Wall clock time and date at job start Wed Apr 1 2020 03:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45202 * 109.46857 * 2 1 4 4 C 1.34638 * 116.99779 * 180.02562 * 3 2 1 5 5 O 1.21393 * 119.99875 * 359.97438 * 4 3 2 6 6 C 1.48387 * 119.99877 * 180.27078 * 4 3 2 7 7 C 1.39550 * 120.50494 * 179.72229 * 6 4 3 8 8 C 1.38801 * 118.42117 * 180.02562 * 7 6 4 9 9 C 1.50697 * 120.37426 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47052 * 274.99908 * 9 8 7 11 11 C 1.52998 * 109.47274 * 35.00091 * 9 8 7 12 12 N 1.32117 * 119.24643 * 0.02562 * 8 7 6 13 13 C 1.32603 * 120.96707 * 0.02562 * 12 8 7 14 14 N 1.38443 * 119.13841 * 180.02562 * 13 12 8 15 15 C 1.40587 * 120.00342 * 179.97438 * 14 13 12 16 16 C 1.40662 * 126.07672 * 359.68631 * 15 14 13 17 17 N 1.30914 * 108.39474 * 179.85413 * 16 15 14 18 18 N 1.40072 * 108.40474 * 0.40597 * 17 16 15 19 19 C 1.37310 * 126.07626 * 179.70249 * 18 17 16 20 20 H 1.07995 * 120.00267 * 180.02562 * 19 18 17 21 21 C 1.38986 * 119.99734 * 0.04801 * 19 18 17 22 22 N 1.31295 * 119.99766 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47166 * 59.99786 * 23 21 19 25 25 H 1.48502 * 109.47033 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47349 * 299.99650 * 23 21 19 27 27 C 1.35665 * 126.08573 * 179.97438 * 15 14 13 28 28 N 1.32306 * 121.72190 * 359.70849 * 13 12 8 29 29 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47272 * 300.00551 * 1 2 3 31 31 H 1.08996 * 109.46984 * 60.00499 * 1 2 3 32 32 H 1.08992 * 109.47034 * 239.99826 * 2 1 3 33 33 H 1.09004 * 109.46829 * 119.99227 * 2 1 3 34 34 H 1.07996 * 120.79181 * 359.97438 * 7 6 4 35 35 H 1.09001 * 109.46742 * 155.00312 * 9 8 7 36 36 H 1.08995 * 109.47001 * 60.00123 * 10 9 8 37 37 H 1.09001 * 109.46993 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47256 * 299.99969 * 10 9 8 39 39 H 1.08999 * 109.46683 * 299.99727 * 11 9 8 40 40 H 1.08997 * 109.47129 * 59.99838 * 11 9 8 41 41 H 1.09006 * 109.47186 * 179.97438 * 11 9 8 42 42 H 0.97005 * 120.00077 * 359.97438 * 14 13 12 43 43 H 1.07997 * 125.80715 * 0.02562 * 16 15 14 44 44 H 0.97008 * 119.99871 * 180.02562 * 22 21 19 45 45 H 1.07998 * 126.24384 * 359.95211 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0883 0.5827 -0.0005 6 6 3.9159 2.9166 0.0055 7 6 5.2977 3.1117 0.0108 8 6 5.7812 4.4127 0.0169 9 6 7.2653 4.6741 0.0222 10 6 7.7852 4.6336 1.4607 11 6 7.9750 3.6018 -0.8069 12 7 4.9255 5.4193 0.0180 13 6 3.6173 5.2028 0.0139 14 7 2.7547 6.2857 0.0146 15 6 1.3644 6.0770 0.0098 16 6 0.7141 4.8298 -0.0024 17 7 -0.5784 5.0379 -0.0003 18 7 -0.8038 6.4204 0.0037 19 6 -2.0292 7.0399 0.0011 20 1 -2.0893 8.1181 0.0043 21 6 -3.1924 6.2791 -0.0052 22 7 -3.1194 4.9682 -0.0092 23 14 -4.8595 7.1218 -0.0081 24 1 -4.9814 7.9738 -1.2183 25 1 -5.9328 6.0956 -0.0156 26 1 -4.9896 7.9659 1.2067 27 6 0.4115 7.0426 0.0104 28 7 3.1148 3.9789 0.0028 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 5.9748 2.2703 0.0111 35 1 7.4628 5.6560 -0.4079 36 1 7.5876 3.6518 1.8909 37 1 8.8586 4.8231 1.4646 38 1 7.2796 5.3975 2.0514 39 1 7.7775 2.6201 -0.3766 40 1 7.6047 3.6307 -1.8316 41 1 9.0485 3.7912 -0.8034 42 1 3.1096 7.1884 0.0185 43 1 1.1985 3.8646 -0.0091 44 1 -3.9312 4.4372 -0.0139 45 1 0.5830 8.1089 0.0154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363735206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:39 Heat of formation + Delta-G solvation = 57.935979 kcal Electronic energy + Delta-G solvation = -30001.872128 eV Core-core repulsion = 25829.308776 eV Total energy + Delta-G solvation = -4172.563352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.20146 -40.03661 -39.41197 -36.70840 -36.52508 -34.94386 -33.48708 -32.86792 -31.47986 -30.29751 -30.15490 -27.59708 -27.27615 -25.94794 -24.98989 -23.95362 -22.86729 -21.71639 -20.66318 -20.37760 -19.50230 -18.21002 -17.87306 -16.94090 -16.78627 -16.53456 -15.84764 -15.39461 -15.27732 -15.14271 -14.92393 -14.36783 -14.27509 -13.96366 -13.76407 -13.47456 -13.36416 -13.11114 -12.92485 -12.63620 -12.35665 -11.84699 -11.77433 -11.63992 -11.54096 -11.47710 -11.44452 -11.31819 -11.21999 -11.00768 -10.97662 -10.77532 -10.56780 -10.44092 -10.40081 -10.32297 -9.41650 -8.87605 -8.76799 -8.61467 -8.01987 -6.55756 -6.53651 -4.20156 0.61542 1.28970 2.52656 2.55039 2.97352 3.03276 3.07833 3.16316 3.55592 3.83640 4.00368 4.03116 4.37063 4.48022 4.63311 4.83615 4.92791 4.96456 5.02451 5.03700 5.04629 5.07507 5.32337 5.32967 5.40128 5.46496 5.52117 5.64329 5.66728 5.78135 5.89052 5.97714 6.05157 6.07336 6.17942 6.27304 6.28254 6.46926 6.48934 6.79552 6.95020 7.15024 7.20279 7.48628 7.76669 7.83702 8.01406 8.28869 8.57234 8.76674 9.38201 9.69124 10.39885 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.003237 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.055291 B = 8648.578050 C =10887.675709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.323 6.323 4 C 0.528 3.472 5 O -0.499 6.499 6 C 0.190 3.810 7 C -0.248 4.248 8 C 0.230 3.770 9 C -0.045 4.045 10 C -0.141 4.141 11 C -0.148 4.148 12 N -0.557 5.557 13 C 0.564 3.436 14 N -0.577 5.577 15 C -0.058 4.058 16 C -0.029 4.029 17 N -0.259 5.259 18 N -0.143 5.143 19 C -0.322 4.322 20 H 0.115 0.885 21 C 0.047 3.953 22 N -0.769 5.769 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.082 4.082 28 N -0.510 5.510 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.193 0.807 44 H 0.274 0.726 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.991 -4.567 0.249 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.237 6.237 4 C 0.370 3.630 5 O -0.386 6.386 6 C 0.041 3.959 7 C -0.276 4.276 8 C 0.078 3.922 9 C -0.064 4.064 10 C -0.199 4.199 11 C -0.206 4.206 12 N -0.281 5.281 13 C 0.208 3.792 14 N -0.201 5.201 15 C -0.164 4.164 16 C -0.205 4.205 17 N -0.089 5.089 18 N 0.090 4.910 19 C -0.454 4.454 20 H 0.132 0.868 21 C -0.170 4.170 22 N -0.395 5.395 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 C -0.234 4.234 28 N -0.237 5.237 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.252 0.748 43 H 0.209 0.791 44 H 0.085 0.915 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.902 -4.859 0.239 13.788 hybrid contribution 0.694 0.455 -0.005 0.830 sum 13.596 -4.404 0.234 14.293 Atomic orbital electron populations 1.21808 0.91904 1.02551 1.04856 1.23139 0.96089 0.79619 1.02210 1.86764 1.22290 1.32293 1.82401 1.20800 0.81381 0.88172 0.72676 1.90806 1.60938 1.41148 1.45690 1.20128 0.90052 0.90512 0.95255 1.22122 0.94886 0.99412 1.11210 1.21246 0.95586 0.87416 0.87985 1.20093 0.87169 1.01341 0.97780 1.21798 1.01044 1.02624 0.94447 1.21924 1.00208 0.98534 0.99922 1.67549 1.01927 1.36674 1.21951 1.18989 0.84636 0.85748 0.89872 1.40678 1.02657 1.04702 1.72031 1.17238 0.80031 0.94746 1.24400 1.24612 0.91016 0.98087 1.06833 1.78274 1.13725 0.91265 1.25590 1.44574 1.03351 1.03973 1.39136 1.19810 0.79800 0.92431 1.53378 0.86763 1.25612 1.00421 0.95449 0.95532 1.70210 1.29682 1.04336 1.35266 0.85917 0.79868 0.79037 0.79467 1.19198 1.20146 1.19195 1.21165 0.85502 0.96588 1.20111 1.68170 1.37765 0.97844 1.19878 0.90478 0.90849 0.90841 0.91247 0.91253 0.83017 0.88709 0.92188 0.91609 0.92113 0.91711 0.92182 0.91631 0.74841 0.79064 0.91491 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.29 37.16 0.38 -1.55 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.32 -5.53 9.68 -40.32 -0.39 -5.92 16 4 C 0.53 8.86 7.97 34.91 0.28 9.13 16 5 O -0.50 -8.29 16.21 -19.18 -0.31 -8.60 16 6 C 0.19 3.24 6.79 -82.67 -0.56 2.68 16 7 C -0.25 -3.53 8.79 -38.88 -0.34 -3.87 16 8 C 0.23 3.13 5.82 -82.26 -0.48 2.66 16 9 C -0.04 -0.43 3.27 -91.77 -0.30 -0.73 16 10 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 11 C -0.15 -1.17 8.64 37.16 0.32 -0.84 16 12 N -0.56 -8.98 10.38 -10.15 -0.11 -9.09 16 13 C 0.56 10.56 8.40 -322.85 -2.71 7.85 16 14 N -0.58 -11.01 5.61 -11.79 -0.07 -11.08 16 15 C -0.06 -1.33 6.92 -83.84 -0.58 -1.91 16 16 C -0.03 -0.73 10.81 -17.03 -0.18 -0.92 16 17 N -0.26 -7.33 10.40 30.80 0.32 -7.01 16 18 N -0.14 -3.89 3.74 -11.41 -0.04 -3.94 16 19 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 20 H 0.11 2.68 7.83 -52.49 -0.41 2.27 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.00 11.81 55.49 0.66 -20.35 16 23 Si 0.93 18.74 29.55 -169.99 -5.02 13.72 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 C -0.08 -1.93 11.49 -16.38 -0.19 -2.12 16 28 N -0.51 -9.95 6.26 -10.49 -0.07 -10.02 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.15 1.84 6.11 -52.49 -0.32 1.52 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.41 6.68 8.94 -40.82 -0.36 6.32 16 43 H 0.19 4.72 5.16 -52.49 -0.27 4.45 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.15 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.15 385.80 -9.17 -41.33 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.92 Total: 12.04 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -4.04 Total: 3.10 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.70 Total: -61.47 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.70 Total: -14.53 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.15 -9.17 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363735206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.261 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds