Wall clock time and date at job start Wed Apr 1 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81402 * 109.47117 * 2 1 4 4 O 1.42096 * 110.54621 * 68.37479 * 3 2 1 5 5 O 1.42101 * 110.54198 * 291.62344 * 3 2 1 6 6 N 1.65601 * 104.45166 * 180.02562 * 3 2 1 7 7 C 1.46504 * 119.99975 * 64.99918 * 6 3 2 8 8 C 1.52994 * 109.46937 * 165.00455 * 7 6 3 9 9 N 1.46504 * 109.46937 * 179.97438 * 8 7 6 10 10 C 1.36741 * 127.13495 * 274.90380 * 9 8 7 11 11 C 1.50705 * 126.34715 * 359.94551 * 10 9 8 12 12 N 1.30293 * 107.30198 * 179.97438 * 10 9 8 13 13 N 1.28524 * 110.05882 * 359.72971 * 12 10 9 14 14 C 1.31218 * 109.85757 * 0.45275 * 13 12 10 15 15 N 1.38579 * 126.47744 * 179.82464 * 14 13 12 16 16 C 1.46901 * 110.99753 * 305.67379 * 15 14 13 17 17 C 1.46901 * 111.00133 * 69.62315 * 15 14 13 18 18 H 1.09000 * 109.46998 * 55.00123 * 17 15 14 19 19 C 1.52997 * 109.47044 * 295.00793 * 17 15 14 20 20 C 1.50695 * 109.47291 * 175.00427 * 17 15 14 21 21 H 1.08000 * 120.00015 * 34.69389 * 20 17 15 22 22 C 1.37878 * 120.00140 * 214.69284 * 20 17 15 23 23 N 1.31512 * 120.00045 * 176.68712 * 22 20 17 24 24 Si 1.86798 * 119.99848 * 356.69205 * 22 20 17 25 25 H 1.48500 * 109.47409 * 84.79636 * 24 22 20 26 26 H 1.48501 * 109.47121 * 204.80071 * 24 22 20 27 27 H 1.48499 * 109.47173 * 324.79724 * 24 22 20 28 28 H 1.09003 * 109.47650 * 60.00089 * 1 2 3 29 29 H 1.08997 * 109.47649 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47193 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.47197 * 240.00313 * 2 1 3 32 32 H 1.08997 * 109.47664 * 119.99443 * 2 1 3 33 33 H 0.97004 * 119.99944 * 244.99761 * 6 3 2 34 34 H 1.09001 * 109.46984 * 44.99787 * 7 6 3 35 35 H 1.08999 * 109.46854 * 285.00028 * 7 6 3 36 36 H 1.09001 * 109.47829 * 59.99850 * 8 7 6 37 37 H 1.08999 * 109.47000 * 299.99484 * 8 7 6 38 38 H 1.08996 * 109.46868 * 89.99692 * 11 10 9 39 39 H 1.09002 * 109.46554 * 209.99744 * 11 10 9 40 40 H 1.08996 * 109.46925 * 329.99643 * 11 10 9 41 41 H 1.09010 * 109.47169 * 58.20674 * 16 15 14 42 42 H 1.08994 * 109.47285 * 178.20765 * 16 15 14 43 43 H 1.08998 * 109.47225 * 298.21427 * 16 15 14 44 44 H 1.09002 * 109.47142 * 181.78962 * 19 17 15 45 45 H 1.08998 * 109.47245 * 301.78041 * 19 17 15 46 46 H 1.08996 * 109.47636 * 61.78198 * 19 17 15 47 47 H 0.96999 * 119.99871 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.4666 0.9673 -1.1510 8 6 5.9616 1.2837 -1.0782 9 7 6.6440 0.6851 -2.2281 10 6 7.1119 -0.5952 -2.3356 11 6 7.0239 -1.6698 -1.2827 12 7 7.6485 -0.7137 -3.5170 13 7 7.5473 0.3943 -4.1604 14 6 6.9442 1.2894 -3.4142 15 7 6.6601 2.5993 -3.7663 16 6 7.8731 3.3005 -4.2077 17 6 5.6163 2.6524 -4.7986 18 1 4.7361 2.1099 -4.4535 19 6 6.1386 2.0108 -6.0855 20 6 5.2479 4.0888 -5.0670 21 1 6.0035 4.8587 -5.0159 22 6 3.9461 4.4201 -5.3778 23 7 3.6110 5.6804 -5.5480 24 14 2.6584 3.0789 -5.5571 25 1 2.1072 2.7399 -4.2205 26 1 1.5628 3.5590 -6.4371 27 1 3.2813 1.8714 -6.1563 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.2988 1.8765 0.7605 34 1 4.0528 1.3772 -2.0723 35 1 4.3228 -0.1131 -1.1372 36 1 6.3755 0.8738 -0.1568 37 1 6.1054 2.3641 -1.0919 38 1 6.0963 -2.2279 -1.4099 39 1 7.8722 -2.3469 -1.3828 40 1 7.0395 -1.2116 -0.2938 41 1 8.3114 2.7710 -5.0538 42 1 7.6166 4.3163 -4.5082 43 1 8.5916 3.3344 -3.3888 44 1 5.3756 2.0786 -6.8610 45 1 7.0371 2.5335 -6.4134 46 1 6.3753 0.9633 -5.8992 47 1 2.6951 5.9135 -5.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401512491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:24 Heat of formation + Delta-G solvation = 27.984389 kcal Electronic energy + Delta-G solvation = -30232.330984 eV Core-core repulsion = 26193.912785 eV Total energy + Delta-G solvation = -4038.418199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71266 -37.44955 -37.30287 -36.75308 -36.05301 -34.05204 -33.49082 -32.77957 -31.62960 -29.72103 -28.65603 -27.23304 -25.49950 -25.07440 -24.41587 -23.72274 -21.53199 -20.70095 -19.64916 -19.30848 -18.02291 -17.18724 -16.96583 -16.62733 -16.20888 -16.02975 -15.43635 -15.25438 -15.13662 -14.57982 -14.41375 -14.02633 -13.69863 -13.55793 -13.35288 -13.13038 -12.87757 -12.83565 -12.63064 -12.39168 -12.27592 -12.20593 -12.13121 -11.99458 -11.91826 -11.86220 -11.56847 -11.42230 -11.14810 -10.90652 -10.85479 -10.45749 -10.39174 -10.07872 -10.00787 -9.77197 -9.70628 -9.03517 -8.63178 -8.60152 -7.88384 -6.10915 -4.11548 0.01220 1.94676 2.24971 2.69734 3.13777 3.36153 3.40320 3.48026 3.57134 3.94166 4.22990 4.34988 4.36975 4.43244 4.43616 4.47638 4.53483 4.81479 4.86571 4.93551 5.13479 5.23512 5.29255 5.30340 5.30821 5.37313 5.50385 5.56749 5.62639 5.71846 5.85426 6.05715 6.21095 6.24815 6.32206 6.56924 6.63046 6.65747 6.70119 6.81963 7.02833 7.21157 7.48844 7.75409 7.96510 8.52020 8.91167 9.05893 9.50278 11.00673 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008304 B = 0.005547 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.170467 B = 5046.836884 C = 7307.126546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.634 4.634 3 S 2.605 3.395 4 O -0.956 6.956 5 O -0.933 6.933 6 N -1.114 6.114 7 C 0.099 3.901 8 C 0.110 3.890 9 N -0.472 5.472 10 C 0.155 3.845 11 C -0.059 4.059 12 N -0.291 5.291 13 N -0.314 5.314 14 C 0.373 3.627 15 N -0.462 5.462 16 C 0.043 3.957 17 C 0.195 3.805 18 H 0.037 0.963 19 C -0.177 4.177 20 C -0.507 4.507 21 H 0.084 0.916 22 C 0.084 3.916 23 N -0.890 5.890 24 Si 0.851 3.149 25 H -0.253 1.253 26 H -0.287 1.287 27 H -0.266 1.266 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.418 0.582 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -14.615 15.735 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.696 3.304 4 O -0.946 6.946 5 O -0.922 6.922 6 N -0.874 5.874 7 C -0.028 4.028 8 C -0.015 4.015 9 N -0.167 5.167 10 C -0.113 4.113 11 C -0.119 4.119 12 N -0.132 5.132 13 N -0.157 5.157 14 C 0.018 3.982 15 N -0.188 5.188 16 C -0.104 4.104 17 C 0.090 3.910 18 H 0.055 0.945 19 C -0.237 4.237 20 C -0.545 4.545 21 H 0.102 0.898 22 C -0.120 4.120 23 N -0.526 5.526 24 Si 0.677 3.323 25 H -0.177 1.177 26 H -0.213 1.213 27 H -0.191 1.191 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.253 0.747 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.573 -14.108 14.755 20.422 hybrid contribution -0.830 -0.974 0.615 1.420 sum -1.403 -15.082 15.371 21.580 Atomic orbital electron populations 1.21506 0.90327 1.05083 1.03726 1.30518 1.07550 1.26758 1.11493 1.05342 0.73110 0.77243 0.74742 1.93607 1.82905 1.72713 1.45360 1.93736 1.82606 1.71126 1.44752 1.55454 1.26271 1.78292 1.27360 1.21620 0.93381 0.97751 0.90078 1.21849 0.90630 1.02158 0.86847 1.46255 1.45122 1.11067 1.14237 1.24685 1.02175 0.85800 0.98596 1.20121 1.04252 0.94031 0.93456 1.73963 1.18821 1.17988 1.02422 1.74756 1.20165 0.96762 1.24010 1.23133 0.97598 0.93902 0.83575 1.59588 1.11216 1.03284 1.44741 1.22309 0.89155 1.00307 0.98671 1.19768 0.87781 0.98386 0.85080 0.94472 1.22679 1.01099 0.99478 1.00437 1.20766 0.95652 0.90284 1.47766 0.89837 1.24848 0.97837 0.95111 0.94181 1.69855 1.19114 1.16416 1.47258 0.87235 0.82042 0.83036 0.79995 1.17732 1.21255 1.19094 0.90693 0.89976 0.90881 0.85109 0.84972 0.74703 0.88649 0.91395 0.88583 0.86375 0.90145 0.88965 0.90808 0.94056 0.88666 0.93400 0.93097 0.92939 0.93662 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.92 37.15 0.37 -0.75 16 2 C -0.63 -4.73 6.79 37.15 0.25 -4.47 16 3 S 2.60 30.56 5.46 -107.50 -0.59 29.97 16 4 O -0.96 -13.22 18.08 -57.54 -1.04 -14.26 16 5 O -0.93 -16.46 17.49 -57.54 -1.01 -17.46 16 6 N -1.11 -10.63 5.89 -10.61 -0.06 -10.70 16 7 C 0.10 1.10 6.46 -4.04 -0.03 1.07 16 8 C 0.11 1.23 6.12 -4.04 -0.02 1.20 16 9 N -0.47 -7.03 2.81 -114.08 -0.32 -7.35 16 10 C 0.15 2.17 8.07 -154.01 -1.24 0.93 16 11 C -0.06 -0.48 10.26 36.01 0.37 -0.11 16 12 N -0.29 -5.27 12.18 32.99 0.40 -4.87 16 13 N -0.31 -6.35 9.80 30.31 0.30 -6.06 16 14 C 0.37 7.12 6.22 -318.87 -1.98 5.14 16 15 N -0.46 -9.57 4.75 -176.08 -0.84 -10.41 16 16 C 0.04 0.82 8.71 60.07 0.52 1.34 16 17 C 0.19 4.62 1.91 -68.87 -0.13 4.49 16 18 H 0.04 0.92 5.66 -51.93 -0.29 0.63 16 19 C -0.18 -4.04 8.25 37.16 0.31 -3.74 16 20 C -0.51 -13.76 8.65 -34.44 -0.30 -14.05 16 21 H 0.08 2.40 6.26 -52.49 -0.33 2.07 16 22 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 23 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 24 Si 0.85 21.61 26.41 -169.99 -4.49 17.12 16 25 H -0.25 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.27 -6.51 6.44 56.52 0.36 -6.15 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.42 2.92 8.62 -34.47 -0.30 2.62 16 34 H 0.10 1.45 7.69 -51.93 -0.40 1.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.66 7.41 -51.93 -0.38 0.28 16 37 H 0.12 1.47 8.12 -51.93 -0.42 1.05 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.41 7.38 -51.93 -0.38 0.02 16 41 H 0.04 0.80 6.40 -51.92 -0.33 0.46 16 42 H 0.09 1.91 6.02 -51.93 -0.31 1.60 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 1.18 7.16 -51.93 -0.37 0.81 16 45 H 0.05 1.15 6.42 -51.93 -0.33 0.82 16 46 H 0.04 1.01 6.02 -51.93 -0.31 0.70 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -38.60 389.02 -10.14 -48.74 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.15 Total: 2.12 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.98 Total: -6.64 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: 0.25 Total: -65.45 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -2.05 Total: -31.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.49 Total: 17.12 kcal Atomic # 16 Polarization: 30.56 SS G_CDS: -0.59 Total: 29.97 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.60 -10.14 -48.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401512491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.723 kcal (2) G-P(sol) polarization free energy of solvation -38.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds