 4 3 2 6 6 O 1.34256 * 127.19556 * 312.20357 * 5 4 3 7 7 N 1.20735 * 111.95509 * 179.97438 * 6 5 4 8 8 C 1.29881 * 112.81148 * 0.02562 * 7 6 5 9 9 C 1.39933 * 127.19627 * 131.89476 * 5 4 3 10 10 C 1.46913 * 128.39843 * 359.97438 * 9 5 4 11 11 O 1.21673 * 119.99769 * 354.42033 * 10 9 5 12 12 N 1.34775 * 119.99952 * 174.41684 * 10 9 5 13 13 C 1.46499 * 119.99913 * 179.97438 * 12 10 9 14 14 C 1.53780 * 113.61715 * 254.14019 * 13 12 10 15 15 C 1.53953 * 87.02064 * 220.04545 * 14 13 12 16 16 C 1.53004 * 113.66431 * 139.92917 * 15 14 13 17 17 N 1.46497 * 109.47187 * 87.44680 * 16 15 14 18 18 C 1.36939 * 120.00264 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99488 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00352 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99670 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47136 * 90.00034 * 22 20 18 24 24 H 1.48505 * 109.47051 * 209.99649 * 22 20 18 25 25 H 1.48494 * 109.47379 * 329.99927 * 22 20 18 26 26 C 1.53781 * 113.61617 * 156.53028 * 13 12 10 27 27 C 1.41309 * 107.18034 * 359.97438 * 4 3 2 28 28 N 1.30482 * 108.05130 * 0.02562 * 27 4 3 29 29 H 1.08993 * 109.47014 * 89.99658 * 1 2 3 30 30 H 1.09000 * 109.47458 * 210.00596 * 1 2 3 31 31 H 1.09002 * 109.46747 * 330.00078 * 1 2 3 32 32 H 1.08000 * 126.30229 * 359.97438 * 3 2 1 33 33 H 1.07996 * 126.78483 * 180.02562 * 8 7 6 34 34 H 0.96998 * 120.00457 * 0.02562 * 12 10 9 35 35 H 1.09001 * 112.85024 * 25.33909 * 13 12 10 36 36 H 1.08995 * 113.61336 * 334.56669 * 14 13 12 37 37 H 1.08996 * 113.61581 * 105.47004 * 14 13 12 38 38 H 1.08998 * 113.61810 * 270.80146 * 15 14 13 39 39 H 1.09007 * 109.47089 * 207.44403 * 16 15 14 40 40 H 1.08997 * 109.47140 * 327.43933 * 16 15 14 41 41 H 0.96999 * 119.99909 * 359.97438 * 17 16 15 42 42 H 0.96998 * 120.00127 * 180.02562 * 21 20 18 43 43 H 1.09006 * 113.61765 * 254.53209 * 26 13 12 44 44 H 1.09002 * 113.61523 * 25.43460 * 26 13 12 45 45 H 1.07993 * 125.97542 * 179.73648 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.0909 0.0000 4 6 3.5612 0.6556 0.0006 5 6 4.7652 1.5051 0.0013 6 8 5.0145 2.5602 -0.7906 7 7 6.0889 3.0579 -0.5545 8 6 6.7269 2.4497 0.3993 9 6 5.8851 1.3846 0.8316 10 6 6.1335 0.3976 1.8911 11 8 5.2620 -0.3918 2.2036 12 7 7.3269 0.3667 2.5168 13 6 7.5744 -0.6171 3.5737 14 6 7.5727 -0.0149 4.9887 15 6 8.7625 -0.9417 5.2976 16 6 9.8505 -0.2818 6.1473 17 7 9.5309 -0.4508 7.5670 18 6 10.3671 0.0616 8.5228 19 1 11.2624 0.5898 8.2299 20 6 10.0640 -0.0981 9.8680 21 7 8.9726 -0.7415 10.2248 22 14 11.2051 0.6001 11.1717 23 1 10.7920 1.9886 11.4988 24 1 11.1318 -0.2392 12.3946 25 1 12.5984 0.6062 10.6583 26 6 9.0650 -0.9272 3.7899 27 6 3.5316 -0.7572 0.0016 28 7 2.2829 -1.1355 0.0010 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9186 2.1185 -0.0004 33 1 7.7007 2.7042 0.7908 34 1 8.0215 0.9962 2.2679 35 1 6.9529 -1.5074 3.4773 36 1 7.8269 1.0447 5.0125 37 1 6.6755 -0.2489 5.5617 38 1 8.4670 -1.9209 5.6742 39 1 10.8119 -0.7488 5.9333 40 1 9.9020 0.7809 5.9104 41 1 8.7266 -0.9249 7.8300 42 1 8.7606 -0.8527 11.1648 43 1 9.3710 -1.8967 3.3966 44 1 9.7281 -0.1174 3.4854 45 1 4.3921 -1.4097 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328893798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:07 Heat of formation + Delta-G solvation = 142.758398 kcal Electronic energy + Delta-G solvation = -28727.314137 eV Core-core repulsion = 24558.428960 eV Total energy + Delta-G solvation = -4168.885176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -45.19232 -41.50170 -40.03514 -38.27170 -34.61414 -34.36281 -34.07633 -33.09043 -32.57174 -30.84001 -29.87735 -27.38195 -26.84240 -25.50588 -25.14658 -23.50745 -23.00048 -21.81573 -21.32138 -20.82183 -20.56410 -19.44891 -18.49461 -17.91863 -17.50097 -17.02992 -16.31371 -16.10407 -15.88088 -15.20245 -15.09089 -14.88645 -14.66874 -14.49269 -14.00723 -13.72176 -13.51017 -13.36212 -13.21530 -13.12927 -12.95835 -12.85665 -12.28086 -12.03001 -11.79415 -11.61127 -11.23042 -11.15793 -10.84435 -10.82332 -10.71549 -10.34380 -10.17242 -10.11049 -10.06725 -9.87603 -9.82869 -9.61588 -9.02137 -8.83201 -8.63352 -6.88285 -5.73731 -3.02125 0.52931 1.45800 1.55614 1.94702 2.27574 2.68149 3.09452 3.14630 3.44884 3.49728 3.51695 3.90191 3.99433 4.29240 4.35259 4.43955 4.59781 4.65102 4.66277 4.75881 4.83579 4.88363 4.94385 5.03975 5.08591 5.13203 5.28042 5.35297 5.49975 5.59915 5.73670 5.84433 5.92807 6.06253 6.10875 6.12855 6.25456 6.30066 6.41635 6.44005 6.62499 6.80051 6.93882 7.24490 7.39715 7.71789 7.83408 8.09991 8.45397 9.56277 10.15751 10.50063 11.49178 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.001908 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.125154 B =14670.565684 C =15495.428423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.364 5.364 3 C 0.103 3.897 4 C -0.197 4.197 5 C 0.134 3.866 6 O 0.103 5.897 7 N -0.366 5.366 8 C 0.029 3.971 9 C -0.253 4.253 10 C 0.595 3.405 11 O -0.526 6.526 12 N -0.709 5.709 13 C 0.121 3.879 14 C -0.138 4.138 15 C -0.111 4.111 16 C 0.165 3.835 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.137 4.137 27 C 0.125 3.875 28 N -0.297 5.297 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.399 0.601 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 4.283 -27.364 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.142 5.142 3 C -0.048 4.048 4 C -0.210 4.210 5 C 0.067 3.933 6 O 0.043 5.957 7 N -0.071 5.071 8 C -0.151 4.151 9 C -0.261 4.261 10 C 0.381 3.619 11 O -0.403 6.403 12 N -0.359 5.359 13 C 0.017 3.983 14 C -0.177 4.177 15 C -0.130 4.130 16 C 0.038 3.962 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.176 4.176 27 C -0.063 4.063 28 N -0.116 5.116 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.202 0.798 33 H 0.215 0.785 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.539 3.821 -27.836 32.108 hybrid contribution 1.411 0.864 1.470 2.214 sum -14.128 4.685 -26.366 30.277 Atomic orbital electron populations 1.21994 0.73317 1.05157 1.03845 1.48325 1.07231 1.03750 1.54864 1.22956 0.89928 0.93868 0.98079 1.17651 0.88254 0.92022 1.23065 1.22039 0.93892 0.88057 0.89311 1.84893 1.28494 1.34745 1.47613 1.73548 0.94518 1.20539 1.18459 1.25015 1.01903 0.93384 0.94774 1.21432 0.97130 1.03232 1.04317 1.16727 0.82657 0.82424 0.80102 1.90850 1.43805 1.40513 1.65170 1.45843 1.14739 1.36920 1.38418 1.22705 0.97190 0.92438 0.85960 1.23482 0.99371 1.00015 0.94849 1.22565 0.96689 1.00004 0.93735 1.20598 0.94202 0.96223 0.85199 1.42357 1.28247 1.67769 0.99232 1.19234 1.02749 1.28377 0.86664 0.91254 1.24750 0.97965 1.01332 0.97101 1.69661 1.25890 1.46788 1.15851 0.86191 0.80069 0.78314 0.81625 1.21777 1.21786 1.20794 1.23337 0.94888 1.02244 0.97082 1.23869 0.95014 0.92647 0.94767 1.77295 1.01551 1.07368 1.25405 0.90159 0.88724 0.89046 0.79755 0.78450 0.76684 0.86753 0.89800 0.91081 0.88826 0.96346 0.96401 0.78243 0.93542 0.90891 0.89669 0.79394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.45 59.85 0.68 1.03 16 2 N -0.36 -2.96 3.99 -67.55 -0.27 -3.23 16 3 C 0.10 0.78 11.51 -16.47 -0.19 0.59 16 4 C -0.20 -1.97 5.56 -105.08 -0.58 -2.55 16 5 C 0.13 1.37 7.39 -35.24 -0.26 1.11 16 6 O 0.10 1.03 11.17 16.65 0.19 1.22 16 7 N -0.37 -3.76 11.97 30.85 0.37 -3.40 16 8 C 0.03 0.25 11.68 -16.75 -0.20 0.06 16 9 C -0.25 -2.63 6.36 -104.12 -0.66 -3.29 16 10 C 0.59 7.15 7.80 -12.75 -0.10 7.05 16 11 O -0.53 -7.95 14.21 5.21 0.07 -7.87 16 12 N -0.71 -7.32 5.36 -54.25 -0.29 -7.61 16 13 C 0.12 1.46 4.21 -67.12 -0.28 1.17 16 14 C -0.14 -2.02 7.45 -25.83 -0.19 -2.21 16 15 C -0.11 -1.71 3.75 -89.71 -0.34 -2.05 16 16 C 0.17 3.26 6.10 -4.04 -0.02 3.23 16 17 N -0.73 -18.67 5.60 -59.91 -0.34 -19.01 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.14 -1.57 7.39 -25.92 -0.19 -1.77 16 27 C 0.12 1.37 10.40 -16.96 -0.18 1.19 16 28 N -0.30 -3.33 12.50 30.87 0.39 -2.94 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.20 1.05 7.77 -52.49 -0.41 0.64 16 34 H 0.40 3.04 7.96 -40.82 -0.33 2.71 16 35 H 0.11 1.50 7.50 -51.93 -0.39 1.11 16 36 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.02 0.36 7.85 -51.93 -0.41 -0.05 16 41 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 45 H 0.19 1.92 7.85 -52.49 -0.41 1.51 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -36.53 389.02 -7.09 -43.61 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.01 Total: 7.55 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.76 Total: -3.89 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 0.58 Total: -64.05 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.26 Total: -6.66 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.53 -7.09 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328893798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.369 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds