Wall clock time and date at job start Wed Apr 1 2020 03:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47451 * 2 1 4 4 N 1.40513 * 127.03250 * 265.02725 * 3 2 1 5 5 H 0.96999 * 126.59852 * 359.97438 * 4 3 2 6 6 C 1.35085 * 106.79751 * 179.97438 * 4 3 2 7 7 C 1.50698 * 125.29985 * 180.02562 * 6 4 3 8 8 N 1.30723 * 109.39984 * 359.97438 * 6 4 3 9 9 C 1.34311 * 110.10560 * 359.77320 * 8 6 4 10 10 N 1.32766 * 126.11968 * 180.24238 * 9 8 6 11 11 C 1.33914 * 120.00067 * 0.15260 * 10 9 8 12 12 O 1.21824 * 119.99572 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00218 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00370 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47502 * 179.97438 * 14 13 11 16 16 C 1.38297 * 119.92672 * 269.72645 * 15 14 13 17 17 C 1.38111 * 120.06682 * 179.72569 * 16 15 14 18 18 C 1.38884 * 119.92663 * 0.56612 * 17 16 15 19 19 O 1.35746 * 120.06593 * 179.68673 * 18 17 16 20 20 C 1.34831 * 116.99879 * 174.48792 * 19 18 17 21 21 H 1.07997 * 119.99767 * 5.05300 * 20 19 18 22 22 C 1.38652 * 119.99837 * 185.05679 * 20 19 18 23 23 N 1.31557 * 120.00152 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99757 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46882 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47207 * 119.99890 * 24 22 20 27 27 H 1.48504 * 109.46665 * 239.99682 * 24 22 20 28 28 C 1.38884 * 119.86139 * 359.70428 * 18 17 16 29 29 C 1.38094 * 119.93201 * 0.02562 * 28 18 17 30 30 H 1.09005 * 109.47091 * 59.99399 * 1 2 3 31 31 H 1.08995 * 109.47500 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46813 * 300.00451 * 1 2 3 33 33 H 1.08995 * 109.47547 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47019 * 240.00283 * 2 1 3 35 35 H 1.08992 * 109.47815 * 89.99442 * 7 6 4 36 36 H 1.09008 * 109.46844 * 209.99979 * 7 6 4 37 37 H 1.09007 * 109.46983 * 329.99136 * 7 6 4 38 38 H 0.97004 * 120.00133 * 359.97438 * 13 11 10 39 39 H 1.09007 * 109.46745 * 299.99846 * 14 13 11 40 40 H 1.09000 * 109.47252 * 59.99718 * 14 13 11 41 41 H 1.07994 * 119.97073 * 359.97326 * 16 15 14 42 42 H 1.07994 * 120.03588 * 180.27503 * 17 16 15 43 43 H 0.96998 * 119.99735 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.02891 * 179.97438 * 28 18 17 45 45 H 1.08004 * 119.96398 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3922 2.1466 -1.1175 5 1 2.3774 1.8619 -2.0446 6 6 2.7760 3.3553 -0.6521 7 6 3.2592 4.5023 -1.5017 8 7 2.6620 3.3754 0.6500 9 6 2.1984 2.1946 1.0912 10 7 1.9598 1.8707 2.3565 11 6 2.1802 2.7642 3.3293 12 8 2.5991 3.8744 3.0531 13 7 1.9386 2.4354 4.6137 14 6 2.1792 3.4131 5.6779 15 6 1.8323 2.8007 7.0105 16 6 0.5495 2.9224 7.5127 17 6 0.2269 2.3576 8.7310 18 6 1.1954 1.6768 9.4573 19 8 0.8830 1.1260 10.6580 20 6 1.8355 0.3830 11.2570 21 1 2.8212 0.3154 10.8210 22 6 1.5493 -0.2943 12.4325 23 7 0.3486 -0.2115 12.9637 24 14 2.8692 -1.3231 13.2626 25 1 4.1234 -1.2516 12.4709 26 1 3.1164 -0.8009 14.6306 27 1 2.4166 -2.7350 13.3460 28 6 2.4841 1.5612 8.9527 29 6 2.7989 2.1235 7.7314 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.4104 5.1196 -1.7956 36 1 3.9663 5.1045 -0.9311 37 1 3.7508 4.1123 -2.3931 38 1 1.6047 1.5516 4.8335 39 1 3.2298 3.7036 5.6736 40 1 1.5582 4.2930 5.5101 41 1 -0.2019 3.4563 6.9499 42 1 -0.7762 2.4491 9.1207 43 1 0.1484 -0.6857 13.7859 44 1 3.2395 1.0328 9.5155 45 1 3.8009 2.0335 7.3383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466922655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:34 Heat of formation + Delta-G solvation = 97.082567 kcal Electronic energy + Delta-G solvation = -28389.988439 eV Core-core repulsion = 24219.122610 eV Total energy + Delta-G solvation = -4170.865829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.48823 -39.28287 -38.75982 -36.72735 -35.77370 -34.59334 -33.56802 -32.24169 -31.91319 -31.27098 -30.12192 -29.48696 -28.58140 -25.80340 -24.76950 -23.99690 -22.14957 -21.94956 -21.89304 -20.39823 -19.69663 -18.72226 -17.94121 -17.27645 -16.84277 -16.61121 -16.26832 -15.38483 -14.97168 -14.92469 -14.56468 -14.35598 -14.30561 -14.23616 -14.03191 -13.69127 -13.56191 -13.28690 -13.19028 -12.95136 -12.64756 -12.62039 -12.52551 -11.97728 -11.83338 -11.59598 -11.27561 -11.15745 -10.87994 -10.73963 -10.62851 -10.55157 -10.43772 -10.38401 -10.37019 -9.29085 -8.87696 -8.76894 -8.48488 -8.12470 -7.94734 -7.17471 -6.42817 -4.01270 0.70559 0.75745 2.25886 2.28685 2.56732 3.06521 3.14781 3.16310 3.21968 3.70485 3.83317 3.99303 4.18876 4.33694 4.33947 4.54082 4.65405 4.75339 4.80981 4.92702 5.07343 5.12501 5.13982 5.23560 5.31293 5.40443 5.49373 5.60457 5.65321 5.71167 5.85392 6.02847 6.12443 6.26908 6.37849 6.51765 6.75848 6.82262 6.96449 7.10157 7.12866 7.29913 7.42170 7.45069 7.48802 7.86967 7.88352 8.02803 8.35198 9.03056 9.35305 9.73245 10.75218 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.001787 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.794642 B =15660.819160 C =16190.574398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.147 3.853 3 N -0.416 5.416 4 N -0.502 5.502 5 H 0.446 0.554 6 C 0.377 3.623 7 C -0.085 4.085 8 N -0.520 5.520 9 C 0.612 3.388 10 N -0.651 5.651 11 C 0.673 3.327 12 O -0.592 6.592 13 N -0.716 5.716 14 C 0.197 3.803 15 C -0.205 4.205 16 C -0.054 4.054 17 C -0.195 4.195 18 C 0.159 3.841 19 O -0.177 6.177 20 C -0.391 4.391 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.236 4.236 29 C -0.051 4.051 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.269 0.731 44 H 0.127 0.873 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 1.927 -34.442 34.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.027 3.973 3 N -0.224 5.224 4 N -0.230 5.230 5 H 0.294 0.706 6 C 0.102 3.898 7 C -0.144 4.144 8 N -0.255 5.255 9 C 0.250 3.750 10 N -0.414 5.414 11 C 0.371 3.629 12 O -0.469 6.469 13 N -0.369 5.369 14 C 0.073 3.927 15 C -0.207 4.207 16 C -0.073 4.073 17 C -0.215 4.215 18 C 0.105 3.895 19 O -0.080 6.080 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.497 5.497 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.256 4.256 29 C -0.070 4.070 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.234 0.766 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.145 0.855 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.585 2.342 -33.175 33.451 hybrid contribution 0.485 -1.299 -0.536 1.487 sum 4.070 1.043 -33.711 33.972 Atomic orbital electron populations 1.22251 0.94289 1.03382 1.03358 1.21813 0.95258 0.75433 1.04784 1.47944 1.65134 1.11633 0.97654 1.45136 1.63483 1.10663 1.03671 0.70602 1.24436 0.87969 0.85228 0.92188 1.20649 1.03452 0.92531 0.97812 1.72191 1.25927 1.21067 1.06269 1.20381 0.85314 0.81287 0.87981 1.68615 1.41268 1.37031 0.94470 1.16699 0.78892 0.84209 0.83148 1.90972 1.49131 1.23575 1.83223 1.45131 1.69979 1.17801 1.04024 1.19782 1.00245 0.90125 0.82544 1.19289 0.95054 1.08845 0.97500 1.20547 0.95121 0.97219 0.94427 1.20209 0.98894 1.06007 0.96350 1.19427 0.92490 0.91564 0.85994 1.83978 1.40839 1.57219 1.25965 1.21395 0.92477 1.26161 1.06666 0.88939 1.25300 0.97628 0.97398 0.96242 1.70052 1.19633 1.40465 1.19554 0.85641 0.79564 0.79063 0.79131 1.19070 1.20154 1.20165 1.21153 0.97366 1.08465 0.98593 1.20654 0.97767 0.94916 0.93656 0.92651 0.90103 0.90712 0.86947 0.89639 0.87941 0.87154 0.89310 0.76630 0.92151 0.92124 0.86964 0.86456 0.92081 0.85495 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.15 0.81 7.20 -4.04 -0.03 0.78 16 3 N -0.42 -3.55 3.73 -62.10 -0.23 -3.79 16 4 N -0.50 -2.41 7.36 32.72 0.24 -2.17 16 5 H 0.45 0.02 8.96 -182.28 -1.63 -1.62 16 6 C 0.38 2.73 8.17 -155.19 -1.27 1.46 16 7 C -0.09 -0.18 10.51 36.00 0.38 0.19 16 8 N -0.52 -7.18 9.19 -11.08 -0.10 -7.28 16 9 C 0.61 8.64 8.40 -321.69 -2.70 5.94 16 10 N -0.65 -10.91 10.50 -17.56 -0.18 -11.09 16 11 C 0.67 12.99 8.47 -87.69 -0.74 12.25 16 12 O -0.59 -13.03 14.88 5.08 0.08 -12.96 16 13 N -0.72 -12.66 5.55 -66.60 -0.37 -13.03 16 14 C 0.20 3.47 5.80 -5.19 -0.03 3.44 16 15 C -0.21 -3.83 5.25 -104.58 -0.55 -4.37 16 16 C -0.05 -1.03 9.69 -39.61 -0.38 -1.42 16 17 C -0.20 -4.26 9.99 -39.39 -0.39 -4.66 16 18 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 19 O -0.18 -5.13 9.76 0.06 0.00 -5.13 16 20 C -0.39 -11.08 9.49 30.89 0.29 -10.78 16 21 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 24 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 28 C -0.24 -5.30 9.17 -39.40 -0.36 -5.66 16 29 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.09 -0.11 8.14 -51.92 -0.42 -0.53 16 38 H 0.40 6.72 8.57 -40.82 -0.35 6.37 16 39 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 40 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 41 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 45 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -41.05 391.87 -12.25 -53.31 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.18 Total: 5.35 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -6.15 Total: -0.12 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.11 Total: -62.15 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.08 Total: -18.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -41.05 -12.25 -53.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466922655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.392 kcal (2) G-P(sol) polarization free energy of solvation -41.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds