Wall clock time and date at job start Wed Apr 1 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46923 * 2 1 4 4 C 1.35973 * 116.99959 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98188 * 359.71754 * 4 3 2 6 6 C 1.38098 * 120.01212 * 179.72891 * 5 4 3 7 7 C 1.38846 * 119.98314 * 0.57441 * 6 5 4 8 8 N 1.40104 * 120.01629 * 179.68001 * 7 6 5 9 9 C 1.46497 * 119.99808 * 67.91206 * 8 7 6 10 10 C 1.50704 * 109.47159 * 90.00530 * 9 8 7 11 11 H 1.08004 * 120.00022 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00252 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99975 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47127 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47070 * 119.99810 * 14 12 10 17 17 H 1.48504 * 109.46834 * 239.99680 * 14 12 10 18 18 C 1.34775 * 120.00002 * 247.91688 * 8 7 6 19 19 O 1.21292 * 120.00322 * 4.73346 * 18 8 7 20 20 C 1.50710 * 119.99895 * 184.73746 * 18 8 7 21 21 N 1.46501 * 109.47033 * 180.02562 * 20 18 8 22 22 C 1.34339 * 126.76439 * 125.00017 * 21 20 18 23 23 N 1.30884 * 108.21581 * 179.97438 * 22 21 20 24 24 C 1.33660 * 109.76674 * 0.02562 * 23 22 21 25 25 N 1.39605 * 125.60796 * 180.02562 * 24 23 22 26 26 N 1.31205 * 108.77741 * 359.71237 * 24 23 22 27 27 C 1.38850 * 119.96884 * 359.70482 * 7 6 5 28 28 C 1.38082 * 119.98633 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.46652 * 300.00126 * 1 2 3 30 30 H 1.08996 * 109.47155 * 59.99886 * 1 2 3 31 31 H 1.08993 * 109.46514 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47026 * 239.99981 * 2 1 3 33 33 H 1.08996 * 109.47155 * 120.00114 * 2 1 3 34 34 H 1.07998 * 119.99505 * 359.97438 * 5 4 3 35 35 H 1.07994 * 120.00967 * 180.27658 * 6 5 4 36 36 H 1.08998 * 109.47259 * 210.00127 * 9 8 7 37 37 H 1.09000 * 109.47643 * 330.00261 * 9 8 7 38 38 H 0.97000 * 120.00096 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46802 * 299.99500 * 20 18 8 40 40 H 1.08992 * 109.47160 * 59.99756 * 20 18 8 41 41 H 1.07995 * 125.89089 * 0.03046 * 22 21 20 42 42 H 0.96995 * 119.99928 * 359.96798 * 25 24 23 43 43 H 0.97003 * 119.99567 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00640 * 180.02562 * 27 7 6 45 45 H 1.08004 * 119.98974 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1991 0.4251 0.0049 6 6 5.5682 0.6054 -0.0013 7 6 6.0992 1.8883 -0.0009 8 7 7.4882 2.0719 -0.0005 9 6 8.2772 1.6952 -1.1759 10 6 8.3755 2.8713 -2.1130 11 1 7.8976 3.8059 -1.8586 12 6 9.0746 2.7541 -3.2956 13 7 9.6561 1.6160 -3.6056 14 14 9.1958 4.2118 -4.4574 15 1 8.4601 5.3661 -3.8817 16 1 10.6226 4.5776 -4.6455 17 1 8.6004 3.8502 -5.7690 18 6 8.0984 2.5951 1.0814 19 8 7.4588 2.8270 2.0856 20 6 9.5754 2.8919 1.0434 21 7 9.9947 3.4496 2.3317 22 6 10.9750 2.9889 3.1264 23 7 11.0402 3.7582 4.1833 24 6 10.1168 4.7208 4.0995 25 7 9.8975 5.7216 5.0478 26 7 9.4548 4.5744 2.9762 27 6 5.2531 2.9892 -0.0005 28 6 3.8842 2.8075 -0.0010 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.7859 -0.5727 0.0099 35 1 6.2258 -0.2513 -0.0017 36 1 9.2773 1.3965 -0.8617 37 1 7.7932 0.8629 -1.6869 38 1 10.1476 1.5333 -4.4377 39 1 10.1262 1.9714 0.8499 40 1 9.7811 3.6118 0.2513 41 1 11.6017 2.1323 2.9271 42 1 10.4403 5.7561 5.8509 43 1 9.2021 6.3824 4.9036 44 1 5.6655 3.9873 -0.0006 45 1 3.2260 3.6638 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361746136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:03 Heat of formation + Delta-G solvation = 44.752971 kcal Electronic energy + Delta-G solvation = -29737.761937 eV Core-core repulsion = 25564.626927 eV Total energy + Delta-G solvation = -4173.135010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.87603 -41.55199 -40.55988 -38.45870 -36.53928 -35.96769 -34.54083 -33.76345 -32.72692 -31.95371 -31.61045 -30.32826 -29.04608 -27.91104 -25.19861 -24.85311 -23.88824 -22.97573 -22.62313 -22.21223 -20.50534 -19.28438 -18.73217 -18.56715 -17.93271 -17.71419 -17.41551 -17.03045 -16.97601 -16.67593 -16.46684 -16.10566 -15.83734 -15.46320 -15.08217 -14.85844 -14.52750 -14.44623 -14.36814 -14.21784 -13.76582 -13.68117 -13.43568 -13.21221 -12.98445 -12.86687 -12.71125 -12.67571 -12.61619 -12.18529 -12.04601 -11.91778 -11.66480 -11.59364 -11.01649 -10.88538 -10.66835 -10.57341 -10.03008 -9.92470 -9.16678 -8.91521 -8.21428 -6.34454 0.32632 0.33211 0.85007 1.29711 1.39116 1.44678 1.51570 1.57984 2.12118 2.22708 2.27494 2.41077 2.65707 2.72275 3.09951 3.50069 3.69107 3.80325 3.87054 3.90288 4.08405 4.17918 4.28739 4.32738 4.36106 4.39480 4.41242 4.53656 4.67256 4.90590 4.95789 4.96403 5.00292 5.08570 5.15826 5.19776 5.30900 5.46110 5.48404 5.57201 5.70170 5.85744 6.01226 6.02814 6.40714 6.46147 6.47811 6.58196 6.75880 7.19997 7.38162 7.52267 8.83455 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.006884 B = 0.003869 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4066.211055 B = 7235.213010 C =10299.086849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.329 6.329 4 C 0.119 3.881 5 C -0.191 4.191 6 C -0.089 4.089 7 C 0.105 3.895 8 N -0.554 5.554 9 C 0.250 3.750 10 C -0.547 4.547 11 H 0.047 0.953 12 C 0.035 3.965 13 N -0.911 5.911 14 Si 0.944 3.056 15 H -0.278 1.278 16 H -0.274 1.274 17 H -0.281 1.281 18 C 0.506 3.494 19 O -0.562 6.562 20 C 0.128 3.872 21 N -0.372 5.372 22 C 0.285 3.715 23 N -0.595 5.595 24 C 0.448 3.552 25 N -0.816 5.816 26 N -0.389 5.389 27 C -0.084 4.084 28 C -0.150 4.150 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.137 0.863 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.269 0.731 39 H 0.167 0.833 40 H 0.121 0.879 41 H 0.268 0.732 42 H 0.421 0.579 43 H 0.417 0.583 44 H 0.110 0.890 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -4.171 8.350 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.243 6.243 4 C 0.073 3.927 5 C -0.210 4.210 6 C -0.109 4.109 7 C 0.014 3.986 8 N -0.282 5.282 9 C 0.131 3.869 10 C -0.585 4.585 11 H 0.066 0.934 12 C -0.167 4.167 13 N -0.549 5.549 14 Si 0.771 3.229 15 H -0.203 1.203 16 H -0.199 1.199 17 H -0.207 1.207 18 C 0.294 3.706 19 O -0.440 6.440 20 C 0.002 3.998 21 N -0.162 5.162 22 C -0.011 4.011 23 N -0.330 5.330 24 C 0.075 3.925 25 N -0.375 5.375 26 N -0.228 5.228 27 C -0.104 4.104 28 C -0.169 4.169 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.184 0.816 40 H 0.139 0.861 41 H 0.284 0.716 42 H 0.254 0.746 43 H 0.248 0.752 44 H 0.128 0.872 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.017 -3.682 8.636 11.721 hybrid contribution 0.269 0.821 -0.946 1.281 sum -6.748 -2.861 7.690 10.623 Atomic orbital electron populations 1.21800 0.91215 1.04248 1.03169 1.23123 0.97088 0.80752 1.02392 1.86059 1.18081 1.31475 1.88722 1.18948 0.82930 0.93851 0.96932 1.21294 0.92757 0.99220 1.07726 1.21164 0.95545 0.95942 0.98229 1.17731 0.83427 0.93636 1.03778 1.45780 1.05010 1.61206 1.16179 1.19361 0.90974 0.95398 0.81174 1.21606 1.33657 0.98417 1.04835 0.93431 1.25415 0.94784 0.97856 0.98618 1.69956 1.34478 1.25450 1.25051 0.85712 0.78072 0.80058 0.79081 1.20294 1.19932 1.20724 1.20890 0.90601 0.76787 0.82351 1.90706 1.67427 1.53098 1.32797 1.21686 0.92883 1.02928 0.82262 1.49604 1.27041 1.21513 1.18072 1.26815 0.90667 0.98921 0.84692 1.70210 1.27362 1.09395 1.26053 1.20917 0.90593 0.91143 0.89799 1.40864 1.44111 1.30526 1.22022 1.78258 1.25652 1.08083 1.10779 1.21018 0.93032 0.98244 0.98115 1.20357 0.93964 0.96068 1.06490 0.91857 0.91868 0.87975 0.91062 0.91056 0.82261 0.84472 0.92903 0.95463 0.92162 0.81606 0.86088 0.71618 0.74636 0.75198 0.87216 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.04 0.75 5.46 71.98 0.39 1.14 16 3 O -0.33 -8.89 10.14 -93.25 -0.95 -9.83 16 4 C 0.12 3.69 6.69 22.50 0.15 3.84 16 5 C -0.19 -5.58 9.03 22.35 0.20 -5.38 16 6 C -0.09 -3.06 9.68 22.38 0.22 -2.84 16 7 C 0.11 4.21 4.76 38.11 0.18 4.39 16 8 N -0.55 -22.59 2.51 -635.16 -1.59 -24.18 16 9 C 0.25 10.82 4.88 85.63 0.42 11.23 16 10 C -0.55 -26.68 9.16 25.60 0.23 -26.45 16 11 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 12 C 0.03 1.72 5.46 84.66 0.46 2.18 16 13 N -0.91 -46.30 13.29 21.45 0.28 -46.01 16 14 Si 0.94 40.45 29.54 68.60 2.03 42.47 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.51 20.44 7.56 87.66 0.66 21.11 16 19 O -0.56 -26.33 15.51 -3.07 -0.05 -26.38 16 20 C 0.13 4.20 5.69 85.64 0.49 4.68 16 21 N -0.37 -12.52 3.40 -355.84 -1.21 -13.73 16 22 C 0.29 7.73 12.61 180.37 2.27 10.01 16 23 N -0.60 -18.73 11.21 -201.31 -2.26 -20.99 16 24 C 0.45 15.15 9.44 260.91 2.46 17.61 16 25 N -0.82 -20.26 9.13 -59.00 -0.54 -20.80 16 26 N -0.39 -15.20 11.85 -59.02 -0.70 -15.90 16 27 C -0.08 -3.34 9.54 22.38 0.21 -3.13 16 28 C -0.15 -5.13 9.98 22.35 0.22 -4.91 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.18 7.67 -2.39 -0.02 1.16 16 33 H 0.07 1.16 7.65 -2.39 -0.02 1.14 16 34 H 0.16 3.46 6.29 -2.91 -0.02 3.44 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.05 2.14 6.47 -2.39 -0.02 2.13 16 37 H 0.03 1.27 7.86 -2.39 -0.02 1.25 16 38 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 39 H 0.17 4.06 7.20 -2.39 -0.02 4.04 16 40 H 0.12 4.25 7.91 -2.39 -0.02 4.23 16 41 H 0.27 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.42 8.10 8.96 -92.71 -0.83 7.27 16 43 H 0.42 9.14 8.96 -92.71 -0.83 8.31 16 44 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 45 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -73.05 389.86 3.73 -69.32 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.61 Total: 33.77 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 9.32 Total: 32.25 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -6.01 Total: -141.60 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.99 Total: -36.22 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -73.05 3.73 -69.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361746136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.072 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds