Wall clock time and date at job start Wed Apr 1 2020 03:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45202 * 109.46857 * 2 1 4 4 C 1.34638 * 116.99779 * 180.02562 * 3 2 1 5 5 O 1.21393 * 119.99875 * 359.97438 * 4 3 2 6 6 C 1.48387 * 119.99877 * 180.27078 * 4 3 2 7 7 C 1.39550 * 120.50494 * 179.72229 * 6 4 3 8 8 C 1.38801 * 118.42117 * 180.02562 * 7 6 4 9 9 C 1.50697 * 120.37426 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47052 * 274.99908 * 9 8 7 11 11 C 1.52998 * 109.47274 * 35.00091 * 9 8 7 12 12 N 1.32117 * 119.24643 * 0.02562 * 8 7 6 13 13 C 1.32603 * 120.96707 * 0.02562 * 12 8 7 14 14 N 1.38443 * 119.13841 * 180.02562 * 13 12 8 15 15 C 1.40587 * 120.00342 * 179.97438 * 14 13 12 16 16 C 1.40662 * 126.07672 * 359.68631 * 15 14 13 17 17 N 1.30914 * 108.39474 * 179.85413 * 16 15 14 18 18 N 1.40072 * 108.40474 * 0.40597 * 17 16 15 19 19 C 1.37310 * 126.07626 * 179.70249 * 18 17 16 20 20 H 1.07995 * 120.00267 * 180.02562 * 19 18 17 21 21 C 1.38986 * 119.99734 * 0.04801 * 19 18 17 22 22 N 1.31295 * 119.99766 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47166 * 59.99786 * 23 21 19 25 25 H 1.48502 * 109.47033 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47349 * 299.99650 * 23 21 19 27 27 C 1.35665 * 126.08573 * 179.97438 * 15 14 13 28 28 N 1.32306 * 121.72190 * 359.70849 * 13 12 8 29 29 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47272 * 300.00551 * 1 2 3 31 31 H 1.08996 * 109.46984 * 60.00499 * 1 2 3 32 32 H 1.08992 * 109.47034 * 239.99826 * 2 1 3 33 33 H 1.09004 * 109.46829 * 119.99227 * 2 1 3 34 34 H 1.07996 * 120.79181 * 359.97438 * 7 6 4 35 35 H 1.09001 * 109.46742 * 155.00312 * 9 8 7 36 36 H 1.08995 * 109.47001 * 60.00123 * 10 9 8 37 37 H 1.09001 * 109.46993 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47256 * 299.99969 * 10 9 8 39 39 H 1.08999 * 109.46683 * 299.99727 * 11 9 8 40 40 H 1.08997 * 109.47129 * 59.99838 * 11 9 8 41 41 H 1.09006 * 109.47186 * 179.97438 * 11 9 8 42 42 H 0.97005 * 120.00077 * 359.97438 * 14 13 12 43 43 H 1.07997 * 125.80715 * 0.02562 * 16 15 14 44 44 H 0.97008 * 119.99871 * 180.02562 * 22 21 19 45 45 H 1.07998 * 126.24384 * 359.95211 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0883 0.5827 -0.0005 6 6 3.9159 2.9166 0.0055 7 6 5.2977 3.1117 0.0108 8 6 5.7812 4.4127 0.0169 9 6 7.2653 4.6741 0.0222 10 6 7.7852 4.6336 1.4607 11 6 7.9750 3.6018 -0.8069 12 7 4.9255 5.4193 0.0180 13 6 3.6173 5.2028 0.0139 14 7 2.7547 6.2857 0.0146 15 6 1.3644 6.0770 0.0098 16 6 0.7141 4.8298 -0.0024 17 7 -0.5784 5.0379 -0.0003 18 7 -0.8038 6.4204 0.0037 19 6 -2.0292 7.0399 0.0011 20 1 -2.0893 8.1181 0.0043 21 6 -3.1924 6.2791 -0.0052 22 7 -3.1194 4.9682 -0.0092 23 14 -4.8595 7.1218 -0.0081 24 1 -4.9814 7.9738 -1.2183 25 1 -5.9328 6.0956 -0.0156 26 1 -4.9896 7.9659 1.2067 27 6 0.4115 7.0426 0.0104 28 7 3.1148 3.9789 0.0028 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 5.9748 2.2703 0.0111 35 1 7.4628 5.6560 -0.4079 36 1 7.5876 3.6518 1.8909 37 1 8.8586 4.8231 1.4646 38 1 7.2796 5.3975 2.0514 39 1 7.7775 2.6201 -0.3766 40 1 7.6047 3.6307 -1.8316 41 1 9.0485 3.7912 -0.8034 42 1 3.1096 7.1884 0.0185 43 1 1.1985 3.8646 -0.0091 44 1 -3.9312 4.4372 -0.0139 45 1 0.5830 8.1089 0.0154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363735206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:37 Heat of formation + Delta-G solvation = 41.227508 kcal Electronic energy + Delta-G solvation = -30002.596662 eV Core-core repulsion = 25829.308776 eV Total energy + Delta-G solvation = -4173.287886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.52833 -41.45642 -41.13680 -37.97031 -37.69518 -36.32271 -35.21866 -34.19706 -32.59488 -32.12376 -31.59930 -29.26603 -28.04630 -27.25046 -26.68589 -25.21434 -24.07867 -23.07100 -22.24712 -21.78115 -21.07587 -19.56788 -19.53654 -18.21347 -18.15043 -17.78192 -17.49015 -17.06020 -16.53908 -16.48791 -16.44414 -15.54818 -15.38868 -15.31535 -15.12744 -14.94359 -14.65204 -14.59103 -14.03286 -13.63951 -13.46546 -13.23703 -13.10177 -13.01961 -12.90709 -12.82298 -12.56150 -12.50982 -12.47498 -12.22248 -12.12822 -12.09999 -12.08042 -11.65929 -11.57720 -11.48376 -11.14842 -10.74834 -10.19972 -10.16054 -9.98044 -8.42941 -8.28034 -6.16991 -0.69362 0.02508 1.21686 1.32295 1.36011 1.40363 1.55725 1.73224 1.80357 2.17788 2.41718 2.73963 2.83752 2.95001 3.12471 3.30463 3.57784 3.82350 3.98398 4.00102 4.05498 4.16045 4.25510 4.29572 4.38664 4.48620 4.51613 4.67043 4.76801 4.86609 4.88310 4.91869 4.99794 5.02388 5.03548 5.09119 5.17368 5.24096 5.33029 5.34209 5.40586 5.42515 5.78669 5.88167 6.00704 6.37219 6.47479 6.55138 6.80892 7.25429 7.50475 7.75401 8.55817 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.003237 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.055291 B = 8648.578050 C =10887.675709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.348 6.348 4 C 0.528 3.472 5 O -0.500 6.500 6 C 0.166 3.834 7 C -0.224 4.224 8 C 0.230 3.770 9 C -0.041 4.041 10 C -0.138 4.138 11 C -0.146 4.146 12 N -0.552 5.552 13 C 0.553 3.447 14 N -0.582 5.582 15 C -0.040 4.040 16 C -0.048 4.048 17 N -0.304 5.304 18 N -0.170 5.170 19 C -0.355 4.355 20 H 0.135 0.865 21 C -0.004 4.004 22 N -0.819 5.819 23 Si 1.015 2.985 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.256 1.256 27 C -0.084 4.084 28 N -0.546 5.546 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.428 0.572 43 H 0.194 0.806 44 H 0.276 0.724 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.271 -4.082 0.268 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.263 6.263 4 C 0.371 3.629 5 O -0.388 6.388 6 C 0.019 3.981 7 C -0.251 4.251 8 C 0.078 3.922 9 C -0.061 4.061 10 C -0.196 4.196 11 C -0.204 4.204 12 N -0.275 5.275 13 C 0.196 3.804 14 N -0.209 5.209 15 C -0.147 4.147 16 C -0.225 4.225 17 N -0.135 5.135 18 N 0.061 4.939 19 C -0.486 4.486 20 H 0.153 0.847 21 C -0.216 4.216 22 N -0.447 5.447 23 Si 0.835 3.165 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.180 1.180 27 C -0.235 4.235 28 N -0.272 5.272 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.196 0.804 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.267 0.733 43 H 0.210 0.790 44 H 0.085 0.915 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 15.258 -4.400 0.258 15.881 hybrid contribution 0.325 0.193 -0.008 0.378 sum 15.583 -4.207 0.250 16.142 Atomic orbital electron populations 1.21819 0.91636 1.04251 1.02901 1.23425 0.96292 0.78269 1.03622 1.86761 1.22632 1.34575 1.82332 1.20796 0.81345 0.88194 0.72600 1.90785 1.60844 1.41063 1.46068 1.20412 0.91147 0.90154 0.96363 1.22501 0.93973 1.00633 1.07987 1.22116 0.97368 0.86719 0.85949 1.20289 0.84065 1.02508 0.99200 1.21810 1.02572 1.02269 0.92992 1.21946 1.01536 0.97843 0.99055 1.67669 1.00899 1.37428 1.21518 1.19145 0.85522 0.85494 0.90193 1.40458 1.01076 1.05637 1.73733 1.17240 0.81913 0.93569 1.21963 1.24784 0.90802 0.99288 1.07633 1.78162 1.15263 0.92888 1.27162 1.44826 1.04572 1.03731 1.40745 1.20488 0.80204 0.93655 1.54294 0.84733 1.26781 1.04535 0.95945 0.94292 1.70386 1.30820 1.06301 1.37215 0.84707 0.73960 0.77801 0.80075 1.17998 1.20108 1.17989 1.21807 0.84658 0.98311 1.18715 1.68011 1.39301 0.98692 1.21238 0.86903 0.92759 0.92747 0.89764 0.89770 0.80448 0.88069 0.92098 0.88880 0.93441 0.91381 0.92753 0.89066 0.73305 0.78963 0.91454 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 10.29 71.98 0.74 -3.11 16 2 C 0.06 1.51 6.19 71.98 0.45 1.96 16 3 O -0.35 -12.34 9.68 -55.46 -0.54 -12.88 16 4 C 0.53 17.82 7.97 70.53 0.56 18.38 16 5 O -0.50 -16.15 16.21 20.18 0.33 -15.83 16 6 C 0.17 5.65 6.79 41.98 0.29 5.94 16 7 C -0.22 -5.97 8.79 22.72 0.20 -5.78 16 8 C 0.23 5.82 5.82 42.65 0.25 6.07 16 9 C -0.04 -0.67 3.27 -11.54 -0.04 -0.71 16 10 C -0.14 -1.88 9.18 71.98 0.66 -1.22 16 11 C -0.15 -1.75 8.64 71.98 0.62 -1.12 16 12 N -0.55 -17.13 10.38 -186.02 -1.93 -19.06 16 13 C 0.55 20.70 8.40 261.50 2.20 22.90 16 14 N -0.58 -22.24 5.61 -191.22 -1.07 -23.31 16 15 C -0.04 -1.87 6.92 37.73 0.26 -1.61 16 16 C -0.05 -2.59 10.81 85.42 0.92 -1.67 16 17 N -0.30 -18.11 10.40 -56.46 -0.59 -18.70 16 18 N -0.17 -9.53 3.74 -190.00 -0.71 -10.24 16 19 C -0.36 -19.03 10.25 84.01 0.86 -18.17 16 20 H 0.14 6.32 7.83 -2.91 -0.02 6.29 16 21 C 0.00 -0.19 5.50 84.95 0.47 0.28 16 22 N -0.82 -46.81 11.81 21.66 0.26 -46.56 16 23 Si 1.02 38.82 29.55 68.60 2.03 40.85 16 24 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 25 H -0.28 -10.38 7.11 99.48 0.71 -9.68 16 26 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 27 C -0.08 -4.00 11.49 83.36 0.96 -3.04 16 28 N -0.55 -21.72 6.26 -187.09 -1.17 -22.90 16 29 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.18 3.79 6.11 -2.91 -0.02 3.77 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.78 6.57 -2.39 -0.02 0.76 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.43 13.53 8.94 -92.70 -0.83 12.70 16 43 H 0.19 10.07 5.16 -2.91 -0.02 10.06 16 44 H 0.28 14.49 8.31 -92.70 -0.77 13.72 16 45 H 0.18 6.96 8.06 -2.91 -0.02 6.94 16 Total: -1.00 -73.78 385.80 6.21 -67.57 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: 0.21 Total: 41.95 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 9.39 Total: 19.10 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -5.22 Total: -140.76 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.21 Total: -28.70 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -73.78 6.21 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363735206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.797 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds