Wall clock time and date at job start Wed Apr 1 2020 04:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36310 * 127.11727 * 2 1 4 4 O 1.35535 * 126.44952 * 0.02562 * 3 2 1 5 5 N 1.31032 * 107.10569 * 179.73381 * 3 2 1 6 6 N 1.28530 * 109.85773 * 0.26712 * 5 3 2 7 7 C 1.30335 * 109.99748 * 359.97438 * 6 5 3 8 8 C 1.50697 * 126.36108 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.46706 * 89.97728 * 8 7 6 10 10 C 1.34778 * 119.99718 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99949 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99895 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46723 * 35.00179 * 13 12 10 15 15 C 1.52998 * 109.46757 * 154.99922 * 13 12 10 16 16 C 1.50700 * 109.47398 * 295.00036 * 15 13 12 17 17 H 1.07995 * 120.00136 * 0.02562 * 16 15 13 18 18 C 1.37873 * 119.99789 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47174 * 120.00341 * 20 18 16 23 23 H 1.48504 * 109.47525 * 240.00039 * 20 18 16 24 24 C 1.50692 * 109.46980 * 275.00321 * 13 12 10 25 25 C 1.38234 * 120.00184 * 319.72586 * 24 13 12 26 26 C 1.38235 * 120.00383 * 179.79226 * 25 24 13 27 27 C 1.38242 * 119.99682 * 0.44296 * 26 25 24 28 28 C 1.38235 * 119.99747 * 359.80927 * 27 26 25 29 29 C 1.38232 * 120.00390 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47016 * 90.02592 * 1 2 3 31 31 H 1.08998 * 109.46948 * 210.01981 * 1 2 3 32 32 H 1.08997 * 109.47639 * 330.02427 * 1 2 3 33 33 H 0.96696 * 114.00033 * 269.71173 * 4 3 2 34 34 H 1.08997 * 109.47207 * 209.97499 * 8 7 6 35 35 H 1.08997 * 109.47184 * 329.98002 * 8 7 6 36 36 H 0.96998 * 119.99906 * 359.97438 * 9 8 7 37 37 H 0.96998 * 119.99675 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47041 * 55.00484 * 15 13 12 39 39 H 1.09006 * 109.46846 * 174.99672 * 15 13 12 40 40 H 0.97002 * 120.00554 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.00158 * 0.02562 * 25 24 13 42 42 H 1.08001 * 120.00573 * 180.27855 * 26 25 24 43 43 H 1.07998 * 119.99898 * 179.84098 * 27 26 25 44 44 H 1.08000 * 119.99569 * 180.02562 * 28 27 26 45 45 H 1.08001 * 120.00123 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2876 1.0869 0.0000 4 8 1.9041 2.3869 0.0005 5 7 3.5188 0.6385 0.0058 6 7 3.5153 -0.6467 0.0038 7 6 2.2894 -1.0892 -0.0029 8 6 1.8610 -2.5340 -0.0067 9 7 1.7158 -3.0038 1.3734 10 6 1.3374 -4.2744 1.6163 11 8 1.1171 -5.0308 0.6902 12 7 1.2043 -4.7068 2.8859 13 6 0.7936 -6.0881 3.1500 14 1 1.2166 -6.7446 2.3896 15 6 1.2977 -6.5150 4.5300 16 6 2.8045 -6.5404 4.5288 17 1 3.3482 -6.2779 3.6334 18 6 3.4888 -6.8977 5.6711 19 7 2.8266 -7.2169 6.7616 20 14 5.3565 -6.9299 5.6694 21 1 5.8572 -6.5328 4.3290 22 1 5.8689 -5.9806 6.6900 23 1 5.8283 -8.3014 5.9882 24 6 -0.7100 -6.1807 3.1135 25 6 -1.4781 -5.1765 3.6724 26 6 -2.8575 -5.2593 3.6351 27 6 -3.4687 -6.3509 3.0470 28 6 -2.7005 -7.3577 2.4928 29 6 -1.3212 -7.2727 2.5261 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8901 0.5134 33 1 1.7968 2.7657 -0.8827 34 1 0.9068 -2.6286 -0.5250 35 1 2.6133 -3.1347 -0.5178 36 1 1.8919 -2.4005 2.1122 37 1 1.3805 -4.1035 3.6247 38 1 0.9468 -5.8063 5.2802 39 1 0.9176 -7.5095 4.7640 40 1 3.3081 -7.4687 7.5653 41 1 -1.0006 -4.3252 4.1348 42 1 -3.4577 -4.4725 4.0678 43 1 -4.5464 -6.4169 3.0202 44 1 -3.1781 -8.2103 2.0330 45 1 -0.7211 -8.0591 2.0927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001368962707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:01 Heat of formation + Delta-G solvation = 42.703841 kcal Electronic energy + Delta-G solvation = -29609.907605 eV Core-core repulsion = 25436.683737 eV Total energy + Delta-G solvation = -4173.223867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.43502 -39.87187 -38.67209 -38.12985 -35.83087 -35.27177 -34.43496 -32.74245 -31.44435 -30.54468 -30.21698 -28.77432 -28.09484 -26.62222 -24.74968 -22.74073 -22.32073 -21.97748 -21.58021 -20.89210 -19.84437 -19.32418 -18.21280 -17.47073 -16.89609 -16.72517 -16.18662 -16.00933 -15.29138 -15.12233 -14.96337 -14.67102 -14.53607 -14.42382 -13.86920 -13.71579 -13.42687 -13.31177 -13.22788 -13.00575 -12.67746 -12.62485 -12.49465 -12.11111 -11.96241 -11.53841 -11.12926 -10.93920 -10.74728 -10.65149 -10.60218 -10.56706 -10.47461 -9.92764 -9.77521 -9.44941 -9.26995 -9.12022 -8.56010 -8.45616 -8.37115 -8.20143 -6.07938 -4.11163 1.07620 1.63796 1.75848 1.78012 2.28969 3.10599 3.29253 3.32923 3.38021 3.43694 3.58052 3.86154 4.12677 4.18357 4.42310 4.55586 4.58706 4.67454 4.89445 5.14008 5.23581 5.25058 5.29175 5.32806 5.35714 5.46078 5.51465 5.55345 5.88614 5.92170 6.02042 6.12855 6.33541 6.39911 6.41408 6.58439 6.81811 6.83441 6.85693 6.90982 7.05576 7.20738 7.38404 7.50909 7.65088 7.89344 8.26425 8.28070 8.39885 8.95396 8.97604 9.54471 11.02522 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.003440 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.908098 B = 8137.239649 C =10927.200565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.479 5.479 3 C 0.349 3.651 4 O -0.435 6.435 5 N -0.281 5.281 6 N -0.253 5.253 7 C 0.173 3.827 8 C 0.234 3.766 9 N -0.751 5.751 10 C 0.709 3.291 11 O -0.594 6.594 12 N -0.713 5.713 13 C 0.202 3.798 14 H 0.088 0.912 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.070 4.070 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.406 0.594 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.397 0.603 37 H 0.397 0.603 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 14.396 -13.093 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.182 5.182 3 C 0.044 3.956 4 O -0.234 6.234 5 N -0.133 5.133 6 N -0.096 5.096 7 C -0.093 4.093 8 C 0.107 3.893 9 N -0.410 5.410 10 C 0.408 3.592 11 O -0.472 6.472 12 N -0.365 5.365 13 C 0.097 3.903 14 H 0.106 0.894 15 C -0.014 4.014 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.071 4.071 25 C -0.126 4.126 26 C -0.145 4.145 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.264 0.736 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.231 0.769 37 H 0.232 0.768 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.612 13.729 -13.154 21.774 hybrid contribution -0.390 0.905 0.408 1.066 sum -11.002 14.634 -12.746 22.308 Atomic orbital electron populations 1.22199 0.74707 1.06014 1.04490 1.46703 1.09458 1.06898 1.55122 1.22067 0.86034 0.82351 1.05114 1.84918 1.88416 1.15749 1.34353 1.74687 1.15061 1.03625 1.19886 1.74341 1.16995 1.01909 1.16381 1.24722 0.87113 0.91391 1.06088 1.19225 1.02628 0.82721 0.84733 1.45022 1.76139 1.12604 1.07254 1.15860 0.77933 0.81061 0.84303 1.90897 1.58294 1.54707 1.43296 1.45134 1.71877 1.14434 1.05026 1.20151 0.87244 0.80945 1.01925 0.89382 1.19407 0.96345 0.97607 0.88028 1.21180 0.91005 1.46098 0.97428 0.92207 1.24982 0.98431 0.95149 0.95583 1.69965 1.35425 1.45992 1.01784 0.86550 0.85754 0.77670 0.78169 1.19602 1.21074 1.20995 1.20601 0.97138 0.94029 0.95378 1.20883 0.93334 0.98929 0.99412 1.21028 0.94761 0.98240 1.00428 1.20987 0.99144 0.95009 1.00241 1.21044 0.93964 0.98727 1.00365 1.21032 0.94457 0.98074 0.98989 0.89600 0.88304 0.88612 0.73620 0.89637 0.87618 0.76909 0.76846 0.95800 0.94645 0.92950 0.86713 0.86884 0.86918 0.86626 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.94 59.85 0.65 0.97 16 2 N -0.48 -4.17 3.20 -122.49 -0.39 -4.56 16 3 C 0.35 3.59 9.22 -88.76 -0.82 2.77 16 4 O -0.43 -3.09 13.62 -18.30 -0.25 -3.34 16 5 N -0.28 -3.91 12.22 29.65 0.36 -3.54 16 6 N -0.25 -3.61 12.18 32.97 0.40 -3.21 16 7 C 0.17 1.94 7.43 -154.11 -1.15 0.79 16 8 C 0.23 2.59 5.88 -5.19 -0.03 2.56 16 9 N -0.75 -9.60 5.55 -66.41 -0.37 -9.97 16 10 C 0.71 11.88 8.52 -86.91 -0.74 11.14 16 11 O -0.59 -11.89 16.01 5.29 0.08 -11.81 16 12 N -0.71 -12.30 4.05 -59.81 -0.24 -12.55 16 13 C 0.20 3.99 2.11 -69.09 -0.15 3.84 16 14 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 15 C 0.02 0.55 4.49 -27.88 -0.13 0.43 16 16 C -0.52 -13.65 8.84 -34.44 -0.30 -13.96 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.07 -1.25 4.91 -104.63 -0.51 -1.76 16 25 C -0.11 -1.71 9.32 -39.58 -0.37 -2.08 16 26 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 27 C -0.14 -1.84 10.05 -39.58 -0.40 -2.23 16 28 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 29 C -0.11 -1.79 9.67 -39.58 -0.38 -2.18 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.47 7.90 -51.93 -0.41 0.06 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.41 0.62 9.06 45.56 0.41 1.04 16 34 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 35 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.40 4.57 8.48 -40.82 -0.35 4.22 16 37 H 0.40 6.34 8.62 -40.82 -0.35 5.99 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.11 1.71 7.73 -52.49 -0.41 1.30 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -35.82 394.04 -9.21 -45.03 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.24 Total: 9.06 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -5.21 Total: -2.50 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.50 Total: -58.65 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.16 Total: -15.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.82 -9.21 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001368962707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.736 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds