Wall clock time and date at job start Wed Apr 1 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 113.99795 * 2 1 4 4 C 1.53001 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46539 * 304.99642 * 4 3 2 6 6 C 1.52999 * 109.47541 * 64.99557 * 4 3 2 7 7 N 1.46503 * 109.46851 * 184.99973 * 4 3 2 8 8 C 1.34957 * 125.97532 * 274.99596 * 7 4 3 9 9 C 1.35244 * 107.86057 * 179.97438 * 8 7 4 10 10 C 1.40406 * 107.86435 * 0.02562 * 9 8 7 11 11 N 1.40188 * 125.97052 * 180.26167 * 10 9 8 12 12 C 1.34774 * 119.99903 * 359.71623 * 11 10 9 13 13 O 1.21592 * 120.00227 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00215 * 179.97438 * 12 11 10 15 15 C 1.39447 * 120.00413 * 175.14337 * 14 12 11 16 16 C 1.38643 * 119.64961 * 185.22601 * 15 14 12 17 17 C 1.40824 * 118.67383 * 180.02562 * 16 15 14 18 18 C 1.41545 * 120.99804 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00182 * 149.48980 * 18 17 16 20 20 C 1.40037 * 119.99915 * 329.49521 * 18 17 16 21 21 N 1.30742 * 119.99930 * 167.68639 * 20 18 17 22 22 Si 1.86800 * 119.99884 * 347.68120 * 20 18 17 23 23 H 1.48495 * 109.46998 * 92.44501 * 22 20 18 24 24 H 1.48498 * 109.46974 * 212.44537 * 22 20 18 25 25 H 1.48495 * 109.47183 * 332.44624 * 22 20 18 26 26 C 1.41159 * 118.00719 * 0.02562 * 17 16 15 27 27 C 1.36595 * 119.12699 * 0.02562 * 26 17 16 28 28 N 1.32068 * 121.25932 * 359.72388 * 27 26 17 29 29 N 1.31205 * 108.05726 * 0.02562 * 10 9 8 30 30 H 1.08996 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46829 * 300.00443 * 1 2 3 32 32 H 1.09001 * 109.46621 * 60.00384 * 1 2 3 33 33 H 1.08993 * 109.47192 * 59.99954 * 3 2 1 34 34 H 1.08999 * 109.46605 * 299.99325 * 3 2 1 35 35 H 1.08997 * 109.46864 * 179.97438 * 6 4 3 36 36 H 1.08994 * 109.47377 * 300.00128 * 6 4 3 37 37 H 1.09008 * 109.46732 * 60.00214 * 6 4 3 38 38 H 1.08005 * 126.07137 * 359.96015 * 8 7 4 39 39 H 1.08003 * 126.06900 * 180.02562 * 9 8 7 40 40 H 0.96995 * 119.99671 * 179.71664 * 11 10 9 41 41 H 0.97003 * 119.99765 * 355.15120 * 14 12 11 42 42 H 1.07998 * 120.66576 * 0.02765 * 16 15 14 43 43 H 0.97003 * 119.99805 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.44117 * 179.97438 * 26 17 16 45 45 H 1.08001 * 119.37143 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 3.9953 0.5368 -1.3082 7 7 4.1310 2.5178 0.1197 8 6 4.3734 3.3725 -0.8962 9 6 4.9261 4.4911 -0.3743 10 6 5.0264 4.3141 1.0150 11 7 5.5416 5.2443 1.9285 12 6 6.0026 6.4331 1.4920 13 8 5.9714 6.6990 0.3059 14 7 6.4974 7.3277 2.3702 15 6 7.0670 8.5146 1.9105 16 6 7.6708 9.3793 2.8105 17 6 8.2389 10.5724 2.3239 18 6 8.8671 11.4906 3.1990 19 1 9.6855 12.1002 2.8454 20 6 8.4276 11.6084 4.5234 21 7 9.1463 12.2671 5.3945 22 14 6.8142 10.8247 5.0452 23 1 7.0738 9.4597 5.5692 24 1 6.1831 11.6503 6.1059 25 1 5.9034 10.7409 3.8754 26 6 8.1622 10.8259 0.9374 27 6 7.5458 9.9144 0.1280 28 7 7.0277 8.8028 0.6178 29 7 4.5492 3.1279 1.3093 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 5.0819 0.4512 -1.3087 36 1 3.5523 -0.4550 -1.3978 37 1 3.6793 1.1533 -2.1499 38 1 4.1635 3.1947 -1.9406 39 1 5.2353 5.3654 -0.9278 40 1 5.5662 5.0323 2.8747 41 1 6.4575 7.1459 3.3222 42 1 7.7048 9.1426 3.8636 43 1 8.8416 12.3490 6.3118 44 1 8.5844 11.7290 0.5220 45 1 7.4844 10.1046 -0.9334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365248747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:04 Heat of formation + Delta-G solvation = 64.404825 kcal Electronic energy + Delta-G solvation = -28819.483382 eV Core-core repulsion = 24647.200540 eV Total energy + Delta-G solvation = -4172.282842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47276 -40.07746 -38.65065 -38.28874 -35.60870 -34.47026 -34.04338 -33.70196 -31.32781 -30.13073 -29.55227 -28.52810 -27.88439 -26.09813 -25.99498 -23.27850 -22.71469 -22.41652 -20.80127 -20.41907 -19.88306 -18.15755 -17.78803 -17.62417 -17.01469 -16.43718 -16.34963 -15.87598 -15.66461 -15.40493 -15.19680 -14.76179 -14.38196 -14.24101 -14.03523 -13.93357 -13.51326 -13.18463 -13.14286 -12.96242 -12.89193 -12.77061 -12.64344 -12.09942 -11.81199 -11.68303 -11.55575 -11.00613 -10.91702 -10.79074 -10.73183 -10.68738 -10.22575 -10.09550 -9.94192 -9.71100 -9.40774 -8.85719 -8.26840 -8.21298 -7.94125 -7.31911 -7.06953 -4.76714 1.73359 1.88859 2.32649 2.59458 2.73992 2.83195 2.98797 3.12185 3.22176 3.44866 3.69182 3.85789 4.10328 4.19009 4.39536 4.56437 4.63497 4.71167 4.82299 4.84053 4.96239 5.01070 5.17971 5.22683 5.29864 5.36268 5.43983 5.59162 5.68151 5.69836 5.83302 6.15628 6.22118 6.35942 6.39136 6.52340 6.53296 6.76018 6.89344 6.96412 7.02051 7.11653 7.22386 7.56943 7.64612 7.90690 8.09023 8.18566 8.40002 8.62488 8.78851 9.40837 9.94482 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.001992 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.462177 B =14050.604570 C =14790.889286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.170 3.830 5 H 0.109 0.891 6 C -0.159 4.159 7 N -0.370 5.370 8 C 0.060 3.940 9 C -0.258 4.258 10 C 0.329 3.671 11 N -0.653 5.653 12 C 0.701 3.299 13 O -0.502 6.502 14 N -0.665 5.665 15 C 0.385 3.615 16 C -0.319 4.319 17 C 0.129 3.871 18 C -0.436 4.436 19 H 0.096 0.904 20 C 0.084 3.916 21 N -0.803 5.803 22 Si 0.917 3.083 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.244 1.244 26 C -0.268 4.268 27 C 0.130 3.870 28 N -0.552 5.552 29 N -0.332 5.332 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.408 0.592 41 H 0.407 0.593 42 H 0.109 0.891 43 H 0.288 0.712 44 H 0.111 0.889 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 -20.965 -7.138 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.068 3.932 5 H 0.127 0.873 6 C -0.217 4.217 7 N -0.156 5.156 8 C -0.085 4.085 9 C -0.288 4.288 10 C 0.072 3.928 11 N -0.306 5.306 12 C 0.400 3.600 13 O -0.369 6.369 14 N -0.313 5.313 15 C 0.157 3.843 16 C -0.345 4.345 17 C 0.121 3.879 18 C -0.467 4.467 19 H 0.114 0.886 20 C -0.136 4.136 21 N -0.427 5.427 22 Si 0.745 3.255 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.167 1.167 26 C -0.292 4.292 27 C -0.021 4.021 28 N -0.272 5.272 29 N -0.161 5.161 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.243 0.757 41 H 0.242 0.758 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.129 0.871 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.222 -22.262 -7.710 27.519 hybrid contribution -0.269 0.957 1.536 1.830 sum -14.491 -21.305 -6.174 26.495 Atomic orbital electron populations 1.22781 0.80218 1.03038 1.00333 1.87800 1.20293 1.26895 1.95547 1.22893 0.92970 0.85305 1.01560 1.20864 0.90976 0.79881 1.01522 0.87308 1.22150 1.02558 1.01953 0.95082 1.48051 1.49919 1.13836 1.03758 1.22515 1.00534 0.90351 0.95080 1.21994 1.12148 1.02021 0.92654 1.18823 0.95539 0.88691 0.89782 1.41821 1.64649 1.14450 1.09666 1.15787 0.79063 0.79252 0.85881 1.90956 1.56663 1.75878 1.13453 1.42524 1.61467 1.18060 1.09214 1.17690 0.91915 0.84122 0.90608 1.21191 1.16278 0.98630 0.98435 1.17692 0.87563 0.90127 0.92554 1.19518 1.15465 1.18282 0.93394 0.88595 1.26193 0.98774 0.93023 0.95627 1.69611 1.36351 1.32203 1.04519 0.86231 0.82191 0.78204 0.78918 1.19715 1.21896 1.16717 1.21700 1.10533 1.02153 0.94820 1.21625 0.93317 0.88744 0.98455 1.67278 1.26464 1.21619 1.11816 1.77328 1.25703 1.08012 1.05094 0.89220 0.93823 0.93827 0.92282 0.92507 0.91243 0.89310 0.91608 0.80892 0.80541 0.75735 0.75821 0.87368 0.90176 0.87123 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.06 10.24 -35.23 -0.36 -3.42 16 3 C 0.05 0.40 5.64 37.16 0.21 0.61 16 4 C 0.17 1.45 3.63 -67.93 -0.25 1.20 16 5 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.16 -1.00 8.73 37.16 0.32 -0.67 16 7 N -0.37 -4.25 3.52 -54.88 -0.19 -4.45 16 8 C 0.06 0.68 10.58 -17.24 -0.18 0.49 16 9 C -0.26 -3.84 9.61 -39.83 -0.38 -4.22 16 10 C 0.33 5.03 8.11 -154.37 -1.25 3.78 16 11 N -0.65 -9.57 5.45 -15.51 -0.08 -9.65 16 12 C 0.70 12.72 8.49 -86.92 -0.74 11.99 16 13 O -0.50 -10.71 11.73 5.28 0.06 -10.65 16 14 N -0.66 -12.07 5.40 -15.86 -0.09 -12.16 16 15 C 0.38 8.61 7.42 -154.69 -1.15 7.46 16 16 C -0.32 -7.41 6.95 -38.45 -0.27 -7.67 16 17 C 0.13 3.18 5.17 -106.55 -0.55 2.63 16 18 C -0.44 -11.30 9.67 -37.65 -0.36 -11.66 16 19 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.08 2.10 5.48 -17.34 -0.10 2.01 16 21 N -0.80 -20.45 13.92 55.55 0.77 -19.67 16 22 Si 0.92 19.80 24.43 -169.99 -4.15 15.65 16 23 H -0.27 -5.45 6.67 56.52 0.38 -5.08 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.24 -5.50 6.65 56.52 0.38 -5.12 16 26 C -0.27 -6.11 9.85 -39.07 -0.38 -6.49 16 27 C 0.13 2.86 11.10 -18.04 -0.20 2.66 16 28 N -0.55 -12.98 7.85 -12.76 -0.10 -13.08 16 29 N -0.33 -4.72 12.59 31.44 0.40 -4.32 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.49 7.82 -51.93 -0.41 0.08 16 37 H 0.06 0.35 7.15 -51.92 -0.37 -0.02 16 38 H 0.17 1.31 7.25 -52.48 -0.38 0.93 16 39 H 0.18 2.99 5.91 -52.48 -0.31 2.68 16 40 H 0.41 4.66 8.84 -40.82 -0.36 4.30 16 41 H 0.41 5.86 8.71 -40.82 -0.36 5.50 16 42 H 0.11 2.40 4.43 -52.49 -0.23 2.17 16 43 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 44 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -32.37 376.58 -8.06 -40.43 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.83 Total: 12.25 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -4.16 Total: 3.39 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: 0.71 Total: -63.33 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.30 Total: -14.06 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.15 Total: 15.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.37 -8.06 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365248747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.839 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds