Wall clock time and date at job start Wed Apr 1 2020 04:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36310 * 127.11727 * 2 1 4 4 O 1.35535 * 126.44952 * 0.02562 * 3 2 1 5 5 N 1.31032 * 107.10569 * 179.73381 * 3 2 1 6 6 N 1.28530 * 109.85773 * 0.26712 * 5 3 2 7 7 C 1.30335 * 109.99748 * 359.97438 * 6 5 3 8 8 C 1.50697 * 126.36108 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.46706 * 89.97728 * 8 7 6 10 10 C 1.34778 * 119.99718 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99949 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99895 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46723 * 35.00179 * 13 12 10 15 15 C 1.52998 * 109.46757 * 154.99922 * 13 12 10 16 16 C 1.50700 * 109.47398 * 295.00036 * 15 13 12 17 17 H 1.07995 * 120.00136 * 0.02562 * 16 15 13 18 18 C 1.37873 * 119.99789 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47174 * 120.00341 * 20 18 16 23 23 H 1.48504 * 109.47525 * 240.00039 * 20 18 16 24 24 C 1.50692 * 109.46980 * 275.00321 * 13 12 10 25 25 C 1.38234 * 120.00184 * 319.72586 * 24 13 12 26 26 C 1.38235 * 120.00383 * 179.79226 * 25 24 13 27 27 C 1.38242 * 119.99682 * 0.44296 * 26 25 24 28 28 C 1.38235 * 119.99747 * 359.80927 * 27 26 25 29 29 C 1.38232 * 120.00390 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47016 * 90.02592 * 1 2 3 31 31 H 1.08998 * 109.46948 * 210.01981 * 1 2 3 32 32 H 1.08997 * 109.47639 * 330.02427 * 1 2 3 33 33 H 0.96696 * 114.00033 * 269.71173 * 4 3 2 34 34 H 1.08997 * 109.47207 * 209.97499 * 8 7 6 35 35 H 1.08997 * 109.47184 * 329.98002 * 8 7 6 36 36 H 0.96998 * 119.99906 * 359.97438 * 9 8 7 37 37 H 0.96998 * 119.99675 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47041 * 55.00484 * 15 13 12 39 39 H 1.09006 * 109.46846 * 174.99672 * 15 13 12 40 40 H 0.97002 * 120.00554 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.00158 * 0.02562 * 25 24 13 42 42 H 1.08001 * 120.00573 * 180.27855 * 26 25 24 43 43 H 1.07998 * 119.99898 * 179.84098 * 27 26 25 44 44 H 1.08000 * 119.99569 * 180.02562 * 28 27 26 45 45 H 1.08001 * 120.00123 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2876 1.0869 0.0000 4 8 1.9041 2.3869 0.0005 5 7 3.5188 0.6385 0.0058 6 7 3.5153 -0.6467 0.0038 7 6 2.2894 -1.0892 -0.0029 8 6 1.8610 -2.5340 -0.0067 9 7 1.7158 -3.0038 1.3734 10 6 1.3374 -4.2744 1.6163 11 8 1.1171 -5.0308 0.6902 12 7 1.2043 -4.7068 2.8859 13 6 0.7936 -6.0881 3.1500 14 1 1.2166 -6.7446 2.3896 15 6 1.2977 -6.5150 4.5300 16 6 2.8045 -6.5404 4.5288 17 1 3.3482 -6.2779 3.6334 18 6 3.4888 -6.8977 5.6711 19 7 2.8266 -7.2169 6.7616 20 14 5.3565 -6.9299 5.6694 21 1 5.8572 -6.5328 4.3290 22 1 5.8689 -5.9806 6.6900 23 1 5.8283 -8.3014 5.9882 24 6 -0.7100 -6.1807 3.1135 25 6 -1.4781 -5.1765 3.6724 26 6 -2.8575 -5.2593 3.6351 27 6 -3.4687 -6.3509 3.0470 28 6 -2.7005 -7.3577 2.4928 29 6 -1.3212 -7.2727 2.5261 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8901 0.5134 33 1 1.7968 2.7657 -0.8827 34 1 0.9068 -2.6286 -0.5250 35 1 2.6133 -3.1347 -0.5178 36 1 1.8919 -2.4005 2.1122 37 1 1.3805 -4.1035 3.6247 38 1 0.9468 -5.8063 5.2802 39 1 0.9176 -7.5095 4.7640 40 1 3.3081 -7.4687 7.5653 41 1 -1.0006 -4.3252 4.1348 42 1 -3.4577 -4.4725 4.0678 43 1 -4.5464 -6.4169 3.0202 44 1 -3.1781 -8.2103 2.0330 45 1 -0.7211 -8.0591 2.0927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001368962707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:00 Heat of formation + Delta-G solvation = 15.078545 kcal Electronic energy + Delta-G solvation = -29611.105527 eV Core-core repulsion = 25436.683737 eV Total energy + Delta-G solvation = -4174.421790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.25342 -41.22593 -39.87925 -38.76045 -37.06101 -36.32785 -35.55168 -34.70722 -32.72374 -31.68328 -31.26509 -30.46164 -28.64373 -27.70748 -26.42038 -23.76268 -23.49216 -23.35528 -22.50891 -22.11131 -21.24169 -19.99949 -19.46305 -18.63465 -18.22699 -17.69529 -17.46111 -17.22770 -16.51272 -16.45337 -16.13512 -15.86349 -15.83809 -15.50627 -14.89689 -14.73790 -14.56394 -14.35922 -14.22443 -14.13979 -13.88797 -13.65898 -13.62849 -13.40547 -13.35026 -12.90859 -12.84044 -12.61875 -12.45590 -12.10823 -11.83227 -11.56114 -11.39674 -11.38948 -11.29084 -11.26780 -10.58392 -10.37043 -10.36563 -9.78044 -9.69447 -9.46979 -8.19558 -6.28486 0.31034 0.56256 0.61090 0.93584 1.38061 1.39635 1.41595 1.52854 1.94731 2.23546 2.40706 2.66473 2.99712 3.08162 3.14423 3.40860 3.55909 3.85653 4.04461 4.08910 4.25737 4.29122 4.33274 4.36959 4.48729 4.52441 4.62992 4.67355 4.70265 4.80133 4.81299 4.83778 5.17335 5.24807 5.29546 5.31854 5.44351 5.46504 5.65950 5.66277 5.69196 5.80405 5.86055 6.07235 6.19492 6.24678 6.38514 6.84896 7.09641 7.40580 7.43252 7.62720 8.91159 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.003440 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.908098 B = 8137.239649 C =10927.200565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.468 5.468 3 C 0.365 3.635 4 O -0.433 6.433 5 N -0.329 5.329 6 N -0.293 5.293 7 C 0.177 3.823 8 C 0.239 3.761 9 N -0.735 5.735 10 C 0.711 3.289 11 O -0.626 6.626 12 N -0.711 5.711 13 C 0.220 3.780 14 H 0.059 0.941 15 C 0.037 3.963 16 C -0.525 4.525 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.952 3.048 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.281 1.281 24 C -0.095 4.095 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.132 4.132 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.432 0.568 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.405 0.595 37 H 0.404 0.596 38 H 0.012 0.988 39 H 0.006 0.994 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 16.107 -13.709 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.170 5.170 3 C 0.059 3.941 4 O -0.236 6.236 5 N -0.180 5.180 6 N -0.137 5.137 7 C -0.091 4.091 8 C 0.112 3.888 9 N -0.393 5.393 10 C 0.411 3.589 11 O -0.508 6.508 12 N -0.364 5.364 13 C 0.114 3.886 14 H 0.077 0.923 15 C 0.000 4.000 16 C -0.564 4.564 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.778 3.222 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.207 1.207 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.150 4.150 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.294 0.706 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.240 0.760 37 H 0.239 0.761 38 H 0.031 0.969 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.851 15.503 -13.791 24.407 hybrid contribution 0.178 0.454 0.560 0.743 sum -12.673 15.957 -13.232 24.296 Atomic orbital electron populations 1.22564 0.72017 1.06918 1.06457 1.46813 1.10754 1.05597 1.53859 1.22027 0.85580 0.83503 1.03000 1.84890 1.88026 1.14040 1.36676 1.74562 1.17401 1.03682 1.22370 1.74230 1.18906 1.02557 1.17974 1.24485 0.86909 0.91673 1.06070 1.19251 1.03382 0.82617 0.83511 1.44841 1.74778 1.11224 1.08487 1.15858 0.77742 0.81849 0.83462 1.90873 1.59803 1.55982 1.44095 1.44935 1.72150 1.13584 1.05683 1.19584 0.89056 0.81648 0.98325 0.92275 1.19144 0.94922 0.95739 0.90194 1.21440 0.92500 1.45409 0.97010 0.92913 1.25714 1.02579 0.94983 0.95353 1.70063 1.37043 1.47060 1.02365 0.85594 0.80797 0.77738 0.78074 1.19592 1.20367 1.20652 1.20445 0.95713 0.95700 0.97828 1.21030 0.94517 0.98601 0.99514 1.21414 0.93984 0.99206 0.99622 1.21452 1.00979 0.93919 0.98376 1.21373 0.92871 0.99980 0.99987 1.21175 0.95989 0.97898 0.99974 0.87105 0.88146 0.86976 0.70588 0.87424 0.88851 0.75953 0.76138 0.96934 0.97579 0.92784 0.86255 0.83698 0.83269 0.84014 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.94 127.77 1.40 1.77 16 2 N -0.47 -7.24 3.20 -652.25 -2.09 -9.33 16 3 C 0.36 6.94 9.22 179.70 1.66 8.60 16 4 O -0.43 -5.08 13.62 -88.39 -1.20 -6.29 16 5 N -0.33 -9.07 12.22 -173.68 -2.12 -11.19 16 6 N -0.29 -8.43 12.18 -49.60 -0.60 -9.04 16 7 C 0.18 3.81 7.43 137.67 1.02 4.83 16 8 C 0.24 5.13 5.88 85.63 0.50 5.64 16 9 N -0.74 -18.48 5.55 -482.29 -2.68 -21.16 16 10 C 0.71 24.09 8.52 179.05 1.53 25.61 16 11 O -0.63 -25.57 16.01 -4.00 -0.06 -25.63 16 12 N -0.71 -25.17 4.05 -461.41 -1.87 -27.04 16 13 C 0.22 9.07 2.11 44.24 0.09 9.16 16 14 H 0.06 2.75 7.44 -2.39 -0.02 2.74 16 15 C 0.04 1.85 4.49 29.85 0.13 1.98 16 16 C -0.53 -28.51 8.84 25.60 0.23 -28.28 16 17 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 18 C 0.01 0.68 5.46 84.65 0.46 1.15 16 19 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 20 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 C -0.10 -3.47 4.91 -19.87 -0.10 -3.57 16 25 C -0.12 -3.68 9.32 22.27 0.21 -3.47 16 26 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 27 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 28 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 29 C -0.13 -4.49 9.67 22.27 0.22 -4.27 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.17 16 31 H 0.10 0.65 7.90 -2.39 -0.02 0.63 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.43 0.08 9.06 -74.06 -0.67 -0.59 16 34 H 0.11 1.87 7.94 -2.39 -0.02 1.85 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.41 9.07 8.48 -92.71 -0.79 8.28 16 37 H 0.40 13.11 8.62 -92.71 -0.80 12.31 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.12 3.48 7.73 -2.91 -0.02 3.46 16 42 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 45 H 0.11 3.85 8.04 -2.91 -0.02 3.82 16 Total: -1.00 -80.22 394.04 -1.49 -81.71 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -1.20 Total: 25.11 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 8.02 Total: 10.26 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -9.07 Total: -131.48 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.27 Total: -31.92 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -80.22 -1.49 -81.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001368962707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.791 kcal (2) G-P(sol) polarization free energy of solvation -80.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds