Wall clock time and date at job start Wed Apr 1 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46923 * 2 1 4 4 C 1.35973 * 116.99959 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98188 * 359.71754 * 4 3 2 6 6 C 1.38098 * 120.01212 * 179.72891 * 5 4 3 7 7 C 1.38846 * 119.98314 * 0.57441 * 6 5 4 8 8 N 1.40104 * 120.01629 * 179.68001 * 7 6 5 9 9 C 1.46497 * 119.99808 * 67.91206 * 8 7 6 10 10 C 1.50704 * 109.47159 * 90.00530 * 9 8 7 11 11 H 1.08004 * 120.00022 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00252 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99975 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47127 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47070 * 119.99810 * 14 12 10 17 17 H 1.48504 * 109.46834 * 239.99680 * 14 12 10 18 18 C 1.34775 * 120.00002 * 247.91688 * 8 7 6 19 19 O 1.21292 * 120.00322 * 4.73346 * 18 8 7 20 20 C 1.50710 * 119.99895 * 184.73746 * 18 8 7 21 21 N 1.46501 * 109.47033 * 180.02562 * 20 18 8 22 22 C 1.34339 * 126.76439 * 125.00017 * 21 20 18 23 23 N 1.30884 * 108.21581 * 179.97438 * 22 21 20 24 24 C 1.33660 * 109.76674 * 0.02562 * 23 22 21 25 25 N 1.39605 * 125.60796 * 180.02562 * 24 23 22 26 26 N 1.31205 * 108.77741 * 359.71237 * 24 23 22 27 27 C 1.38850 * 119.96884 * 359.70482 * 7 6 5 28 28 C 1.38082 * 119.98633 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.46652 * 300.00126 * 1 2 3 30 30 H 1.08996 * 109.47155 * 59.99886 * 1 2 3 31 31 H 1.08993 * 109.46514 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47026 * 239.99981 * 2 1 3 33 33 H 1.08996 * 109.47155 * 120.00114 * 2 1 3 34 34 H 1.07998 * 119.99505 * 359.97438 * 5 4 3 35 35 H 1.07994 * 120.00967 * 180.27658 * 6 5 4 36 36 H 1.08998 * 109.47259 * 210.00127 * 9 8 7 37 37 H 1.09000 * 109.47643 * 330.00261 * 9 8 7 38 38 H 0.97000 * 120.00096 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46802 * 299.99500 * 20 18 8 40 40 H 1.08992 * 109.47160 * 59.99756 * 20 18 8 41 41 H 1.07995 * 125.89089 * 0.03046 * 22 21 20 42 42 H 0.96995 * 119.99928 * 359.96798 * 25 24 23 43 43 H 0.97003 * 119.99567 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00640 * 180.02562 * 27 7 6 45 45 H 1.08004 * 119.98974 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1991 0.4251 0.0049 6 6 5.5682 0.6054 -0.0013 7 6 6.0992 1.8883 -0.0009 8 7 7.4882 2.0719 -0.0005 9 6 8.2772 1.6952 -1.1759 10 6 8.3755 2.8713 -2.1130 11 1 7.8976 3.8059 -1.8586 12 6 9.0746 2.7541 -3.2956 13 7 9.6561 1.6160 -3.6056 14 14 9.1958 4.2118 -4.4574 15 1 8.4601 5.3661 -3.8817 16 1 10.6226 4.5776 -4.6455 17 1 8.6004 3.8502 -5.7690 18 6 8.0984 2.5951 1.0814 19 8 7.4588 2.8270 2.0856 20 6 9.5754 2.8919 1.0434 21 7 9.9947 3.4496 2.3317 22 6 10.9750 2.9889 3.1264 23 7 11.0402 3.7582 4.1833 24 6 10.1168 4.7208 4.0995 25 7 9.8975 5.7216 5.0478 26 7 9.4548 4.5744 2.9762 27 6 5.2531 2.9892 -0.0005 28 6 3.8842 2.8075 -0.0010 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.7859 -0.5727 0.0099 35 1 6.2258 -0.2513 -0.0017 36 1 9.2773 1.3965 -0.8617 37 1 7.7932 0.8629 -1.6869 38 1 10.1476 1.5333 -4.4377 39 1 10.1262 1.9714 0.8499 40 1 9.7811 3.6118 0.2513 41 1 11.6017 2.1323 2.9271 42 1 10.4403 5.7561 5.8509 43 1 9.2021 6.3824 4.9036 44 1 5.6655 3.9873 -0.0006 45 1 3.2260 3.6638 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361746136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:04 Heat of formation + Delta-G solvation = 62.794988 kcal Electronic energy + Delta-G solvation = -29736.979577 eV Core-core repulsion = 25564.626927 eV Total energy + Delta-G solvation = -4172.352650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64922 -40.19083 -39.23448 -37.14458 -34.96299 -34.76737 -32.77192 -32.52270 -31.79531 -30.67332 -30.36403 -28.96145 -27.39773 -26.55373 -24.06864 -23.22250 -22.59929 -21.74112 -21.45517 -20.98405 -19.08608 -18.11431 -17.25948 -16.90140 -16.59279 -16.37112 -16.14541 -16.05062 -15.65968 -15.38246 -15.03511 -14.57150 -14.38256 -14.16547 -13.93750 -13.63253 -13.33148 -13.22868 -13.00216 -12.81350 -12.53902 -12.30566 -12.12391 -11.85846 -11.70193 -11.60931 -11.46488 -11.12907 -10.94184 -10.87963 -10.70724 -10.59693 -10.30942 -9.91286 -9.63765 -9.57674 -9.24995 -8.71242 -8.67989 -8.38617 -7.97882 -7.51148 -6.32219 -4.40553 1.66826 1.68786 2.04806 2.50607 3.06739 3.15243 3.25007 3.27138 3.29969 3.44563 3.56533 3.79203 4.06928 4.24209 4.73194 4.80613 4.84404 4.90667 5.00901 5.05913 5.10849 5.14976 5.17700 5.37383 5.53498 5.63771 5.64789 5.68416 5.73370 5.86440 5.88508 6.15146 6.18562 6.29283 6.56024 6.64340 6.67570 6.79211 6.94002 7.01114 7.04121 7.41210 7.56433 7.60534 7.61000 7.66321 7.86172 8.01794 8.61633 8.66106 8.78361 9.28774 10.74274 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.006884 B = 0.003869 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4066.211055 B = 7235.213010 C =10299.086849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.115 3.885 5 C -0.199 4.199 6 C -0.083 4.083 7 C 0.141 3.859 8 N -0.556 5.556 9 C 0.236 3.764 10 C -0.543 4.543 11 H 0.064 0.936 12 C 0.069 3.931 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.509 3.491 19 O -0.528 6.528 20 C 0.120 3.880 21 N -0.358 5.358 22 C 0.273 3.727 23 N -0.579 5.579 24 C 0.456 3.544 25 N -0.831 5.831 26 N -0.336 5.336 27 C -0.065 4.065 28 C -0.142 4.142 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.218 0.782 42 H 0.409 0.591 43 H 0.410 0.590 44 H 0.128 0.872 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -2.692 8.193 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.070 3.930 5 C -0.219 4.219 6 C -0.103 4.103 7 C 0.049 3.951 8 N -0.285 5.285 9 C 0.118 3.882 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.207 1.207 18 C 0.296 3.704 19 O -0.404 6.404 20 C -0.006 4.006 21 N -0.149 5.149 22 C -0.025 4.025 23 N -0.313 5.313 24 C 0.084 3.916 25 N -0.388 5.388 26 N -0.173 5.173 27 C -0.084 4.084 28 C -0.161 4.161 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.234 0.766 42 H 0.239 0.761 43 H 0.240 0.760 44 H 0.146 0.854 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.816 -2.215 8.462 11.089 hybrid contribution 0.334 0.400 -0.948 1.082 sum -6.482 -1.815 7.513 10.088 Atomic orbital electron populations 1.21764 0.93064 1.02593 1.03394 1.22723 0.95554 0.82488 1.01351 1.86045 1.19385 1.28782 1.89193 1.18878 0.81832 0.94128 0.98143 1.20963 0.93663 0.97732 1.09507 1.20959 0.94366 0.96519 0.98420 1.17386 0.83520 0.92461 1.01685 1.45839 1.04674 1.61333 1.16681 1.19631 0.90461 0.97030 0.81127 1.21487 1.34206 0.98282 1.04152 0.91741 1.24908 0.94828 0.96155 0.97564 1.69909 1.33798 1.24421 1.24531 0.86460 0.78006 0.82498 0.80740 1.19517 1.20707 1.20738 1.20342 0.89345 0.77692 0.83054 1.90736 1.66313 1.51719 1.31673 1.21692 0.94746 1.01783 0.82346 1.49644 1.26150 1.21387 1.17711 1.25744 0.91791 0.98780 0.86183 1.70149 1.27111 1.08953 1.25098 1.20483 0.90887 0.90531 0.89707 1.40816 1.44025 1.31501 1.22436 1.78356 1.23484 1.06149 1.09318 1.21055 0.91909 0.98984 0.96466 1.20204 0.94592 0.94670 1.06656 0.91659 0.91583 0.90596 0.92087 0.92229 0.85665 0.85680 0.94181 0.93905 0.92375 0.85302 0.84991 0.76612 0.76084 0.75960 0.85433 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.05 0.57 5.46 37.16 0.20 0.77 16 3 O -0.32 -4.59 10.14 -19.66 -0.20 -4.79 16 4 C 0.11 1.84 6.69 -39.23 -0.26 1.58 16 5 C -0.20 -3.07 9.03 -39.46 -0.36 -3.43 16 6 C -0.08 -1.44 9.68 -39.41 -0.38 -1.82 16 7 C 0.14 2.75 4.76 -83.62 -0.40 2.36 16 8 N -0.56 -11.14 2.51 -114.69 -0.29 -11.43 16 9 C 0.24 5.08 4.88 -5.19 -0.03 5.05 16 10 C -0.54 -13.10 9.16 -34.44 -0.32 -13.42 16 11 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -22.84 13.29 55.43 0.74 -22.10 16 14 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.51 10.12 7.56 -10.98 -0.08 10.04 16 19 O -0.53 -12.04 15.51 5.55 0.09 -11.95 16 20 C 0.12 1.99 5.69 -5.19 -0.03 1.96 16 21 N -0.36 -6.13 3.40 -63.82 -0.22 -6.35 16 22 C 0.27 3.95 12.61 -90.69 -1.14 2.81 16 23 N -0.58 -9.46 11.21 -14.98 -0.17 -9.63 16 24 C 0.46 7.77 9.44 -321.16 -3.03 4.74 16 25 N -0.83 -10.49 9.13 30.00 0.27 -10.21 16 26 N -0.34 -6.47 11.85 29.99 0.36 -6.11 16 27 C -0.06 -1.22 9.54 -39.41 -0.38 -1.60 16 28 C -0.14 -2.40 9.98 -39.46 -0.39 -2.79 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 33 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.13 1.56 6.29 -52.49 -0.33 1.23 16 35 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.04 0.83 6.47 -51.93 -0.34 0.49 16 37 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.13 1.70 7.20 -51.93 -0.37 1.33 16 40 H 0.13 2.29 7.91 -51.93 -0.41 1.88 16 41 H 0.22 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.41 4.11 8.96 -40.82 -0.37 3.75 16 43 H 0.41 4.52 8.96 -40.82 -0.37 4.16 16 44 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 45 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -33.28 389.86 -10.77 -44.04 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.89 Total: 10.91 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -6.31 Total: 7.04 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: 0.69 Total: -65.83 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.11 Total: -16.74 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.28 -10.77 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361746136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.837 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds