Wall clock time and date at job start Wed Apr 1 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46724 * 2 1 4 4 C 1.46506 * 120.00209 * 274.86638 * 3 2 1 5 5 C 1.50699 * 109.47103 * 270.00558 * 4 3 2 6 6 H 1.08003 * 119.99769 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00214 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00252 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99614 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47254 * 89.99958 * 9 7 5 11 11 H 1.48504 * 109.47024 * 210.00066 * 9 7 5 12 12 H 1.48499 * 109.47125 * 329.99731 * 9 7 5 13 13 C 1.34779 * 119.99898 * 94.87366 * 3 2 1 14 14 O 1.21480 * 119.99478 * 185.12321 * 13 3 2 15 15 C 1.48342 * 119.99903 * 5.12037 * 13 3 2 16 16 C 1.35562 * 125.76463 * 85.09809 * 15 13 3 17 17 C 1.46606 * 107.17391 * 180.02562 * 16 15 13 18 18 O 1.21680 * 126.49416 * 180.02562 * 17 16 15 19 19 N 1.34890 * 107.01809 * 359.72833 * 17 16 15 20 20 C 1.38784 * 125.89856 * 180.28888 * 19 17 16 21 21 N 1.32437 * 119.20657 * 179.89447 * 20 19 17 22 22 C 1.32275 * 120.74549 * 179.71520 * 21 20 19 23 23 C 1.50700 * 120.40695 * 180.27409 * 22 21 20 24 24 C 1.38624 * 119.18681 * 0.54622 * 22 21 20 25 25 C 1.38617 * 118.54153 * 359.72739 * 24 22 21 26 26 C 1.50699 * 120.40227 * 179.97438 * 25 24 22 27 27 N 1.32272 * 119.18937 * 0.02562 * 25 24 22 28 28 N 1.37577 * 125.75972 * 265.11405 * 15 13 3 29 29 H 0.96999 * 125.44332 * 359.97438 * 28 15 13 30 30 H 1.08996 * 109.47336 * 299.99910 * 1 2 3 31 31 H 1.08999 * 109.47030 * 60.00243 * 1 2 3 32 32 H 1.09002 * 109.46930 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47336 * 240.00090 * 2 1 3 34 34 H 1.08999 * 109.47030 * 119.99757 * 2 1 3 35 35 H 1.09002 * 109.46414 * 30.00048 * 4 3 2 36 36 H 1.08997 * 109.47221 * 150.00474 * 4 3 2 37 37 H 0.97003 * 120.00157 * 180.02562 * 8 7 5 38 38 H 1.08005 * 126.41632 * 0.03483 * 16 15 13 39 39 H 1.09002 * 109.47108 * 270.27676 * 23 22 21 40 40 H 1.09000 * 109.46632 * 30.27463 * 23 22 21 41 41 H 1.08998 * 109.46882 * 150.27469 * 23 22 21 42 42 H 1.07997 * 120.72578 * 179.75107 * 24 22 21 43 43 H 1.09000 * 109.47308 * 270.02214 * 26 25 24 44 44 H 1.08999 * 109.47191 * 30.03169 * 26 25 24 45 45 H 1.09013 * 109.46620 * 150.02450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1609 2.1079 -1.2642 5 6 3.5445 1.8851 -1.8182 6 1 4.2475 1.2647 -1.2821 7 6 3.9131 2.4732 -3.0095 8 7 5.1207 2.2791 -3.4928 9 14 2.6970 3.5456 -3.9371 10 1 2.8342 4.9537 -3.4860 11 1 2.9749 3.4631 -5.3936 12 1 1.3151 3.0724 -3.6694 13 6 2.3363 1.9836 1.1630 14 8 2.6519 3.1567 1.1730 15 6 2.3010 1.2141 2.4307 16 6 3.3050 0.4452 2.9191 17 6 2.8371 -0.1241 4.1865 18 8 3.4611 -0.8681 4.9198 19 7 1.5863 0.3383 4.3890 20 6 0.7776 0.0473 5.4787 21 7 -0.4339 0.5782 5.5445 22 6 -1.2322 0.3169 6.5664 23 6 -2.6116 0.9203 6.6304 24 6 -0.7821 -0.5141 7.5805 25 6 0.4933 -1.0481 7.4822 26 6 1.0251 -1.9561 8.5610 27 7 1.2382 -0.7500 6.4306 28 7 1.2436 1.1600 3.3092 29 1 0.3972 1.6209 3.1997 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4211 1.7445 -1.9774 36 1 2.0061 3.1727 -1.0907 37 1 5.3801 2.6932 -4.3308 38 1 4.2692 0.2825 2.4604 39 1 -2.5649 1.8801 7.1448 40 1 -2.9908 1.0681 5.6192 41 1 -3.2769 0.2490 7.1734 42 1 -1.4116 -0.7409 8.4282 43 1 1.5324 -1.3605 9.3199 44 1 0.1985 -2.4999 9.0183 45 1 1.7292 -2.6649 8.1247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362082137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:28 Heat of formation + Delta-G solvation = 53.316252 kcal Electronic energy + Delta-G solvation = -30011.175887 eV Core-core repulsion = 25838.412208 eV Total energy + Delta-G solvation = -4172.763679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.28261 -42.00621 -40.77611 -38.51362 -37.28745 -35.98075 -35.71184 -34.79904 -32.67846 -31.92950 -31.33334 -30.37109 -29.91047 -28.42743 -26.77955 -24.86201 -24.50117 -23.48221 -22.77066 -21.90618 -20.91062 -19.80198 -19.09885 -18.77304 -18.26964 -17.82434 -17.48017 -17.35139 -16.63962 -16.52788 -16.28001 -16.04411 -15.46976 -15.16935 -14.90452 -14.81799 -14.71853 -14.44129 -14.38247 -14.12585 -14.06133 -13.87769 -13.59312 -13.49218 -13.36184 -13.20926 -13.01869 -12.66549 -12.44944 -12.35013 -12.13625 -12.02507 -11.77735 -11.71111 -11.59345 -11.51538 -11.10252 -10.79838 -10.39838 -10.09252 -9.68556 -9.27794 -8.30168 -6.36990 -0.58095 -0.23283 -0.06802 0.25008 1.20770 1.37814 1.42080 1.49259 1.61182 1.69429 2.22770 2.34583 2.56801 2.85187 2.96346 3.05895 3.27819 3.39288 3.67284 3.99163 4.01476 4.09495 4.15287 4.29718 4.38334 4.50566 4.52147 4.66043 4.69607 4.73304 4.74962 4.79415 4.83022 4.88602 4.90946 4.94639 4.94904 5.17751 5.29589 5.39956 5.41022 5.45061 5.51141 5.88224 6.05047 6.19714 6.30690 6.66132 6.70210 6.85767 6.89339 7.27139 8.86308 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.002600 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.922630 B =10765.376099 C =11481.905834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 N -0.567 5.567 4 C 0.223 3.777 5 C -0.542 4.542 6 H 0.034 0.966 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.231 1.231 13 C 0.575 3.425 14 O -0.550 6.550 15 C 0.193 3.807 16 C -0.301 4.301 17 C 0.539 3.461 18 O -0.517 6.517 19 N -0.331 5.331 20 C 0.536 3.464 21 N -0.563 5.563 22 C 0.196 3.804 23 C -0.101 4.101 24 C -0.235 4.235 25 C 0.192 3.808 26 C -0.103 4.103 27 N -0.552 5.552 28 N -0.455 5.455 29 H 0.461 0.539 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.180 0.820 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.199 0.801 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.470 -7.585 22.687 32.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.031 4.031 3 N -0.297 5.297 4 C 0.102 3.898 5 C -0.580 4.580 6 H 0.052 0.948 7 C -0.185 4.185 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.153 1.153 13 C 0.357 3.643 14 O -0.427 6.427 15 C 0.074 3.926 16 C -0.334 4.334 17 C 0.335 3.665 18 O -0.390 6.390 19 N -0.148 5.148 20 C 0.182 3.818 21 N -0.286 5.286 22 C 0.051 3.949 23 C -0.158 4.158 24 C -0.258 4.258 25 C 0.047 3.953 26 C -0.160 4.160 27 N -0.275 5.275 28 N -0.184 5.184 29 H 0.311 0.689 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.197 0.803 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.216 0.784 43 H 0.117 0.883 44 H 0.140 0.860 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.386 -7.216 22.307 31.734 hybrid contribution -0.045 0.655 -0.336 0.737 sum -21.431 -6.561 21.971 31.386 Atomic orbital electron populations 1.22130 0.93235 1.03752 1.02516 1.21901 0.96165 0.80733 1.04251 1.47974 1.60750 1.15406 1.05548 1.19578 0.96134 0.93123 0.80973 1.21525 0.98556 1.31249 1.06691 0.94754 1.25824 0.97155 0.97351 0.98167 1.70049 1.20948 1.45793 1.21519 0.85766 0.80781 0.79106 0.77636 1.20080 1.20540 1.15342 1.17503 0.78719 0.85616 0.82466 1.90825 1.49044 1.16564 1.86309 1.20467 0.88000 0.93968 0.90166 1.23072 1.02911 1.08717 0.98700 1.18497 0.78764 0.81797 0.87475 1.90845 1.58047 1.37340 1.52732 1.44622 1.14955 1.41860 1.13380 1.18693 0.86367 0.90832 0.85907 1.67641 1.03575 1.27636 1.29768 1.22355 0.96275 0.89841 0.86425 1.20965 0.87336 1.02454 1.05066 1.22978 0.97947 1.01563 1.03266 1.22385 0.90160 0.91976 0.90782 1.20956 1.03494 0.97523 0.94041 1.67755 1.38964 1.17244 1.03541 1.43493 1.17039 1.46031 1.11862 0.68860 0.92551 0.91791 0.89180 0.89425 0.89933 0.91748 0.94841 0.92272 0.80274 0.88106 0.90088 0.86539 0.78377 0.88268 0.86046 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.64 16 2 C 0.09 2.63 6.08 86.38 0.53 3.16 16 3 N -0.57 -21.35 2.46 -829.00 -2.04 -23.39 16 4 C 0.22 9.91 4.29 85.63 0.37 10.28 16 5 C -0.54 -30.15 9.94 25.60 0.25 -29.89 16 6 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 7 C 0.01 0.77 5.47 84.65 0.46 1.23 16 8 N -0.94 -58.13 13.96 21.44 0.30 -57.83 16 9 Si 0.94 41.95 27.47 68.60 1.88 43.84 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 13 C 0.57 22.34 7.59 86.93 0.66 23.00 16 14 O -0.55 -25.87 16.65 -3.65 -0.06 -25.93 16 15 C 0.19 6.29 5.12 40.31 0.21 6.50 16 16 C -0.30 -10.38 10.60 23.84 0.25 -10.13 16 17 C 0.54 19.64 8.09 86.41 0.70 20.34 16 18 O -0.52 -21.58 16.82 -4.28 -0.07 -21.65 16 19 N -0.33 -10.46 3.74 -317.23 -1.18 -11.64 16 20 C 0.54 15.62 8.42 261.34 2.20 17.82 16 21 N -0.56 -12.96 10.09 -185.80 -1.87 -14.83 16 22 C 0.20 2.94 6.82 42.58 0.29 3.23 16 23 C -0.10 -0.60 10.22 71.24 0.73 0.13 16 24 C -0.24 -2.79 9.53 22.45 0.21 -2.58 16 25 C 0.19 3.57 6.82 42.58 0.29 3.86 16 26 C -0.10 -1.14 10.22 71.24 0.73 -0.41 16 27 N -0.55 -16.00 8.95 -185.81 -1.66 -17.66 16 28 N -0.46 -12.64 7.05 -48.22 -0.34 -12.98 16 29 H 0.46 10.52 8.87 -213.42 -1.89 8.62 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 2.63 8.11 -2.39 -0.02 2.62 16 34 H 0.08 2.26 6.30 -2.39 -0.02 2.25 16 35 H 0.06 2.56 7.13 -2.39 -0.02 2.54 16 36 H 0.03 1.57 6.79 -2.39 -0.02 1.55 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.18 6.08 8.06 -2.91 -0.02 6.06 16 39 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.12 -0.01 8.09 -2.39 -0.02 -0.03 16 42 H 0.20 0.39 8.06 -2.91 -0.02 0.36 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.12 0.39 8.10 -2.39 -0.02 0.38 16 45 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -84.20 390.24 2.66 -81.54 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.91 Total: 16.66 kcal Atomic # 6 Polarization: 35.27 SS G_CDS: 8.62 Total: 43.89 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -6.80 Total: -138.35 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.13 Total: -47.58 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Total: -84.20 2.66 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362082137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.859 kcal (2) G-P(sol) polarization free energy of solvation -84.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds