Wall clock time and date at job start Wed Apr 1 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47451 * 2 1 4 4 N 1.40513 * 127.03250 * 265.02725 * 3 2 1 5 5 H 0.96999 * 126.59852 * 359.97438 * 4 3 2 6 6 C 1.35085 * 106.79751 * 179.97438 * 4 3 2 7 7 C 1.50698 * 125.29985 * 180.02562 * 6 4 3 8 8 N 1.30723 * 109.39984 * 359.97438 * 6 4 3 9 9 C 1.34311 * 110.10560 * 359.77320 * 8 6 4 10 10 N 1.32766 * 126.11968 * 180.24238 * 9 8 6 11 11 C 1.33914 * 120.00067 * 0.15260 * 10 9 8 12 12 O 1.21824 * 119.99572 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00218 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00370 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47502 * 179.97438 * 14 13 11 16 16 C 1.38297 * 119.92672 * 269.72645 * 15 14 13 17 17 C 1.38111 * 120.06682 * 179.72569 * 16 15 14 18 18 C 1.38884 * 119.92663 * 0.56612 * 17 16 15 19 19 O 1.35746 * 120.06593 * 179.68673 * 18 17 16 20 20 C 1.34831 * 116.99879 * 174.48792 * 19 18 17 21 21 H 1.07997 * 119.99767 * 5.05300 * 20 19 18 22 22 C 1.38652 * 119.99837 * 185.05679 * 20 19 18 23 23 N 1.31557 * 120.00152 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99757 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46882 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47207 * 119.99890 * 24 22 20 27 27 H 1.48504 * 109.46665 * 239.99682 * 24 22 20 28 28 C 1.38884 * 119.86139 * 359.70428 * 18 17 16 29 29 C 1.38094 * 119.93201 * 0.02562 * 28 18 17 30 30 H 1.09005 * 109.47091 * 59.99399 * 1 2 3 31 31 H 1.08995 * 109.47500 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46813 * 300.00451 * 1 2 3 33 33 H 1.08995 * 109.47547 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47019 * 240.00283 * 2 1 3 35 35 H 1.08992 * 109.47815 * 89.99442 * 7 6 4 36 36 H 1.09008 * 109.46844 * 209.99979 * 7 6 4 37 37 H 1.09007 * 109.46983 * 329.99136 * 7 6 4 38 38 H 0.97004 * 120.00133 * 359.97438 * 13 11 10 39 39 H 1.09007 * 109.46745 * 299.99846 * 14 13 11 40 40 H 1.09000 * 109.47252 * 59.99718 * 14 13 11 41 41 H 1.07994 * 119.97073 * 359.97326 * 16 15 14 42 42 H 1.07994 * 120.03588 * 180.27503 * 17 16 15 43 43 H 0.96998 * 119.99735 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.02891 * 179.97438 * 28 18 17 45 45 H 1.08004 * 119.96398 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3922 2.1466 -1.1175 5 1 2.3774 1.8619 -2.0446 6 6 2.7760 3.3553 -0.6521 7 6 3.2592 4.5023 -1.5017 8 7 2.6620 3.3754 0.6500 9 6 2.1984 2.1946 1.0912 10 7 1.9598 1.8707 2.3565 11 6 2.1802 2.7642 3.3293 12 8 2.5991 3.8744 3.0531 13 7 1.9386 2.4354 4.6137 14 6 2.1792 3.4131 5.6779 15 6 1.8323 2.8007 7.0105 16 6 0.5495 2.9224 7.5127 17 6 0.2269 2.3576 8.7310 18 6 1.1954 1.6768 9.4573 19 8 0.8830 1.1260 10.6580 20 6 1.8355 0.3830 11.2570 21 1 2.8212 0.3154 10.8210 22 6 1.5493 -0.2943 12.4325 23 7 0.3486 -0.2115 12.9637 24 14 2.8692 -1.3231 13.2626 25 1 4.1234 -1.2516 12.4709 26 1 3.1164 -0.8009 14.6306 27 1 2.4166 -2.7350 13.3460 28 6 2.4841 1.5612 8.9527 29 6 2.7989 2.1235 7.7314 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.4104 5.1196 -1.7956 36 1 3.9663 5.1045 -0.9311 37 1 3.7508 4.1123 -2.3931 38 1 1.6047 1.5516 4.8335 39 1 3.2298 3.7036 5.6736 40 1 1.5582 4.2930 5.5101 41 1 -0.2019 3.4563 6.9499 42 1 -0.7762 2.4491 9.1207 43 1 0.1484 -0.6857 13.7859 44 1 3.2395 1.0328 9.5155 45 1 3.8009 2.0335 7.3383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466922655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:33 Heat of formation + Delta-G solvation = 67.729865 kcal Electronic energy + Delta-G solvation = -28391.261267 eV Core-core repulsion = 24219.122610 eV Total energy + Delta-G solvation = -4172.138658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.24093 -40.92371 -40.26586 -38.49618 -36.37992 -35.77542 -34.87403 -34.23867 -32.52782 -32.11677 -31.82813 -31.00290 -29.08394 -27.67170 -26.35064 -24.74175 -23.63867 -23.15888 -22.56465 -22.05418 -20.81432 -19.86828 -19.49089 -18.86849 -18.11332 -17.46179 -17.16780 -16.59198 -16.50613 -16.33903 -15.92210 -15.77786 -15.53471 -15.42225 -15.18541 -14.83665 -14.75861 -14.42339 -14.38430 -14.22561 -13.69036 -13.46254 -13.37684 -13.20519 -13.03526 -13.00740 -12.56546 -12.36570 -12.31111 -12.21879 -12.08870 -12.07046 -11.76246 -11.47550 -11.19363 -11.04651 -10.81453 -10.08812 -9.89624 -9.80086 -9.00607 -8.93767 -8.47396 -6.15536 -0.05088 0.13749 0.56592 0.57982 1.36072 1.43814 1.54523 1.64790 2.17881 2.26969 2.67956 2.91943 3.10500 3.19672 3.24958 3.48337 3.77221 3.87659 3.92281 4.03701 4.05663 4.17822 4.27647 4.35229 4.47629 4.53507 4.57266 4.70633 4.71297 4.73444 4.80960 4.87738 5.03600 5.04296 5.11273 5.15507 5.22735 5.26966 5.47356 5.54597 5.68135 5.75064 5.77788 6.02379 6.15468 6.28727 6.52824 6.87413 6.97260 7.11139 7.76366 8.06430 8.75761 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.001787 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.794642 B =15660.819160 C =16190.574398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.406 5.406 4 N -0.466 5.466 5 H 0.473 0.527 6 C 0.389 3.611 7 C -0.083 4.083 8 N -0.589 5.589 9 C 0.596 3.404 10 N -0.682 5.682 11 C 0.667 3.333 12 O -0.633 6.633 13 N -0.715 5.715 14 C 0.205 3.795 15 C -0.179 4.179 16 C -0.044 4.044 17 C -0.201 4.201 18 C 0.124 3.876 19 O -0.228 6.228 20 C -0.414 4.414 21 H 0.103 0.897 22 C -0.022 4.022 23 N -0.919 5.919 24 Si 1.019 2.981 25 H -0.252 1.252 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.241 4.241 29 C -0.046 4.046 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.403 0.597 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.273 0.727 44 H 0.123 0.877 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 1.534 -39.096 39.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.021 3.979 3 N -0.211 5.211 4 N -0.195 5.195 5 H 0.326 0.674 6 C 0.115 3.885 7 C -0.141 4.141 8 N -0.326 5.326 9 C 0.233 3.767 10 N -0.450 5.450 11 C 0.365 3.635 12 O -0.513 6.513 13 N -0.369 5.369 14 C 0.081 3.919 15 C -0.180 4.180 16 C -0.063 4.063 17 C -0.221 4.221 18 C 0.073 3.927 19 O -0.134 6.134 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.839 3.161 25 H -0.175 1.175 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.260 4.260 29 C -0.065 4.065 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.152 0.848 38 H 0.237 0.763 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.161 0.839 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.141 0.859 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.093 1.916 -38.047 38.434 hybrid contribution 0.011 -1.033 0.323 1.082 sum 5.105 0.883 -37.724 38.078 Atomic orbital electron populations 1.22191 0.94063 1.04313 1.02027 1.22153 0.95366 0.73919 1.06473 1.48270 1.62980 1.12153 0.97661 1.45272 1.60758 1.09520 1.03928 0.67362 1.25308 0.85718 0.86515 0.90962 1.20956 1.04056 0.90925 0.98193 1.72097 1.28862 1.21909 1.09713 1.20600 0.85128 0.82496 0.88456 1.68572 1.44507 1.36518 0.95369 1.17011 0.78519 0.84139 0.83829 1.90920 1.51511 1.25162 1.83716 1.44969 1.70305 1.17761 1.03818 1.19655 1.00328 0.90124 0.81746 1.19493 0.94546 1.06519 0.97432 1.20845 0.96029 0.96178 0.93239 1.20424 0.98672 1.05868 0.97104 1.19935 0.94234 0.92665 0.85864 1.83948 1.41949 1.59347 1.28153 1.21885 0.93045 1.26688 1.07360 0.87984 1.26603 1.00284 0.98498 0.96624 1.70191 1.22265 1.42602 1.20620 0.84518 0.76615 0.77042 0.77952 1.17517 1.19312 1.19280 1.21223 0.96443 1.08770 0.99569 1.20903 0.99287 0.93891 0.92408 0.91549 0.88070 0.94342 0.88239 0.85023 0.86048 0.88316 0.84844 0.76277 0.92126 0.91906 0.83874 0.86353 0.91789 0.85943 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 71.98 0.74 -0.75 16 2 C 0.14 1.17 7.20 86.38 0.62 1.80 16 3 N -0.41 -6.07 3.73 -350.40 -1.31 -7.38 16 4 N -0.47 -2.76 7.36 -50.41 -0.37 -3.13 16 5 H 0.47 -2.44 8.96 -213.05 -1.91 -4.35 16 6 C 0.39 4.63 8.17 138.05 1.13 5.76 16 7 C -0.08 -0.06 10.51 71.24 0.75 0.69 16 8 N -0.59 -15.98 9.19 -188.98 -1.74 -17.72 16 9 C 0.60 16.64 8.40 261.10 2.19 18.84 16 10 N -0.68 -23.32 10.50 -328.11 -3.45 -26.76 16 11 C 0.67 26.24 8.47 179.33 1.52 27.76 16 12 O -0.63 -28.51 14.88 -4.74 -0.07 -28.58 16 13 N -0.71 -25.18 5.55 -482.78 -2.68 -27.86 16 14 C 0.21 7.03 5.80 85.63 0.50 7.52 16 15 C -0.18 -6.43 5.25 -19.84 -0.10 -6.53 16 16 C -0.04 -1.64 9.69 22.25 0.22 -1.43 16 17 C -0.20 -8.95 9.99 22.39 0.22 -8.73 16 18 C 0.12 6.36 6.65 22.58 0.15 6.51 16 19 O -0.23 -13.97 9.76 -22.71 -0.22 -14.19 16 20 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 21 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 22 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 23 N -0.92 -57.03 13.67 21.61 0.30 -56.74 16 24 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 C -0.24 -10.95 9.17 22.39 0.21 -10.75 16 29 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.13 -1.07 8.14 -2.38 -0.02 -1.08 16 38 H 0.40 13.48 8.57 -92.71 -0.79 12.68 16 39 H 0.06 2.10 8.09 -2.38 -0.02 2.09 16 40 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 41 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.12 5.61 5.64 -2.91 -0.02 5.60 16 45 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -98.40 391.87 0.30 -98.10 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.65 Total: 24.16 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 9.46 Total: 14.47 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -9.24 Total: -139.59 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.29 Total: -42.76 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -98.40 0.30 -98.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466922655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.827 kcal (2) G-P(sol) polarization free energy of solvation -98.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds