Wall clock time and date at job start Wed Apr 1 2020 03:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81402 * 109.47117 * 2 1 4 4 O 1.42096 * 110.54621 * 68.37479 * 3 2 1 5 5 O 1.42101 * 110.54198 * 291.62344 * 3 2 1 6 6 N 1.65601 * 104.45166 * 180.02562 * 3 2 1 7 7 C 1.46504 * 119.99975 * 64.99918 * 6 3 2 8 8 C 1.52994 * 109.46937 * 165.00455 * 7 6 3 9 9 N 1.46504 * 109.46937 * 179.97438 * 8 7 6 10 10 C 1.36741 * 127.13495 * 274.90380 * 9 8 7 11 11 C 1.50705 * 126.34715 * 359.94551 * 10 9 8 12 12 N 1.30293 * 107.30198 * 179.97438 * 10 9 8 13 13 N 1.28524 * 110.05882 * 359.72971 * 12 10 9 14 14 C 1.31218 * 109.85757 * 0.45275 * 13 12 10 15 15 N 1.38579 * 126.47744 * 179.82464 * 14 13 12 16 16 C 1.46901 * 110.99753 * 305.67379 * 15 14 13 17 17 C 1.46901 * 111.00133 * 69.62315 * 15 14 13 18 18 H 1.09000 * 109.46998 * 55.00123 * 17 15 14 19 19 C 1.52997 * 109.47044 * 295.00793 * 17 15 14 20 20 C 1.50695 * 109.47291 * 175.00427 * 17 15 14 21 21 H 1.08000 * 120.00015 * 34.69389 * 20 17 15 22 22 C 1.37878 * 120.00140 * 214.69284 * 20 17 15 23 23 N 1.31512 * 120.00045 * 176.68712 * 22 20 17 24 24 Si 1.86798 * 119.99848 * 356.69205 * 22 20 17 25 25 H 1.48500 * 109.47409 * 84.79636 * 24 22 20 26 26 H 1.48501 * 109.47121 * 204.80071 * 24 22 20 27 27 H 1.48499 * 109.47173 * 324.79724 * 24 22 20 28 28 H 1.09003 * 109.47650 * 60.00089 * 1 2 3 29 29 H 1.08997 * 109.47649 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47193 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.47197 * 240.00313 * 2 1 3 32 32 H 1.08997 * 109.47664 * 119.99443 * 2 1 3 33 33 H 0.97004 * 119.99944 * 244.99761 * 6 3 2 34 34 H 1.09001 * 109.46984 * 44.99787 * 7 6 3 35 35 H 1.08999 * 109.46854 * 285.00028 * 7 6 3 36 36 H 1.09001 * 109.47829 * 59.99850 * 8 7 6 37 37 H 1.08999 * 109.47000 * 299.99484 * 8 7 6 38 38 H 1.08996 * 109.46868 * 89.99692 * 11 10 9 39 39 H 1.09002 * 109.46554 * 209.99744 * 11 10 9 40 40 H 1.08996 * 109.46925 * 329.99643 * 11 10 9 41 41 H 1.09010 * 109.47169 * 58.20674 * 16 15 14 42 42 H 1.08994 * 109.47285 * 178.20765 * 16 15 14 43 43 H 1.08998 * 109.47225 * 298.21427 * 16 15 14 44 44 H 1.09002 * 109.47142 * 181.78962 * 19 17 15 45 45 H 1.08998 * 109.47245 * 301.78041 * 19 17 15 46 46 H 1.08996 * 109.47636 * 61.78198 * 19 17 15 47 47 H 0.96999 * 119.99871 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.4666 0.9673 -1.1510 8 6 5.9616 1.2837 -1.0782 9 7 6.6440 0.6851 -2.2281 10 6 7.1119 -0.5952 -2.3356 11 6 7.0239 -1.6698 -1.2827 12 7 7.6485 -0.7137 -3.5170 13 7 7.5473 0.3943 -4.1604 14 6 6.9442 1.2894 -3.4142 15 7 6.6601 2.5993 -3.7663 16 6 7.8731 3.3005 -4.2077 17 6 5.6163 2.6524 -4.7986 18 1 4.7361 2.1099 -4.4535 19 6 6.1386 2.0108 -6.0855 20 6 5.2479 4.0888 -5.0670 21 1 6.0035 4.8587 -5.0159 22 6 3.9461 4.4201 -5.3778 23 7 3.6110 5.6804 -5.5480 24 14 2.6584 3.0789 -5.5571 25 1 2.1072 2.7399 -4.2205 26 1 1.5628 3.5590 -6.4371 27 1 3.2813 1.8714 -6.1563 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.2988 1.8765 0.7605 34 1 4.0528 1.3772 -2.0723 35 1 4.3228 -0.1131 -1.1372 36 1 6.3755 0.8738 -0.1568 37 1 6.1054 2.3641 -1.0919 38 1 6.0963 -2.2279 -1.4099 39 1 7.8722 -2.3469 -1.3828 40 1 7.0395 -1.2116 -0.2938 41 1 8.3114 2.7710 -5.0538 42 1 7.6166 4.3163 -4.5082 43 1 8.5916 3.3344 -3.3888 44 1 5.3756 2.0786 -6.8610 45 1 7.0371 2.5335 -6.4134 46 1 6.3753 0.9633 -5.8992 47 1 2.6951 5.9135 -5.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401512491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:22 Heat of formation + Delta-G solvation = -2.524445 kcal Electronic energy + Delta-G solvation = -30233.653946 eV Core-core repulsion = 26193.912785 eV Total energy + Delta-G solvation = -4039.741162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.97418 -39.13227 -38.32141 -37.69429 -37.10352 -35.09561 -34.78812 -34.09257 -32.85455 -31.43309 -29.67468 -28.39205 -27.27973 -26.86806 -25.04385 -24.67263 -23.11498 -21.79362 -21.06583 -20.39304 -19.13072 -18.91273 -18.04360 -17.69950 -17.44008 -17.19404 -16.72150 -16.50661 -16.17031 -15.91347 -15.44974 -15.29513 -15.11350 -14.81213 -14.52441 -14.16934 -13.96371 -13.79900 -13.62388 -13.49128 -13.40998 -13.35267 -13.29850 -13.23608 -13.16210 -13.10881 -12.87402 -12.73879 -12.58527 -12.45796 -12.37319 -12.09506 -11.80640 -11.64756 -11.48313 -11.20588 -11.02050 -10.79799 -10.54851 -9.94549 -9.50986 -8.33402 -6.35775 -0.83884 0.73165 1.20833 1.28120 1.35919 1.40154 1.74523 1.84023 2.30337 2.73611 2.83019 3.15979 3.22379 3.50374 3.54317 3.61936 3.66899 3.86403 4.04062 4.11875 4.16320 4.29542 4.33626 4.36651 4.39925 4.56052 4.63057 4.65814 4.72217 4.75466 4.78199 4.80775 4.84223 4.98690 5.01888 5.05993 5.07500 5.09244 5.16668 5.34533 5.50684 5.77517 5.96644 6.01856 6.15272 6.59663 6.69442 7.28555 7.77262 8.81307 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008304 B = 0.005547 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.170467 B = 5046.836884 C = 7307.126546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.600 4.600 3 S 2.595 3.405 4 O -0.987 6.987 5 O -1.008 7.008 6 N -1.103 6.103 7 C 0.100 3.900 8 C 0.104 3.896 9 N -0.466 5.466 10 C 0.186 3.814 11 C -0.063 4.063 12 N -0.335 5.335 13 N -0.341 5.341 14 C 0.345 3.655 15 N -0.465 5.465 16 C 0.049 3.951 17 C 0.203 3.797 18 H 0.027 0.973 19 C -0.166 4.166 20 C -0.499 4.499 21 H 0.059 0.941 22 C 0.033 3.967 23 N -0.934 5.934 24 Si 0.904 3.096 25 H -0.261 1.261 26 H -0.283 1.283 27 H -0.251 1.251 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.431 0.569 34 H 0.045 0.955 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -18.935 18.593 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.734 4.734 3 S 2.692 3.308 4 O -0.977 6.977 5 O -0.997 6.997 6 N -0.865 5.865 7 C -0.028 4.028 8 C -0.020 4.020 9 N -0.160 5.160 10 C -0.082 4.082 11 C -0.121 4.121 12 N -0.176 5.176 13 N -0.184 5.184 14 C -0.013 4.013 15 N -0.190 5.190 16 C -0.098 4.098 17 C 0.096 3.904 18 H 0.045 0.955 19 C -0.225 4.225 20 C -0.538 4.538 21 H 0.077 0.923 22 C -0.167 4.167 23 N -0.573 5.573 24 Si 0.729 3.271 25 H -0.186 1.186 26 H -0.209 1.209 27 H -0.175 1.175 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.193 0.807 33 H 0.268 0.732 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.171 0.829 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.272 -18.387 17.638 25.481 hybrid contribution -0.827 0.238 -0.126 0.870 sum -1.099 -18.150 17.512 25.245 Atomic orbital electron populations 1.21720 0.90384 1.06773 1.03434 1.30244 1.07314 1.21249 1.14582 1.05282 0.73459 0.79373 0.72714 1.93557 1.83393 1.75127 1.45641 1.93655 1.83784 1.74810 1.47487 1.55062 1.25467 1.78648 1.27327 1.21596 0.92868 0.99887 0.88432 1.22186 0.90802 1.01464 0.87536 1.46402 1.44666 1.11150 1.13824 1.25881 0.98177 0.85950 0.98212 1.20546 1.05990 0.92564 0.93018 1.73905 1.21608 1.17483 1.04560 1.74609 1.20634 0.97694 1.25457 1.22844 0.99835 0.93115 0.85476 1.59260 1.11047 1.05194 1.43548 1.22239 0.89141 0.98975 0.99438 1.19476 0.88739 0.95770 0.86387 0.95466 1.22526 1.00738 0.99712 0.99531 1.20978 0.94873 0.91719 1.46184 0.92329 1.25521 0.99899 0.96717 0.94530 1.69968 1.19540 1.18181 1.49648 0.86385 0.79939 0.81316 0.79502 1.18553 1.20919 1.17469 0.92160 0.87094 0.90424 0.83200 0.80710 0.73187 0.93618 0.87026 0.82930 0.88447 0.87551 0.88015 0.87077 0.94515 0.90518 0.91007 0.93999 0.92782 0.93074 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.92 71.98 0.71 -1.29 16 2 C -0.60 -6.48 6.79 71.98 0.49 -5.99 16 3 S 2.59 58.57 5.46 -56.49 -0.31 58.26 16 4 O -0.99 -26.88 18.08 -127.65 -2.31 -29.19 16 5 O -1.01 -37.07 17.49 -127.65 -2.23 -39.30 16 6 N -1.10 -18.63 5.89 -187.49 -1.10 -19.73 16 7 C 0.10 1.94 6.46 86.38 0.56 2.50 16 8 C 0.10 1.97 6.12 86.38 0.53 2.50 16 9 N -0.47 -12.63 2.81 -514.85 -1.45 -14.08 16 10 C 0.19 4.50 8.07 137.64 1.11 5.61 16 11 C -0.06 -0.61 10.26 71.24 0.73 0.12 16 12 N -0.34 -11.45 12.18 -49.53 -0.60 -12.06 16 13 N -0.34 -13.52 9.80 -58.00 -0.57 -14.09 16 14 C 0.34 12.87 6.22 260.11 1.62 14.49 16 15 N -0.47 -19.53 4.75 -711.01 -3.38 -22.91 16 16 C 0.05 1.92 8.71 127.69 1.11 3.04 16 17 C 0.20 9.82 1.91 44.17 0.08 9.90 16 18 H 0.03 1.38 5.66 -2.39 -0.01 1.37 16 19 C -0.17 -7.64 8.25 71.98 0.59 -7.04 16 20 C -0.50 -28.21 8.65 25.60 0.22 -27.99 16 21 H 0.06 3.55 6.26 -2.91 -0.02 3.53 16 22 C 0.03 1.94 5.47 84.66 0.46 2.41 16 23 N -0.93 -58.77 13.96 21.45 0.30 -58.47 16 24 Si 0.90 46.17 26.41 68.60 1.81 47.98 16 25 H -0.26 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.25 -12.02 6.44 99.48 0.64 -11.38 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.18 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.43 4.88 8.62 -96.74 -0.83 4.05 16 34 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.15 1.17 7.41 -2.39 -0.02 1.15 16 37 H 0.10 2.31 8.12 -2.39 -0.02 2.29 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.33 7.38 -2.39 -0.02 0.32 16 41 H 0.04 1.44 6.40 -2.38 -0.02 1.43 16 42 H 0.08 3.24 6.02 -2.39 -0.01 3.22 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.04 1.95 7.16 -2.39 -0.02 1.94 16 45 H 0.05 2.42 6.42 -2.39 -0.02 2.41 16 46 H 0.05 2.30 6.02 -2.39 -0.01 2.28 16 47 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -91.83 389.02 -1.52 -93.35 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.09 Total: 11.99 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 8.22 Total: -1.75 kcal Atomic # 7 Polarization: -134.54 SS G_CDS: -6.80 Total: -141.34 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -4.54 Total: -68.49 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.81 Total: 47.98 kcal Atomic # 16 Polarization: 58.57 SS G_CDS: -0.31 Total: 58.26 kcal Total: -91.83 -1.52 -93.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401512491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.826 kcal (2) G-P(sol) polarization free energy of solvation -91.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds