Wall clock time and date at job start Wed Apr 1 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46724 * 2 1 4 4 C 1.46506 * 120.00209 * 274.86638 * 3 2 1 5 5 C 1.50699 * 109.47103 * 270.00558 * 4 3 2 6 6 H 1.08003 * 119.99769 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00214 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00252 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99614 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47254 * 89.99958 * 9 7 5 11 11 H 1.48504 * 109.47024 * 210.00066 * 9 7 5 12 12 H 1.48499 * 109.47125 * 329.99731 * 9 7 5 13 13 C 1.34779 * 119.99898 * 94.87366 * 3 2 1 14 14 O 1.21480 * 119.99478 * 185.12321 * 13 3 2 15 15 C 1.48342 * 119.99903 * 5.12037 * 13 3 2 16 16 C 1.35562 * 125.76463 * 85.09809 * 15 13 3 17 17 C 1.46606 * 107.17391 * 180.02562 * 16 15 13 18 18 O 1.21680 * 126.49416 * 180.02562 * 17 16 15 19 19 N 1.34890 * 107.01809 * 359.72833 * 17 16 15 20 20 C 1.38784 * 125.89856 * 180.28888 * 19 17 16 21 21 N 1.32437 * 119.20657 * 179.89447 * 20 19 17 22 22 C 1.32275 * 120.74549 * 179.71520 * 21 20 19 23 23 C 1.50700 * 120.40695 * 180.27409 * 22 21 20 24 24 C 1.38624 * 119.18681 * 0.54622 * 22 21 20 25 25 C 1.38617 * 118.54153 * 359.72739 * 24 22 21 26 26 C 1.50699 * 120.40227 * 179.97438 * 25 24 22 27 27 N 1.32272 * 119.18937 * 0.02562 * 25 24 22 28 28 N 1.37577 * 125.75972 * 265.11405 * 15 13 3 29 29 H 0.96999 * 125.44332 * 359.97438 * 28 15 13 30 30 H 1.08996 * 109.47336 * 299.99910 * 1 2 3 31 31 H 1.08999 * 109.47030 * 60.00243 * 1 2 3 32 32 H 1.09002 * 109.46930 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47336 * 240.00090 * 2 1 3 34 34 H 1.08999 * 109.47030 * 119.99757 * 2 1 3 35 35 H 1.09002 * 109.46414 * 30.00048 * 4 3 2 36 36 H 1.08997 * 109.47221 * 150.00474 * 4 3 2 37 37 H 0.97003 * 120.00157 * 180.02562 * 8 7 5 38 38 H 1.08005 * 126.41632 * 0.03483 * 16 15 13 39 39 H 1.09002 * 109.47108 * 270.27676 * 23 22 21 40 40 H 1.09000 * 109.46632 * 30.27463 * 23 22 21 41 41 H 1.08998 * 109.46882 * 150.27469 * 23 22 21 42 42 H 1.07997 * 120.72578 * 179.75107 * 24 22 21 43 43 H 1.09000 * 109.47308 * 270.02214 * 26 25 24 44 44 H 1.08999 * 109.47191 * 30.03169 * 26 25 24 45 45 H 1.09013 * 109.46620 * 150.02450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1609 2.1079 -1.2642 5 6 3.5445 1.8851 -1.8182 6 1 4.2475 1.2647 -1.2821 7 6 3.9131 2.4732 -3.0095 8 7 5.1207 2.2791 -3.4928 9 14 2.6970 3.5456 -3.9371 10 1 2.8342 4.9537 -3.4860 11 1 2.9749 3.4631 -5.3936 12 1 1.3151 3.0724 -3.6694 13 6 2.3363 1.9836 1.1630 14 8 2.6519 3.1567 1.1730 15 6 2.3010 1.2141 2.4307 16 6 3.3050 0.4452 2.9191 17 6 2.8371 -0.1241 4.1865 18 8 3.4611 -0.8681 4.9198 19 7 1.5863 0.3383 4.3890 20 6 0.7776 0.0473 5.4787 21 7 -0.4339 0.5782 5.5445 22 6 -1.2322 0.3169 6.5664 23 6 -2.6116 0.9203 6.6304 24 6 -0.7821 -0.5141 7.5805 25 6 0.4933 -1.0481 7.4822 26 6 1.0251 -1.9561 8.5610 27 7 1.2382 -0.7500 6.4306 28 7 1.2436 1.1600 3.3092 29 1 0.3972 1.6209 3.1997 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4211 1.7445 -1.9774 36 1 2.0061 3.1727 -1.0907 37 1 5.3801 2.6932 -4.3308 38 1 4.2692 0.2825 2.4604 39 1 -2.5649 1.8801 7.1448 40 1 -2.9908 1.0681 5.6192 41 1 -3.2769 0.2490 7.1734 42 1 -1.4116 -0.7409 8.4282 43 1 1.5324 -1.3605 9.3199 44 1 0.1985 -2.4999 9.0183 45 1 1.7292 -2.6649 8.1247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362082137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:29 Heat of formation + Delta-G solvation = 76.653542 kcal Electronic energy + Delta-G solvation = -30010.163906 eV Core-core repulsion = 25838.412208 eV Total energy + Delta-G solvation = -4171.751698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14353 -41.02059 -39.25297 -37.15756 -35.72560 -35.23533 -34.73017 -32.80268 -31.60182 -30.52536 -30.20872 -29.56357 -28.24491 -27.85607 -25.44736 -23.52994 -23.12431 -22.43516 -21.46344 -20.86091 -19.62548 -18.52298 -17.86103 -17.02067 -16.92657 -16.60767 -16.17396 -15.99587 -15.88498 -15.10667 -15.06641 -14.48324 -14.27590 -13.97273 -13.91054 -13.68197 -13.58878 -13.48666 -13.25015 -13.14255 -12.97480 -12.62733 -12.56191 -12.54214 -12.38165 -11.99201 -11.63859 -11.52570 -11.09634 -10.94060 -10.78673 -10.72868 -10.58725 -10.33185 -10.23125 -9.72890 -9.58311 -9.44478 -9.11816 -8.66784 -8.06058 -8.02331 -6.15908 -4.16878 0.37279 0.67074 0.93829 1.45740 2.66412 2.90310 2.97446 3.23646 3.29008 3.31511 3.45829 3.48025 3.68747 3.94877 4.16566 4.32196 4.44796 4.63186 4.72450 4.86516 4.95098 5.04351 5.08411 5.16472 5.16703 5.17323 5.30216 5.31896 5.39171 5.52922 5.56761 5.58179 5.62745 5.87443 6.02815 6.04521 6.20186 6.27482 6.50186 6.64231 6.73193 6.75430 7.00662 7.16149 7.47550 7.76050 7.83201 7.99763 8.29306 8.48666 8.87335 9.42183 10.96939 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.002600 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.922630 B =10765.376099 C =11481.905834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.568 5.568 4 C 0.215 3.785 5 C -0.537 4.537 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.571 3.429 14 O -0.507 6.507 15 C 0.180 3.820 16 C -0.294 4.294 17 C 0.545 3.455 18 O -0.481 6.481 19 N -0.332 5.332 20 C 0.568 3.432 21 N -0.556 5.556 22 C 0.211 3.789 23 C -0.106 4.106 24 C -0.262 4.262 25 C 0.215 3.785 26 C -0.107 4.107 27 N -0.514 5.514 28 N -0.477 5.477 29 H 0.450 0.550 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.266 0.734 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.871 -7.375 20.999 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.298 5.298 4 C 0.096 3.904 5 C -0.575 4.575 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.352 3.648 14 O -0.381 6.381 15 C 0.064 3.936 16 C -0.326 4.326 17 C 0.339 3.661 18 O -0.350 6.350 19 N -0.149 5.149 20 C 0.214 3.786 21 N -0.279 5.279 22 C 0.065 3.935 23 C -0.163 4.163 24 C -0.286 4.286 25 C 0.068 3.932 26 C -0.164 4.164 27 N -0.236 5.236 28 N -0.206 5.206 29 H 0.298 0.702 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.199 0.801 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.169 0.831 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.675 -6.962 20.555 27.369 hybrid contribution -1.417 0.665 0.004 1.565 sum -18.093 -6.298 20.559 28.101 Atomic orbital electron populations 1.22188 0.96207 1.01965 1.02121 1.21636 0.93815 0.83098 1.04078 1.47954 1.61143 1.14070 1.06647 1.19842 0.98424 0.92947 0.79225 1.21279 0.97000 1.32350 1.06897 0.90306 1.24834 0.95147 0.95792 0.96983 1.69885 1.18391 1.43975 1.20678 0.86881 0.81832 0.81767 0.79392 1.19805 1.20963 1.19025 1.17305 0.79796 0.86075 0.81670 1.90852 1.47147 1.14596 1.85493 1.21128 0.87333 0.94243 0.90904 1.23078 1.02674 1.08263 0.98556 1.18539 0.78141 0.81794 0.87579 1.90885 1.56899 1.35511 1.51684 1.44746 1.15117 1.42174 1.12904 1.18609 0.85349 0.88961 0.85670 1.67596 1.04305 1.27702 1.28291 1.21497 0.95177 0.89786 0.87046 1.20816 0.89547 1.01415 1.04554 1.22462 0.98917 1.04322 1.02898 1.21658 0.89150 0.91260 0.91154 1.20829 1.02453 0.98148 0.94959 1.67810 1.37016 1.16472 1.02255 1.43638 1.17360 1.46910 1.12731 0.70213 0.93354 0.91803 0.91666 0.88872 0.90700 0.94369 0.94020 0.92380 0.80110 0.89326 0.89712 0.89681 0.83087 0.89263 0.89743 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.10 1.44 6.08 -4.04 -0.02 1.42 16 3 N -0.57 -10.69 2.46 -175.99 -0.43 -11.13 16 4 C 0.22 4.84 4.29 -5.19 -0.02 4.81 16 5 C -0.54 -14.53 9.94 -34.44 -0.34 -14.88 16 6 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 7 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 13 C 0.57 10.92 7.59 -12.10 -0.09 10.82 16 14 O -0.51 -11.63 16.65 5.38 0.09 -11.54 16 15 C 0.18 2.90 5.12 -82.09 -0.42 2.48 16 16 C -0.29 -4.83 10.60 -37.16 -0.39 -5.22 16 17 C 0.54 9.51 8.09 -12.83 -0.10 9.41 16 18 O -0.48 -9.52 16.82 5.21 0.09 -9.43 16 19 N -0.33 -5.17 3.74 -14.27 -0.05 -5.22 16 20 C 0.57 8.33 8.42 -322.40 -2.72 5.61 16 21 N -0.56 -6.81 10.09 -10.08 -0.10 -6.91 16 22 C 0.21 1.91 6.82 -82.26 -0.56 1.34 16 23 C -0.11 -0.53 10.22 36.01 0.37 -0.17 16 24 C -0.26 -2.05 9.53 -39.30 -0.37 -2.43 16 25 C 0.21 2.19 6.82 -82.26 -0.56 1.63 16 26 C -0.11 -0.70 10.22 36.00 0.37 -0.33 16 27 N -0.51 -7.44 8.95 -10.08 -0.09 -7.53 16 28 N -0.48 -6.68 7.05 33.41 0.24 -6.44 16 29 H 0.45 5.34 8.87 -182.72 -1.62 3.72 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 34 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 35 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 36 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.18 2.85 8.06 -52.48 -0.42 2.43 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 42 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 45 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -35.95 390.24 -10.20 -46.15 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.33 Total: 1.22 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: -4.59 Total: 14.91 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.33 Total: -63.02 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.18 Total: -20.97 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.95 -10.20 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362082137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.803 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds