Wall clock time and date at job start Wed Apr 1 2020 03:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34453 * 125.77215 * 2 1 4 4 C 1.38066 * 107.39340 * 179.97438 * 3 2 1 5 5 C 1.47355 * 126.41256 * 180.02562 * 4 3 2 6 6 O 1.34256 * 127.19556 * 312.20357 * 5 4 3 7 7 N 1.20735 * 111.95509 * 179.97438 * 6 5 4 8 8 C 1.29881 * 112.81148 * 0.02562 * 7 6 5 9 9 C 1.39933 * 127.19627 * 131.89476 * 5 4 3 10 10 C 1.46913 * 128.39843 * 359.97438 * 9 5 4 11 11 O 1.21673 * 119.99769 * 354.42033 * 10 9 5 12 12 N 1.34775 * 119.99952 * 174.41684 * 10 9 5 13 13 C 1.46499 * 119.99913 * 179.97438 * 12 10 9 14 14 C 1.53780 * 113.61715 * 254.14019 * 13 12 10 15 15 C 1.53953 * 87.02064 * 220.04545 * 14 13 12 16 16 C 1.53004 * 113.66431 * 139.92917 * 15 14 13 17 17 N 1.46497 * 109.47187 * 87.44680 * 16 15 14 18 18 C 1.36939 * 120.00264 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99488 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00352 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99670 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47136 * 90.00034 * 22 20 18 24 24 H 1.48505 * 109.47051 * 209.99649 * 22 20 18 25 25 H 1.48494 * 109.47379 * 329.99927 * 22 20 18 26 26 C 1.53781 * 113.61617 * 156.53028 * 13 12 10 27 27 C 1.41309 * 107.18034 * 359.97438 * 4 3 2 28 28 N 1.30482 * 108.05130 * 0.02562 * 27 4 3 29 29 H 1.08993 * 109.47014 * 89.99658 * 1 2 3 30 30 H 1.09000 * 109.47458 * 210.00596 * 1 2 3 31 31 H 1.09002 * 109.46747 * 330.00078 * 1 2 3 32 32 H 1.08000 * 126.30229 * 359.97438 * 3 2 1 33 33 H 1.07996 * 126.78483 * 180.02562 * 8 7 6 34 34 H 0.96998 * 120.00457 * 0.02562 * 12 10 9 35 35 H 1.09001 * 112.85024 * 25.33909 * 13 12 10 36 36 H 1.08995 * 113.61336 * 334.56669 * 14 13 12 37 37 H 1.08996 * 113.61581 * 105.47004 * 14 13 12 38 38 H 1.08998 * 113.61810 * 270.80146 * 15 14 13 39 39 H 1.09007 * 109.47089 * 207.44403 * 16 15 14 40 40 H 1.08997 * 109.47140 * 327.43933 * 16 15 14 41 41 H 0.96999 * 119.99909 * 359.97438 * 17 16 15 42 42 H 0.96998 * 120.00127 * 180.02562 * 21 20 18 43 43 H 1.09006 * 113.61765 * 254.53209 * 26 13 12 44 44 H 1.09002 * 113.61523 * 25.43460 * 26 13 12 45 45 H 1.07993 * 125.97542 * 179.73648 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.0909 0.0000 4 6 3.5612 0.6556 0.0006 5 6 4.7652 1.5051 0.0013 6 8 5.0145 2.5602 -0.7906 7 7 6.0889 3.0579 -0.5545 8 6 6.7269 2.4497 0.3993 9 6 5.8851 1.3846 0.8316 10 6 6.1335 0.3976 1.8911 11 8 5.2620 -0.3918 2.2036 12 7 7.3269 0.3667 2.5168 13 6 7.5744 -0.6171 3.5737 14 6 7.5727 -0.0149 4.9887 15 6 8.7625 -0.9417 5.2976 16 6 9.8505 -0.2818 6.1473 17 7 9.5309 -0.4508 7.5670 18 6 10.3671 0.0616 8.5228 19 1 11.2624 0.5898 8.2299 20 6 10.0640 -0.0981 9.8680 21 7 8.9726 -0.7415 10.2248 22 14 11.2051 0.6001 11.1717 23 1 10.7920 1.9886 11.4988 24 1 11.1318 -0.2392 12.3946 25 1 12.5984 0.6062 10.6583 26 6 9.0650 -0.9272 3.7899 27 6 3.5316 -0.7572 0.0016 28 7 2.2829 -1.1355 0.0010 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9186 2.1185 -0.0004 33 1 7.7007 2.7042 0.7908 34 1 8.0215 0.9962 2.2679 35 1 6.9529 -1.5074 3.4773 36 1 7.8269 1.0447 5.0125 37 1 6.6755 -0.2489 5.5617 38 1 8.4670 -1.9209 5.6742 39 1 10.8119 -0.7488 5.9333 40 1 9.9020 0.7809 5.9104 41 1 8.7266 -0.9249 7.8300 42 1 8.7606 -0.8527 11.1648 43 1 9.3710 -1.8967 3.3966 44 1 9.7281 -0.1174 3.4854 45 1 4.3921 -1.4097 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328893798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:06 Heat of formation + Delta-G solvation = 116.857176 kcal Electronic energy + Delta-G solvation = -28728.437298 eV Core-core repulsion = 24558.428960 eV Total energy + Delta-G solvation = -4170.008337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.91459 -42.16026 -41.05888 -39.38105 -36.31982 -35.19459 -34.79099 -34.22381 -33.27356 -32.74245 -30.55824 -28.60095 -27.72014 -26.59850 -26.22255 -24.92045 -23.99575 -22.93286 -22.04495 -21.74481 -21.45994 -20.59001 -19.30114 -19.00196 -18.65006 -18.23136 -17.31803 -16.91997 -16.60582 -16.42398 -16.20175 -15.90357 -15.82300 -15.43550 -15.19019 -15.06713 -14.66310 -14.53576 -14.32051 -14.06507 -13.64614 -13.32916 -13.31252 -13.22404 -13.01593 -12.87947 -12.75218 -12.69141 -12.18174 -12.06752 -11.92919 -11.83531 -11.55689 -11.35949 -11.27425 -11.05656 -10.87719 -10.85291 -10.52994 -9.98765 -9.33272 -8.96563 -7.93699 -5.22213 -0.21956 0.79799 0.85394 1.37035 1.47476 1.49558 1.57074 1.58039 1.90347 2.21267 2.31487 2.57297 3.25090 3.36413 3.39271 3.59126 3.62545 3.64473 3.83317 3.86513 3.92776 3.97097 4.10287 4.21747 4.33612 4.43370 4.45828 4.62300 4.66806 4.67589 4.69811 4.73892 4.84745 4.85334 4.93915 5.00214 5.04684 5.16579 5.26880 5.38836 5.44454 5.51754 5.67999 5.91418 6.28937 6.54760 6.55953 7.11078 7.22857 7.34523 8.13433 8.34854 9.30097 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.001908 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.125154 B =14670.565684 C =15495.428423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.118 3.882 4 C -0.225 4.225 5 C 0.141 3.859 6 O 0.099 5.901 7 N -0.384 5.384 8 C 0.046 3.954 9 C -0.270 4.270 10 C 0.596 3.404 11 O -0.563 6.563 12 N -0.696 5.696 13 C 0.135 3.865 14 C -0.141 4.141 15 C -0.114 4.114 16 C 0.164 3.836 17 N -0.747 5.747 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.267 1.267 26 C -0.113 4.113 27 C 0.112 3.888 28 N -0.332 5.332 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.225 0.775 33 H 0.232 0.768 34 H 0.415 0.585 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.025 0.975 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 6.056 -28.811 32.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.035 4.035 4 C -0.239 4.239 5 C 0.074 3.926 6 O 0.041 5.959 7 N -0.091 5.091 8 C -0.134 4.134 9 C -0.278 4.278 10 C 0.383 3.617 11 O -0.442 6.442 12 N -0.347 5.347 13 C 0.030 3.970 14 C -0.180 4.180 15 C -0.134 4.134 16 C 0.038 3.962 17 N -0.390 5.390 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.192 1.192 26 C -0.151 4.151 27 C -0.075 4.075 28 N -0.153 5.153 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.241 0.759 33 H 0.248 0.752 34 H 0.253 0.747 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.867 5.612 -29.348 33.374 hybrid contribution 1.123 0.324 1.856 2.193 sum -13.744 5.936 -27.492 31.304 Atomic orbital electron populations 1.22395 0.70836 1.06472 1.05501 1.48714 1.08603 1.03097 1.53572 1.23565 0.89002 0.95257 0.95640 1.17841 0.89374 0.91667 1.24992 1.22151 0.93864 0.87756 0.88810 1.84890 1.28637 1.34748 1.47580 1.73543 0.94867 1.21319 1.19390 1.25481 1.02532 0.91875 0.93530 1.21316 0.98129 1.03820 1.04554 1.16929 0.82457 0.82163 0.80153 1.90840 1.45034 1.42025 1.66343 1.45650 1.14822 1.36746 1.37477 1.22370 0.97629 0.92038 0.84966 1.23481 0.98005 0.99999 0.96485 1.22469 0.95986 0.99104 0.95819 1.20796 0.95694 0.96946 0.82805 1.42628 1.27493 1.67446 1.01406 1.19681 1.02983 1.27359 0.87513 0.90454 1.25616 0.99749 1.02510 0.99415 1.69829 1.27899 1.48747 1.15802 0.85114 0.78735 0.77263 0.78505 1.21438 1.22324 1.19222 1.23237 0.94580 1.04087 0.93209 1.23872 0.95031 0.93399 0.95209 1.77205 1.02038 1.09360 1.26705 0.88309 0.89122 0.86065 0.75858 0.75170 0.74732 0.87899 0.89637 0.93417 0.90147 0.95943 0.95686 0.79660 0.94100 0.89199 0.87378 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.45 127.77 1.46 1.93 16 2 N -0.36 -5.53 3.99 -367.61 -1.47 -6.99 16 3 C 0.12 1.61 11.51 84.25 0.97 2.58 16 4 C -0.23 -4.46 5.56 -20.16 -0.11 -4.57 16 5 C 0.14 2.78 7.39 25.08 0.19 2.97 16 6 O 0.10 1.86 11.17 69.81 0.78 2.64 16 7 N -0.38 -7.23 11.97 -56.82 -0.68 -7.91 16 8 C 0.05 0.69 11.68 86.04 1.01 1.70 16 9 C -0.27 -5.31 6.36 -19.54 -0.12 -5.43 16 10 C 0.60 13.90 7.80 86.51 0.67 14.57 16 11 O -0.56 -17.29 14.21 -4.26 -0.06 -17.35 16 12 N -0.70 -13.12 5.36 -443.78 -2.38 -15.50 16 13 C 0.13 3.09 4.21 45.52 0.19 3.28 16 14 C -0.14 -4.07 7.45 31.18 0.23 -3.84 16 15 C -0.11 -3.46 3.75 -10.21 -0.04 -3.49 16 16 C 0.16 6.29 6.10 86.38 0.53 6.82 16 17 N -0.75 -38.38 5.60 -343.45 -1.92 -40.31 16 18 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 22 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.11 -2.30 7.39 31.12 0.23 -2.07 16 27 C 0.11 2.56 10.40 85.65 0.89 3.45 16 28 N -0.33 -7.64 12.50 -56.25 -0.70 -8.35 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.23 1.61 7.77 -2.91 -0.02 1.59 16 34 H 0.42 5.04 7.96 -92.71 -0.74 4.31 16 35 H 0.10 2.68 7.50 -2.39 -0.02 2.66 16 36 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.03 0.94 7.85 -2.39 -0.02 0.92 16 41 H 0.37 20.58 7.67 -92.71 -0.71 19.87 16 42 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.11 1.77 8.07 -2.39 -0.02 1.75 16 45 H 0.18 4.08 7.85 -2.91 -0.02 4.06 16 Total: -1.00 -80.97 389.02 2.88 -78.09 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.40 Total: 26.75 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 7.40 Total: 0.74 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -6.87 Total: -139.45 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.72 Total: -14.70 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -80.97 2.88 -78.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328893798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.945 kcal (2) G-P(sol) polarization free energy of solvation -80.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds